Wall clock time and date at job start Mon Mar 30 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00444 * 2 1 4 4 C 1.52996 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46776 * 65.00504 * 4 3 2 6 6 C 1.46500 * 119.99930 * 275.56952 * 5 4 3 7 7 C 1.50697 * 109.47334 * 270.00080 * 6 5 4 8 8 H 1.08002 * 119.99651 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00263 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00040 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00169 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46747 * 59.99857 * 11 9 7 13 13 H 1.48504 * 109.46931 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46922 * 299.99871 * 11 9 7 15 15 C 1.34772 * 120.00121 * 95.56939 * 5 4 3 16 16 O 1.21286 * 119.99777 * 184.69498 * 15 5 4 17 17 C 1.50702 * 120.00225 * 4.69382 * 15 5 4 18 18 H 1.08995 * 109.46635 * 310.64167 * 17 15 5 19 19 O 1.42895 * 109.47082 * 190.64115 * 17 15 5 20 20 N 1.46305 * 114.00069 * 85.00309 * 19 17 15 21 21 C 1.52999 * 109.46752 * 70.64202 * 17 15 5 22 22 C 1.53001 * 117.49546 * 243.60388 * 21 17 15 23 23 C 1.52997 * 117.49448 * 174.94867 * 21 17 15 24 24 H 1.09007 * 109.46577 * 299.99578 * 1 2 3 25 25 H 1.08996 * 109.47268 * 59.98898 * 1 2 3 26 26 H 1.08992 * 109.47589 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46771 * 60.00412 * 3 2 1 28 28 H 1.08999 * 109.47430 * 300.00705 * 3 2 1 29 29 H 1.09002 * 109.47240 * 305.00796 * 4 3 2 30 30 H 1.08996 * 109.47572 * 185.00165 * 4 3 2 31 31 H 1.09009 * 109.47243 * 29.99963 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99819 * 6 5 4 33 33 H 0.97004 * 119.99880 * 180.02562 * 10 9 7 34 34 H 1.00901 * 110.99979 * 56.03713 * 20 19 17 35 35 H 1.00896 * 111.00121 * 179.97438 * 20 19 17 36 36 H 1.08994 * 115.55497 * 29.27649 * 21 17 15 37 37 H 1.09003 * 117.50073 * 0.02562 * 22 21 17 38 38 H 1.09000 * 117.49965 * 145.01986 * 22 21 17 39 39 H 1.09003 * 117.49545 * 214.97765 * 23 21 17 40 40 H 1.08996 * 117.50222 * 359.96910 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 3.9895 -0.8953 -1.3803 7 6 5.3286 -1.4270 -0.9386 8 1 6.0938 -0.7460 -0.5963 9 6 5.5774 -2.7827 -0.9726 10 7 4.6458 -3.6120 -1.3899 11 14 7.2377 -3.4417 -0.4258 12 1 7.4758 -3.0686 0.9917 13 1 7.2510 -4.9208 -0.5580 14 1 8.3061 -2.8595 -1.2772 15 6 4.3707 1.3354 -2.2834 16 8 4.6545 0.8263 -3.3471 17 6 4.4586 2.8305 -2.1164 18 1 3.5348 3.2013 -1.6722 19 8 4.6521 3.4419 -3.3933 20 7 3.4121 3.6865 -4.1301 21 6 5.6372 3.1731 -1.2029 22 6 5.3226 3.8532 0.1310 23 6 5.9687 4.6532 -1.0027 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.6888 1.8462 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8508 0.5682 0.8426 30 1 3.9786 2.1763 0.0902 31 1 3.2050 -1.3224 -0.7554 32 1 3.8149 -1.1695 -2.4206 33 1 4.8208 -4.5658 -1.4135 34 1 2.7724 4.2457 -3.5859 35 1 3.6007 4.1184 -5.0223 36 1 6.4693 2.4695 -1.2252 37 1 4.2760 4.0562 0.3581 38 1 5.9480 3.5972 0.9863 39 1 7.0191 4.9233 -0.8930 40 1 5.3476 5.3829 -1.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708771914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:32 Heat of formation + Delta-G solvation = -69.662630 kcal Electronic energy + Delta-G solvation = -22462.409361 eV Core-core repulsion = 19086.802921 eV Total energy + Delta-G solvation = -3375.606441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14207 -38.85665 -38.44207 -37.04164 -36.22439 -34.73313 -31.42555 -31.02818 -29.56052 -27.77461 -27.07756 -24.68622 -23.98602 -23.26787 -22.00250 -20.25641 -18.62465 -18.49518 -18.04835 -17.37122 -17.23525 -16.89843 -16.64794 -16.21328 -16.08193 -15.50780 -15.47306 -14.90707 -14.57291 -14.29783 -14.05257 -13.61365 -13.37842 -13.05981 -12.89089 -12.81440 -12.61998 -12.54679 -12.33020 -12.20918 -12.15500 -11.95100 -11.68121 -11.39031 -11.17343 -10.61392 -10.54077 -10.48773 -9.82958 -9.34778 -8.16868 -6.31968 1.35201 1.40945 1.47738 1.62049 1.84288 2.32877 2.47388 2.87229 2.98207 3.12301 3.54934 3.71900 3.80849 3.94677 3.97706 4.18283 4.32643 4.40875 4.45970 4.51140 4.55416 4.60561 4.63079 4.78647 4.88068 4.97340 5.01408 5.13557 5.25922 5.26896 5.33157 5.61596 5.84446 5.93977 6.13800 6.21496 6.37433 6.77106 6.87369 7.32563 7.54994 8.90178 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.007130 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.856143 B = 3925.960519 C = 4797.947694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.043 3.957 4 C 0.094 3.906 5 N -0.590 5.590 6 C 0.270 3.730 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.004 3.996 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.478 3.522 16 O -0.587 6.587 17 C 0.126 3.874 18 H 0.113 0.887 19 O -0.230 6.230 20 N -0.677 5.677 21 C -0.189 4.189 22 C -0.149 4.149 23 C -0.142 4.142 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.034 0.966 32 H -0.019 1.019 33 H 0.265 0.735 34 H 0.353 0.647 35 H 0.378 0.622 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 20.507 7.012 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.034 4.034 4 C -0.028 4.028 5 N -0.322 5.322 6 C 0.148 3.852 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.791 3.209 12 H -0.181 1.181 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.266 3.734 16 O -0.467 6.467 17 C 0.063 3.937 18 H 0.130 0.870 19 O -0.241 6.241 20 N -0.250 5.250 21 C -0.210 4.210 22 C -0.185 4.185 23 C -0.179 4.179 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.052 0.948 32 H -0.001 1.001 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.193 0.807 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.543 19.154 6.344 20.925 hybrid contribution 0.568 -0.032 -0.307 0.647 sum -4.974 19.122 6.037 20.660 Atomic orbital electron populations 1.22854 0.80125 1.03003 1.00843 1.88073 1.21119 1.28908 1.95498 1.23220 0.93478 0.85000 1.01733 1.22159 0.93340 1.00747 0.86586 1.48093 1.62993 1.07389 1.13709 1.18652 0.96032 0.75824 0.94651 1.21741 1.00048 0.92563 1.43779 0.92858 1.25900 1.01141 0.97078 0.95281 1.70089 1.35502 1.03467 1.47880 0.85481 0.78876 0.77177 0.79325 1.18133 1.20294 1.20452 1.21924 0.76858 0.91182 0.83421 1.90623 1.50935 1.76201 1.28960 1.21433 0.99936 0.87456 0.84857 0.86950 1.90735 1.21361 1.80008 1.32042 1.64297 0.99687 1.56721 1.04279 1.22031 0.99192 0.99310 1.00430 1.23383 1.03946 1.00447 0.90753 1.22996 1.02942 0.90872 1.01119 0.91603 0.93911 0.90333 0.88412 0.93325 0.90583 0.85394 0.94821 1.00093 0.92577 0.83429 0.80651 0.89700 0.85511 0.86459 0.87493 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -14.81 9.03 -148.98 -1.35 -16.15 16 3 C 0.04 1.16 6.28 71.98 0.45 1.61 16 4 C 0.09 3.03 5.54 86.38 0.48 3.51 16 5 N -0.59 -27.00 2.45 -826.15 -2.02 -29.02 16 6 C 0.27 15.87 5.02 85.63 0.43 16.30 16 7 C -0.54 -33.29 9.39 25.60 0.24 -33.05 16 8 H 0.05 3.19 7.81 -2.91 -0.02 3.16 16 9 C 0.00 0.27 5.46 84.65 0.46 0.74 16 10 N -0.93 -59.66 13.29 21.45 0.28 -59.37 16 11 Si 0.97 47.04 29.54 68.60 2.03 49.07 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 15 C 0.48 22.10 6.96 87.66 0.61 22.71 16 16 O -0.59 -34.55 16.09 15.77 0.25 -34.30 16 17 C 0.13 3.96 2.21 29.85 0.07 4.03 16 18 H 0.11 2.66 7.02 -2.39 -0.02 2.64 16 19 O -0.23 -7.61 10.98 -31.35 -0.34 -7.95 16 20 N -0.68 -17.39 10.78 37.02 0.40 -16.99 16 21 C -0.19 -5.02 4.76 -10.79 -0.05 -5.07 16 22 C -0.15 -2.34 8.34 30.62 0.26 -2.09 16 23 C -0.14 -2.47 10.07 30.62 0.31 -2.17 16 24 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.13 3.01 2.84 -2.39 -0.01 3.01 16 31 H 0.03 2.06 6.62 -2.38 -0.02 2.04 16 32 H -0.02 -1.32 7.36 -2.39 -0.02 -1.34 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.35 6.08 9.06 -89.69 -0.81 5.26 16 35 H 0.38 7.78 9.25 -89.70 -0.83 6.95 16 36 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 37 H 0.13 1.30 7.42 -2.39 -0.02 1.29 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -89.75 335.50 3.17 -86.59 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.58 Total: 19.65 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 4.50 Total: 8.48 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -1.34 Total: -105.38 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -1.44 Total: -58.40 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -89.75 3.17 -86.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708771914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.923 kcal (2) G-P(sol) polarization free energy of solvation -89.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds