Wall clock time and date at job start Mon Mar 30 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00062 * 2 1 4 4 H 1.09003 * 110.87145 * 327.60831 * 3 2 1 5 5 C 1.54899 * 110.99062 * 91.45539 * 3 2 1 6 6 N 1.47839 * 104.79730 * 155.16385 * 5 3 2 7 7 C 1.46909 * 110.99979 * 213.63496 * 6 5 3 8 8 C 1.52991 * 109.46942 * 304.01037 * 7 6 5 9 9 O 1.42901 * 109.47656 * 64.99831 * 8 7 6 10 10 C 1.42891 * 114.00653 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47381 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99936 * 359.97438 * 11 10 9 13 13 C 1.37886 * 120.00289 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99626 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00148 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47146 * 59.99872 * 15 13 11 17 17 H 1.48501 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46993 * 300.00043 * 15 13 11 19 19 C 1.47447 * 108.56859 * 335.89834 * 6 5 3 20 20 C 1.52998 * 109.88798 * 120.39419 * 19 6 5 21 21 C 1.52996 * 109.89294 * 241.42736 * 19 6 5 22 22 N 1.46899 * 109.47173 * 180.41229 * 21 19 6 23 23 C 1.54318 * 107.22959 * 0.99478 * 19 6 5 24 24 H 1.08993 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46914 * 300.00351 * 1 2 3 26 26 H 1.08998 * 109.46917 * 59.99915 * 1 2 3 27 27 H 1.08998 * 110.37712 * 36.32832 * 5 3 2 28 28 H 1.09007 * 110.37016 * 273.99016 * 5 3 2 29 29 H 1.09002 * 109.46806 * 64.01249 * 7 6 5 30 30 H 1.09000 * 109.46695 * 184.00952 * 7 6 5 31 31 H 1.09000 * 109.47304 * 184.99861 * 8 7 6 32 32 H 1.09002 * 109.47530 * 305.00057 * 8 7 6 33 33 H 1.09007 * 109.46988 * 300.00421 * 10 9 8 34 34 H 1.09001 * 109.47220 * 59.99643 * 10 9 8 35 35 H 0.97003 * 120.00043 * 179.97438 * 14 13 11 36 36 H 1.09006 * 109.46831 * 60.00464 * 20 19 6 37 37 H 1.08998 * 109.47307 * 300.00593 * 20 19 6 38 38 H 1.08998 * 109.47417 * 180.02562 * 20 19 6 39 39 H 1.09000 * 109.46661 * 300.40618 * 21 19 6 40 40 H 1.08995 * 109.47322 * 60.40401 * 21 19 6 41 41 H 1.00901 * 110.99704 * 184.09639 * 22 21 19 42 42 H 1.00902 * 110.99545 * 308.04384 * 22 21 19 43 43 H 1.08998 * 110.70723 * 140.66303 * 23 19 6 44 44 H 1.08997 * 110.70489 * 263.89796 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3825 2.0101 -0.5456 5 6 2.2695 1.7975 1.4457 6 7 3.3628 2.7844 1.3184 7 6 4.2378 2.7560 2.4981 8 6 3.4024 2.9894 3.7584 9 8 2.4932 1.9013 3.9357 10 6 1.6615 2.0212 5.0914 11 6 0.7483 0.8256 5.1793 12 1 0.7979 0.0519 4.4275 13 6 -0.1513 0.7201 6.2189 14 7 -0.2119 1.6626 7.1341 15 14 -1.2837 -0.7615 6.3274 16 1 -0.4704 -1.9998 6.4297 17 1 -2.1488 -0.6363 7.5279 18 1 -2.1325 -0.8259 5.1106 19 6 4.1224 2.4878 0.0899 20 6 4.0816 3.6935 -0.8511 21 6 5.5727 2.1521 0.4430 22 7 6.3230 1.8680 -0.7876 23 6 3.4477 1.2738 -0.5827 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.5800 0.9667 2.0794 28 1 1.3756 2.2716 1.8512 29 1 4.7293 1.7852 2.5625 30 1 4.9907 3.5393 2.4109 31 1 4.0615 3.0569 4.6239 32 1 2.8415 3.9184 3.6556 33 1 2.2848 2.0683 5.9844 34 1 1.0645 2.9301 5.0167 35 1 -0.8450 1.5886 7.8653 36 1 4.5240 4.5571 -0.3545 37 1 3.0470 3.9153 -1.1128 38 1 4.6444 3.4668 -1.7566 39 1 6.0266 2.9989 0.9578 40 1 5.5954 1.2773 1.0926 41 1 7.2664 1.5785 -0.5771 42 1 5.8490 1.1759 -1.3483 43 1 3.4273 1.3953 -1.6657 44 1 3.9550 0.3493 -0.3071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708951268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:35 Heat of formation + Delta-G solvation = -81.308362 kcal Electronic energy + Delta-G solvation = -22737.970974 eV Core-core repulsion = 19497.692631 eV Total energy + Delta-G solvation = -3240.278343 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15421 -37.31631 -36.66365 -34.15509 -32.82978 -31.90654 -30.06717 -28.15946 -26.89517 -26.11906 -25.93136 -24.05308 -22.43480 -21.77744 -20.74280 -18.54358 -16.93507 -16.57001 -16.33816 -15.80695 -15.40633 -14.97884 -14.68377 -14.58089 -14.36437 -14.30210 -13.77039 -13.41258 -13.14210 -12.96263 -12.81280 -12.48767 -12.07847 -11.68817 -11.62998 -11.56742 -11.22527 -11.16870 -11.09884 -10.83382 -10.74645 -10.55656 -10.44453 -10.32733 -9.91103 -9.36036 -9.07593 -8.85830 -8.77704 -8.15284 -7.99760 -6.11203 -4.12825 3.30460 3.33679 3.37227 3.70143 4.24534 4.33645 4.52003 4.55474 4.84496 4.86635 5.01919 5.11207 5.25257 5.27381 5.37643 5.46803 5.54026 5.59469 5.63847 5.72546 5.76031 5.85115 5.92323 5.96903 6.01318 6.09163 6.11193 6.18648 6.30717 6.39432 6.49595 6.70944 6.90746 7.12354 7.17883 7.25435 7.35710 7.43876 7.47580 7.78450 8.15531 8.57300 9.00379 9.51970 11.00265 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.005242 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.983994 B = 5340.084863 C = 6263.612848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.073 3.927 4 H 0.070 0.930 5 C 0.038 3.962 6 N -0.513 5.513 7 C 0.051 3.949 8 C 0.060 3.940 9 O -0.392 6.392 10 C 0.195 3.805 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.099 3.901 20 C -0.116 4.116 21 C 0.051 3.949 22 N -0.846 5.846 23 C -0.128 4.128 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.002 0.998 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.339 0.661 42 H 0.339 0.661 43 H 0.077 0.923 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 1.262 -15.703 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.015 3.985 4 H 0.088 0.912 5 C -0.090 4.090 6 N -0.239 5.239 7 C -0.077 4.077 8 C -0.017 4.017 9 O -0.312 6.312 10 C 0.121 3.879 11 C -0.551 4.551 12 H 0.083 0.917 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.733 3.267 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.009 3.991 20 C -0.174 4.174 21 C -0.081 4.081 22 N -0.376 5.376 23 C -0.166 4.166 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.253 2.259 -15.838 18.002 hybrid contribution -0.443 -2.006 1.022 2.295 sum 7.811 0.252 -14.816 16.750 Atomic orbital electron populations 1.22778 0.80841 1.02629 1.00262 1.87853 1.19932 1.27084 1.94963 1.23342 0.93817 0.84574 0.96815 0.91163 1.23555 0.95299 0.95146 0.94990 1.63746 1.10251 1.48853 1.01025 1.22414 0.94972 1.00482 0.89806 1.22276 0.92623 0.91853 0.94996 1.87929 1.51839 1.42799 1.48603 1.20161 0.88417 0.97201 0.82132 1.20994 1.18274 1.05919 1.09879 0.91732 1.24933 0.97328 0.96853 0.95285 1.69954 1.37014 1.33422 1.13360 0.86439 0.80308 0.82512 0.77471 1.20067 1.21173 1.20044 1.21728 0.91224 0.94637 0.91509 1.21631 1.01137 0.96490 0.98117 1.22407 0.94062 1.00254 0.91336 1.58767 1.06174 1.52445 1.20176 1.22863 0.95144 0.98181 1.00423 0.89875 0.93032 0.94503 0.90118 0.89478 0.93853 0.90095 0.94150 0.93607 0.98001 0.97786 0.92640 0.92685 0.93046 0.91725 0.90212 0.95005 0.84861 0.84832 0.90443 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.89 101.05 1.10 1.53 16 2 O -0.38 -6.11 10.51 -35.23 -0.37 -6.48 16 3 C 0.07 1.09 3.48 -24.59 -0.09 1.00 16 4 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 5 C 0.04 0.66 4.64 -2.31 -0.01 0.65 16 6 N -0.51 -7.85 4.89 -215.76 -1.06 -8.91 16 7 C 0.05 0.78 4.35 -3.82 -0.02 0.77 16 8 C 0.06 1.12 6.09 37.15 0.23 1.35 16 9 O -0.39 -9.11 6.76 -35.23 -0.24 -9.35 16 10 C 0.20 5.29 5.69 36.00 0.20 5.50 16 11 C -0.51 -14.88 9.43 -34.44 -0.32 -15.20 16 12 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 15 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.10 1.24 0.96 -130.61 -0.13 1.11 16 20 C -0.12 -1.34 8.54 37.16 0.32 -1.02 16 21 C 0.05 0.57 4.39 -3.83 -0.02 0.55 16 22 N -0.85 -7.76 8.84 -10.37 -0.09 -7.85 16 23 C -0.13 -1.61 4.68 -24.91 -0.12 -1.72 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 27 H 0.08 1.67 6.39 -51.93 -0.33 1.33 16 28 H 0.09 1.73 7.79 -51.93 -0.40 1.33 16 29 H 0.04 0.68 6.32 -51.93 -0.33 0.35 16 30 H 0.08 1.05 6.89 -51.93 -0.36 0.69 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.00 0.06 8.14 -51.92 -0.42 -0.36 16 34 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 39 H 0.08 0.90 6.64 -51.93 -0.35 0.55 16 40 H 0.03 0.39 6.68 -51.93 -0.35 0.05 16 41 H 0.34 2.57 9.08 -39.29 -0.36 2.22 16 42 H 0.34 2.92 7.86 -39.29 -0.31 2.61 16 43 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 44 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -30.75 341.86 -7.57 -38.33 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.74 Total: 2.39 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 1.05 Total: -3.95 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.41 Total: -42.86 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.61 Total: -15.83 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.75 -7.57 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708951268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.982 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds