Wall clock time and date at job start Mon Mar 30 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34782 * 119.99836 * 2 1 4 4 O 1.21277 * 119.99700 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99913 * 359.97438 * 3 2 1 6 6 H 1.08997 * 109.47677 * 320.00491 * 5 3 2 7 7 N 1.46902 * 109.47090 * 200.00080 * 5 3 2 8 8 C 1.53007 * 109.46802 * 80.00701 * 5 3 2 9 9 C 1.52998 * 109.46873 * 184.99499 * 8 5 3 10 10 C 1.50699 * 109.46700 * 179.97438 * 9 8 5 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.46495 * 119.99839 * 179.97438 * 2 1 3 19 19 H 1.08999 * 110.74895 * 182.01487 * 18 2 1 20 20 C 1.54384 * 110.84614 * 58.55284 * 18 2 1 21 21 O 1.43237 * 107.58429 * 220.45176 * 20 18 2 22 22 C 1.43643 * 109.97335 * 358.28491 * 21 20 18 23 23 C 1.54937 * 105.13718 * 24.43083 * 22 21 20 24 24 H 1.09001 * 111.12593 * 81.46916 * 23 22 21 25 25 O 1.42900 * 111.12773 * 205.63850 * 23 22 21 26 26 H 1.09001 * 109.46878 * 90.00378 * 1 2 3 27 27 H 1.08993 * 109.47176 * 210.00282 * 1 2 3 28 28 H 1.08995 * 109.46926 * 330.00564 * 1 2 3 29 29 H 1.00901 * 111.00171 * 176.05400 * 7 5 3 30 30 H 1.00901 * 110.99794 * 300.00974 * 7 5 3 31 31 H 1.09004 * 109.47180 * 64.99595 * 8 5 3 32 32 H 1.08997 * 109.46702 * 304.99766 * 8 5 3 33 33 H 1.09004 * 109.47139 * 60.00071 * 9 8 5 34 34 H 1.08997 * 109.47675 * 299.99671 * 9 8 5 35 35 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.82781 * 339.96014 * 20 18 2 37 37 H 1.08996 * 109.83659 * 100.93920 * 20 18 2 38 38 H 1.09002 * 110.30644 * 143.34527 * 22 21 20 39 39 H 1.09000 * 110.31142 * 265.51087 * 22 21 20 40 40 H 0.96704 * 113.99548 * 291.55487 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5222 2.3932 -0.6614 7 7 2.2678 3.5470 -0.4742 8 6 0.9131 2.7891 1.4199 9 6 0.0432 4.0475 1.3993 10 6 -0.4225 4.3591 2.7982 11 1 -0.1272 3.7235 3.6199 12 6 -1.2256 5.4558 3.0292 13 7 -1.6316 5.7281 4.2502 14 14 -1.7369 6.5550 1.6081 15 1 -3.0101 6.0557 1.0293 16 1 -0.6797 6.5398 0.5653 17 1 -1.9274 7.9433 2.0996 18 6 2.1975 -1.2687 0.0006 19 1 3.2728 -1.0938 0.0363 20 6 1.8203 -2.1214 -1.2299 21 8 1.7126 -3.4824 -0.7967 22 6 2.0286 -3.5788 0.6012 23 6 1.7401 -2.1706 1.1793 24 1 0.6776 -2.0401 1.3843 25 8 2.5221 -1.9241 2.3497 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.7679 4.4206 -0.5450 30 1 3.0763 3.6404 0.1223 31 1 1.7782 2.9558 2.0617 32 1 0.3313 1.9514 1.8045 33 1 -0.8219 3.8808 0.7574 34 1 0.6250 4.8852 1.0147 35 1 -2.1969 6.4994 4.4126 36 1 0.8654 -1.7853 -1.6340 37 1 2.5959 -2.0359 -1.9910 38 1 1.3933 -4.3226 1.0822 39 1 3.0797 -3.8347 0.7348 40 1 2.2716 -2.4651 3.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709189182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:28 Heat of formation + Delta-G solvation = -123.514275 kcal Electronic energy + Delta-G solvation = -21953.212220 eV Core-core repulsion = 18575.270597 eV Total energy + Delta-G solvation = -3377.941623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70038 -39.21498 -36.50001 -35.74159 -35.44285 -32.84076 -30.56596 -30.34673 -29.03209 -27.06950 -26.71718 -24.04617 -22.85050 -21.40907 -20.28543 -19.23570 -18.21446 -17.34525 -17.09265 -16.69605 -16.05727 -15.56755 -15.19037 -15.10495 -14.51027 -14.27332 -14.04940 -13.79961 -13.61065 -13.28396 -13.02587 -12.87421 -12.71559 -12.59393 -12.36405 -11.97551 -11.83955 -11.38031 -11.15560 -10.99328 -10.49316 -10.37724 -10.10783 -9.91119 -9.86302 -9.42495 -9.34291 -8.74926 -8.64724 -8.35481 -6.14270 -4.14072 2.72861 2.76203 3.22504 3.29346 3.31474 3.32404 4.01829 4.10395 4.35110 4.43680 4.59102 4.63102 4.83992 4.88136 4.99539 5.05452 5.18556 5.26227 5.32362 5.38977 5.41997 5.46331 5.56047 5.62916 5.71883 6.10431 6.26864 6.35083 6.53729 6.61351 7.06262 7.17005 7.19319 7.28952 7.44134 7.63600 7.75067 8.27087 8.41846 8.89719 9.46832 10.98917 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004316 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.065485 B = 6485.279884 C = 6828.168115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.608 5.608 3 C 0.532 3.468 4 O -0.529 6.529 5 C 0.073 3.927 6 H 0.098 0.902 7 N -0.831 5.831 8 C -0.131 4.131 9 C -0.010 4.010 10 C -0.524 4.524 11 H 0.071 0.929 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.265 1.265 17 H -0.287 1.287 18 C 0.117 3.883 19 H 0.124 0.876 20 C 0.043 3.957 21 O -0.375 6.375 22 C 0.022 3.978 23 C 0.055 3.945 24 H 0.083 0.917 25 O -0.543 6.543 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.351 0.649 30 H 0.348 0.652 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -16.547 -8.987 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.343 5.343 3 C 0.321 3.679 4 O -0.404 6.404 5 C -0.042 4.042 6 H 0.116 0.884 7 N -0.363 5.363 8 C -0.171 4.171 9 C -0.048 4.048 10 C -0.562 4.562 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.190 1.190 17 H -0.213 1.213 18 C 0.011 3.989 19 H 0.142 0.858 20 C -0.034 4.034 21 O -0.293 6.293 22 C -0.056 4.056 23 C -0.006 4.006 24 H 0.101 0.899 25 O -0.348 6.348 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.384 -16.564 -10.085 19.882 hybrid contribution -0.989 0.779 0.907 1.551 sum 3.395 -15.785 -9.178 18.573 Atomic orbital electron populations 1.22056 0.79111 1.04504 1.02314 1.47628 1.06955 1.04745 1.75004 1.20875 0.87950 0.85032 0.74092 1.90638 1.14129 1.87046 1.48574 1.21537 0.95125 0.89221 0.98312 0.88391 1.58746 1.10991 1.09059 1.57503 1.22257 1.00798 1.00844 0.93173 1.19577 0.94374 0.92460 0.98341 1.21054 1.30890 1.11796 0.92467 0.91069 1.25040 0.95495 0.97298 0.95547 1.69911 1.35632 1.28338 1.19997 0.86769 0.79370 0.80087 0.82967 1.20243 1.18974 1.21314 1.22395 1.00216 0.83867 0.92382 0.85799 1.23452 1.02621 0.81119 0.96237 1.88448 1.90946 1.25947 1.23985 1.24035 1.01766 0.97506 0.82245 1.23871 0.95869 0.93802 0.87010 0.89893 1.86621 1.60435 1.66305 1.21479 0.92138 0.91040 0.88973 0.83382 0.83802 0.91913 0.91723 0.96797 0.96536 0.92606 0.90094 0.90122 0.89081 0.90878 0.77049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.76 59.85 0.52 1.18 16 2 N -0.61 -8.02 2.89 -171.71 -0.50 -8.52 16 3 C 0.53 8.77 6.93 -10.98 -0.08 8.70 16 4 O -0.53 -10.37 15.62 5.56 0.09 -10.28 16 5 C 0.07 1.18 2.37 -68.86 -0.16 1.01 16 6 H 0.10 1.43 7.21 -51.93 -0.37 1.05 16 7 N -0.83 -13.51 8.94 -5.65 -0.05 -13.56 16 8 C -0.13 -2.45 4.45 -26.73 -0.12 -2.57 16 9 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 10 C -0.52 -14.32 9.66 -34.44 -0.33 -14.66 16 11 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 12 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 14 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.12 1.42 3.16 -65.99 -0.21 1.21 16 19 H 0.12 1.81 7.00 -51.93 -0.36 1.45 16 20 C 0.04 0.45 7.44 37.88 0.28 0.73 16 21 O -0.37 -4.02 11.36 -35.23 -0.40 -4.42 16 22 C 0.02 0.19 7.52 38.18 0.29 0.48 16 23 C 0.06 0.56 4.01 -24.49 -0.10 0.46 16 24 H 0.08 0.76 6.07 -51.93 -0.32 0.44 16 25 O -0.54 -6.05 13.48 -35.23 -0.48 -6.53 16 26 H 0.06 0.52 7.89 -51.93 -0.41 0.11 16 27 H 0.07 0.62 6.05 -51.93 -0.31 0.31 16 28 H 0.09 1.08 4.83 -51.93 -0.25 0.83 16 29 H 0.35 5.49 7.55 -39.29 -0.30 5.19 16 30 H 0.35 5.82 8.58 -39.29 -0.34 5.49 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.17 6.43 -51.93 -0.33 0.84 16 33 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 34 H 0.02 0.36 5.93 -51.93 -0.31 0.05 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 0.76 6.96 -51.93 -0.36 0.40 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.38 2.36 9.12 45.56 0.42 2.78 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -33.92 318.08 -5.46 -39.38 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.92 Total: 11.28 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.11 Total: -1.97 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.23 Total: -48.39 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.79 Total: -21.23 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.92 -5.46 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709189182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.130 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds