Wall clock time and date at job start Mon Mar 30 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 120.00132 * 2 1 4 4 O 1.21276 * 119.99524 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00097 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.46762 * 319.99750 * 5 3 2 7 7 N 1.46897 * 109.46971 * 200.00139 * 5 3 2 8 8 C 1.52994 * 109.47021 * 79.99539 * 5 3 2 9 9 C 1.52996 * 109.47119 * 184.99834 * 8 5 3 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.46504 * 119.99612 * 180.02562 * 2 1 3 19 19 H 1.08998 * 110.45556 * 177.39838 * 18 2 1 20 20 C 1.54478 * 110.51313 * 54.64053 * 18 2 1 21 21 O 1.44424 * 104.80480 * 217.37689 * 20 18 2 22 22 C 1.44430 * 105.27552 * 40.51113 * 21 20 18 23 23 C 1.54482 * 104.79909 * 319.49066 * 22 21 20 24 24 H 1.08999 * 110.62534 * 265.27217 * 23 22 21 25 25 O 1.42904 * 110.50889 * 142.62324 * 23 22 21 26 26 H 1.08998 * 109.47099 * 89.99647 * 1 2 3 27 27 H 1.08998 * 109.47374 * 210.00131 * 1 2 3 28 28 H 1.09005 * 109.46865 * 329.99898 * 1 2 3 29 29 H 1.00900 * 110.99419 * 176.05116 * 7 5 3 30 30 H 1.00906 * 110.99511 * 299.99573 * 7 5 3 31 31 H 1.09004 * 109.46806 * 65.00097 * 8 5 3 32 32 H 1.09000 * 109.47828 * 305.00401 * 8 5 3 33 33 H 1.09004 * 109.47066 * 60.00422 * 9 8 5 34 34 H 1.08994 * 109.47405 * 300.00252 * 9 8 5 35 35 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 36 36 H 1.08999 * 110.37193 * 336.20877 * 20 18 2 37 37 H 1.09005 * 110.37083 * 98.54759 * 20 18 2 38 38 H 1.08998 * 110.37171 * 200.65859 * 22 21 20 39 39 H 1.08997 * 110.46476 * 78.36619 * 22 21 20 40 40 H 0.96703 * 114.00107 * 65.35003 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.5218 2.3935 -0.6597 7 7 2.2676 3.5471 -0.4732 8 6 0.9140 2.7884 1.4214 9 6 0.0442 4.0469 1.4020 10 6 -0.4196 4.3585 2.8015 11 1 -0.1233 3.7228 3.6228 12 6 -1.2172 5.4589 3.0345 13 7 -1.5777 6.2332 2.0345 14 14 -1.7858 5.8495 4.7704 15 1 -0.7948 6.7391 5.4275 16 1 -3.1042 6.5309 4.7178 17 1 -1.9105 4.5893 5.5459 18 6 2.1974 -1.2688 -0.0006 19 1 3.2714 -1.0887 -0.0468 20 6 1.7429 -2.1557 -1.1809 21 8 1.7501 -3.5011 -0.6558 22 6 1.2140 -3.3907 0.6808 23 6 1.8415 -2.0999 1.2523 24 1 2.7395 -2.3307 1.8254 25 8 0.8963 -1.4010 2.0649 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.7676 4.4207 -0.5432 30 1 3.0764 3.6402 0.1229 31 1 1.7796 2.9547 2.0627 32 1 0.3325 1.9506 1.8061 33 1 -0.8213 3.8805 0.7606 34 1 0.6258 4.8846 1.0173 35 1 -2.1392 7.0071 2.1983 36 1 0.7381 -1.8780 -1.4993 37 1 2.4428 -2.0691 -2.0121 38 1 1.5075 -4.2528 1.2797 39 1 0.1280 -3.3031 0.6498 40 1 0.6374 -1.8777 2.8655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709189148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:23 Heat of formation + Delta-G solvation = -123.538748 kcal Electronic energy + Delta-G solvation = -22137.222282 eV Core-core repulsion = 18759.279597 eV Total energy + Delta-G solvation = -3377.942684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64556 -39.06106 -36.43878 -35.50712 -35.05978 -32.84267 -30.50053 -29.85498 -28.83445 -26.76039 -26.32565 -24.03937 -23.07717 -21.31971 -20.23342 -19.05278 -18.10828 -17.12493 -16.77368 -16.26221 -15.95470 -15.67276 -15.25919 -14.78564 -14.50853 -14.28877 -14.04941 -13.67734 -13.34843 -13.24535 -12.84738 -12.50471 -12.22192 -12.10994 -12.00290 -11.75427 -11.65407 -11.30782 -11.03274 -10.89859 -10.67697 -10.45044 -10.01672 -9.92896 -9.85004 -9.24841 -9.15190 -8.51404 -8.42683 -8.15220 -6.07624 -4.10406 2.89013 2.93273 3.27430 3.34126 3.37070 3.61721 4.02683 4.25999 4.39712 4.42846 4.65730 4.85261 4.91098 4.96824 5.22164 5.28655 5.30300 5.40150 5.41244 5.47697 5.59296 5.66984 5.71665 5.81632 6.02443 6.26536 6.35717 6.57507 6.62317 6.91342 7.35066 7.41967 7.53423 7.61433 7.67084 7.89747 7.93408 8.32706 8.44602 8.95546 9.54313 11.03343 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.004477 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.380594 B = 6253.257738 C = 6919.486616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.593 5.593 3 C 0.530 3.470 4 O -0.543 6.543 5 C 0.077 3.923 6 H 0.096 0.904 7 N -0.831 5.831 8 C -0.138 4.138 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.116 3.884 19 H 0.119 0.881 20 C 0.035 3.965 21 O -0.367 6.367 22 C 0.013 3.987 23 C 0.058 3.942 24 H 0.077 0.923 25 O -0.538 6.538 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.354 0.646 30 H 0.345 0.655 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -17.735 -3.534 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.327 5.327 3 C 0.319 3.681 4 O -0.419 6.419 5 C -0.038 4.038 6 H 0.114 0.886 7 N -0.363 5.363 8 C -0.177 4.177 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.011 3.989 19 H 0.137 0.863 20 C -0.042 4.042 21 O -0.285 6.285 22 C -0.064 4.064 23 C -0.003 4.003 24 H 0.095 0.905 25 O -0.343 6.343 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.095 -17.750 -4.838 18.848 hybrid contribution -0.822 0.412 2.498 2.662 sum 3.273 -17.338 -2.340 17.799 Atomic orbital electron populations 1.22013 0.78757 1.05259 1.00778 1.47403 1.07185 1.04106 1.74012 1.20962 0.87869 0.85311 0.73942 1.90605 1.14285 1.87268 1.49777 1.21468 0.94958 0.88970 0.98407 0.88595 1.58765 1.10956 1.09330 1.57296 1.22409 1.00648 1.01726 0.92939 1.19103 0.93992 0.90676 0.97472 1.21179 1.30822 1.10483 0.93523 0.92741 1.25006 0.96127 0.96171 0.96978 1.69953 1.36556 1.16036 1.30703 0.86591 0.78091 0.78492 0.84818 1.20658 1.21169 1.19898 1.22419 0.99532 0.84280 0.92717 0.86343 1.23835 1.02382 0.81387 0.96623 1.89172 1.84696 1.26488 1.28113 1.24237 0.99005 0.98610 0.84593 1.23525 0.92535 0.91343 0.92897 0.90546 1.86725 1.62142 1.47440 1.37994 0.93556 0.89877 0.89517 0.83092 0.84218 0.92853 0.91902 0.96364 0.96480 0.92910 0.91074 0.88060 0.88667 0.91078 0.77535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 7.83 59.85 0.47 1.38 16 2 N -0.59 -8.34 2.47 -172.14 -0.42 -8.76 16 3 C 0.53 9.25 6.93 -10.99 -0.08 9.17 16 4 O -0.54 -10.91 15.61 5.56 0.09 -10.82 16 5 C 0.08 1.36 2.36 -68.87 -0.16 1.20 16 6 H 0.10 1.62 7.21 -51.93 -0.37 1.24 16 7 N -0.83 -14.81 8.94 -5.66 -0.05 -14.86 16 8 C -0.14 -2.77 4.45 -26.74 -0.12 -2.88 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 10 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.12 1.41 3.53 -66.36 -0.23 1.18 16 19 H 0.12 1.62 6.98 -51.93 -0.36 1.26 16 20 C 0.04 0.37 7.23 37.93 0.27 0.64 16 21 O -0.37 -3.95 11.65 -35.23 -0.41 -4.36 16 22 C 0.01 0.11 7.38 37.94 0.28 0.39 16 23 C 0.06 0.57 4.25 -25.16 -0.11 0.46 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 O -0.54 -5.52 9.94 -35.23 -0.35 -5.87 16 26 H 0.05 0.50 7.89 -51.93 -0.41 0.09 16 27 H 0.08 0.91 6.02 -51.93 -0.31 0.60 16 28 H 0.09 1.22 4.83 -51.93 -0.25 0.97 16 29 H 0.35 6.26 7.55 -39.29 -0.30 5.97 16 30 H 0.34 6.23 8.58 -39.29 -0.34 5.89 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.24 6.43 -51.93 -0.33 0.90 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.38 2.25 9.12 45.56 0.42 2.67 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -32.79 319.15 -5.89 -38.68 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.05 Total: 11.31 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.22 Total: -1.08 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.26 Total: -48.88 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.67 Total: -21.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.79 -5.89 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709189148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.861 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds