Wall clock time and date at job start Mon Mar 30 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00062 * 2 1 4 4 H 1.09003 * 110.87145 * 327.60831 * 3 2 1 5 5 C 1.54899 * 110.99062 * 91.45539 * 3 2 1 6 6 N 1.47839 * 104.79730 * 155.16385 * 5 3 2 7 7 C 1.46909 * 110.99979 * 213.63496 * 6 5 3 8 8 C 1.52991 * 109.46942 * 304.01037 * 7 6 5 9 9 O 1.42901 * 109.47656 * 64.99831 * 8 7 6 10 10 C 1.42891 * 114.00653 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47381 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99936 * 359.97438 * 11 10 9 13 13 C 1.37886 * 120.00289 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99626 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00148 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47146 * 59.99872 * 15 13 11 17 17 H 1.48501 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46993 * 300.00043 * 15 13 11 19 19 C 1.47447 * 108.56859 * 335.89834 * 6 5 3 20 20 C 1.52998 * 109.88798 * 120.39419 * 19 6 5 21 21 C 1.52996 * 109.89294 * 241.42736 * 19 6 5 22 22 N 1.46899 * 109.47173 * 180.41229 * 21 19 6 23 23 C 1.54318 * 107.22959 * 0.99478 * 19 6 5 24 24 H 1.08993 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46914 * 300.00351 * 1 2 3 26 26 H 1.08998 * 109.46917 * 59.99915 * 1 2 3 27 27 H 1.08998 * 110.37712 * 36.32832 * 5 3 2 28 28 H 1.09007 * 110.37016 * 273.99016 * 5 3 2 29 29 H 1.09002 * 109.46806 * 64.01249 * 7 6 5 30 30 H 1.09000 * 109.46695 * 184.00952 * 7 6 5 31 31 H 1.09000 * 109.47304 * 184.99861 * 8 7 6 32 32 H 1.09002 * 109.47530 * 305.00057 * 8 7 6 33 33 H 1.09007 * 109.46988 * 300.00421 * 10 9 8 34 34 H 1.09001 * 109.47220 * 59.99643 * 10 9 8 35 35 H 0.97003 * 120.00043 * 179.97438 * 14 13 11 36 36 H 1.09006 * 109.46831 * 60.00464 * 20 19 6 37 37 H 1.08998 * 109.47307 * 300.00593 * 20 19 6 38 38 H 1.08998 * 109.47417 * 180.02562 * 20 19 6 39 39 H 1.09000 * 109.46661 * 300.40618 * 21 19 6 40 40 H 1.08995 * 109.47322 * 60.40401 * 21 19 6 41 41 H 1.00901 * 110.99704 * 184.09639 * 22 21 19 42 42 H 1.00902 * 110.99545 * 308.04384 * 22 21 19 43 43 H 1.08998 * 110.70723 * 140.66303 * 23 19 6 44 44 H 1.08997 * 110.70489 * 263.89796 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3825 2.0101 -0.5456 5 6 2.2695 1.7975 1.4457 6 7 3.3628 2.7844 1.3184 7 6 4.2378 2.7560 2.4981 8 6 3.4024 2.9894 3.7584 9 8 2.4932 1.9013 3.9357 10 6 1.6615 2.0212 5.0914 11 6 0.7483 0.8256 5.1793 12 1 0.7979 0.0519 4.4275 13 6 -0.1513 0.7201 6.2189 14 7 -0.2119 1.6626 7.1341 15 14 -1.2837 -0.7615 6.3274 16 1 -0.4704 -1.9998 6.4297 17 1 -2.1488 -0.6363 7.5279 18 1 -2.1325 -0.8259 5.1106 19 6 4.1224 2.4878 0.0899 20 6 4.0816 3.6935 -0.8511 21 6 5.5727 2.1521 0.4430 22 7 6.3230 1.8680 -0.7876 23 6 3.4477 1.2738 -0.5827 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.5800 0.9667 2.0794 28 1 1.3756 2.2716 1.8512 29 1 4.7293 1.7852 2.5625 30 1 4.9907 3.5393 2.4109 31 1 4.0615 3.0569 4.6239 32 1 2.8415 3.9184 3.6556 33 1 2.2848 2.0683 5.9844 34 1 1.0645 2.9301 5.0167 35 1 -0.8450 1.5886 7.8653 36 1 4.5240 4.5571 -0.3545 37 1 3.0470 3.9153 -1.1128 38 1 4.6444 3.4668 -1.7566 39 1 6.0266 2.9989 0.9578 40 1 5.5954 1.2773 1.0926 41 1 7.2664 1.5785 -0.5771 42 1 5.8490 1.1759 -1.3483 43 1 3.4273 1.3953 -1.6657 44 1 3.9550 0.3493 -0.3071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708951268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:34 Heat of formation + Delta-G solvation = -105.571245 kcal Electronic energy + Delta-G solvation = -22739.023091 eV Core-core repulsion = 19497.692631 eV Total energy + Delta-G solvation = -3241.330460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32395 -38.72060 -38.21530 -35.33806 -34.80884 -33.26063 -31.09678 -29.88720 -28.57395 -27.25228 -27.11073 -25.11009 -24.53541 -23.20009 -22.02568 -19.63686 -18.60006 -18.06901 -17.70867 -17.47889 -16.72453 -16.35985 -16.12586 -15.91771 -15.77175 -15.53368 -14.97134 -14.93293 -14.52970 -14.22366 -14.01832 -13.77170 -13.64206 -13.22975 -12.96476 -12.83831 -12.72232 -12.61866 -12.51647 -12.30315 -12.25202 -12.13124 -11.72775 -11.64566 -11.39315 -11.25140 -10.90070 -10.56092 -10.16722 -9.66425 -9.22098 -8.33304 -6.45239 1.36852 1.41159 1.49725 2.32186 2.53538 3.00514 3.14195 3.17515 3.47226 3.57593 3.78113 4.01882 4.02291 4.18753 4.21219 4.29710 4.35204 4.47644 4.52169 4.54749 4.63688 4.67070 4.74431 4.81627 4.82357 4.84255 4.87441 4.97670 5.07764 5.10959 5.14111 5.17595 5.28106 5.52513 5.53655 5.93784 5.95469 6.06888 6.25036 6.26495 6.51968 6.59428 6.80592 7.26441 8.78864 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.005242 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.983994 B = 5340.084863 C = 6263.612848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.075 3.925 4 H 0.083 0.917 5 C 0.046 3.954 6 N -0.518 5.518 7 C 0.061 3.939 8 C 0.051 3.949 9 O -0.397 6.397 10 C 0.211 3.789 11 C -0.541 4.541 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.930 5.930 15 Si 0.978 3.022 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.265 1.265 19 C 0.098 3.902 20 C -0.109 4.109 21 C 0.058 3.942 22 N -0.840 5.840 23 C -0.118 4.118 24 H 0.097 0.903 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.114 0.886 31 H 0.049 0.951 32 H 0.041 0.959 33 H -0.018 1.018 34 H -0.019 1.019 35 H 0.270 0.730 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.019 0.981 41 H 0.351 0.649 42 H 0.344 0.656 43 H 0.102 0.898 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.164 0.693 -17.569 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.016 3.984 4 H 0.100 0.900 5 C -0.082 4.082 6 N -0.244 5.244 7 C -0.067 4.067 8 C -0.026 4.026 9 O -0.317 6.317 10 C 0.136 3.864 11 C -0.579 4.579 12 H 0.076 0.924 13 C -0.190 4.190 14 N -0.570 5.570 15 Si 0.801 3.199 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.189 1.189 19 C 0.009 3.991 20 C -0.167 4.167 21 C -0.074 4.074 22 N -0.372 5.372 23 C -0.156 4.156 24 H 0.116 0.884 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.059 0.941 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.037 0.963 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.847 1.698 -17.724 19.883 hybrid contribution -0.566 -1.757 1.583 2.432 sum 8.281 -0.059 -16.142 18.142 Atomic orbital electron populations 1.22910 0.79856 1.03708 1.00393 1.87829 1.21188 1.27757 1.94920 1.23386 0.95525 0.84456 0.95011 0.89951 1.23255 0.94742 0.93946 0.96290 1.63716 1.10435 1.48094 1.02163 1.22406 0.94606 1.01529 0.88152 1.22588 0.92234 0.90386 0.97405 1.87948 1.52231 1.44708 1.46780 1.19751 0.88181 0.95782 0.82690 1.21271 1.19635 1.06518 1.10473 0.92382 1.25911 0.98616 1.00071 0.94406 1.70065 1.37720 1.35331 1.13845 0.85314 0.78118 0.78362 0.78130 1.19193 1.19924 1.18929 1.21851 0.91736 0.95326 0.90228 1.21587 1.01211 0.95678 0.98224 1.22252 0.93294 0.99819 0.92032 1.58735 1.06660 1.52815 1.18976 1.22854 0.93144 0.97899 1.01740 0.88425 0.95307 0.91906 0.93793 0.93007 0.94045 0.86840 0.93264 0.94065 1.00069 1.00110 0.92093 0.92852 0.93368 0.90203 0.89913 0.96333 0.83582 0.84236 0.87925 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.89 113.37 1.23 1.97 16 2 O -0.40 -12.68 10.51 -148.98 -1.57 -14.25 16 3 C 0.07 2.19 3.48 31.98 0.11 2.30 16 4 H 0.08 2.20 7.90 -2.39 -0.02 2.18 16 5 C 0.05 1.67 4.64 86.77 0.40 2.07 16 6 N -0.52 -15.70 4.89 -836.52 -4.09 -19.79 16 7 C 0.06 1.83 4.35 86.30 0.38 2.21 16 8 C 0.05 1.96 6.09 71.98 0.44 2.40 16 9 O -0.40 -19.41 6.76 -148.98 -1.01 -20.42 16 10 C 0.21 12.05 5.69 71.23 0.41 12.45 16 11 C -0.54 -32.54 9.43 25.60 0.24 -32.30 16 12 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 13 C 0.01 0.50 5.46 84.66 0.46 0.96 16 14 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 15 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 C 0.10 2.27 0.96 3.87 0.00 2.27 16 20 C -0.11 -2.23 8.54 71.98 0.61 -1.62 16 21 C 0.06 1.17 4.39 86.30 0.38 1.55 16 22 N -0.84 -12.98 8.84 -186.73 -1.65 -14.63 16 23 C -0.12 -2.75 4.68 31.78 0.15 -2.60 16 24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 27 H 0.04 1.91 6.39 -2.39 -0.02 1.89 16 28 H 0.05 2.20 7.79 -2.38 -0.02 2.18 16 29 H 0.04 1.28 6.32 -2.39 -0.02 1.27 16 30 H 0.11 2.71 6.89 -2.39 -0.02 2.69 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 34 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.41 7.56 -2.39 -0.02 1.40 16 39 H 0.08 1.64 6.64 -2.39 -0.02 1.62 16 40 H 0.02 0.43 6.68 -2.39 -0.02 0.41 16 41 H 0.35 4.32 9.08 -89.69 -0.81 3.51 16 42 H 0.34 4.88 7.86 -89.69 -0.70 4.17 16 43 H 0.10 1.90 7.83 -2.39 -0.02 1.88 16 44 H 0.07 1.65 7.78 -2.39 -0.02 1.63 16 Total: -1.00 -68.04 341.86 -1.72 -69.76 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.54 Total: 17.10 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.82 Total: -8.34 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -5.46 Total: -90.70 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -2.57 Total: -34.67 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.04 -1.72 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708951268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.806 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds