Wall clock time and date at job start Mon Mar 30 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34782 * 119.99836 * 2 1 4 4 O 1.21277 * 119.99700 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99913 * 359.97438 * 3 2 1 6 6 H 1.08997 * 109.47677 * 320.00491 * 5 3 2 7 7 N 1.46902 * 109.47090 * 200.00080 * 5 3 2 8 8 C 1.53007 * 109.46802 * 80.00701 * 5 3 2 9 9 C 1.52998 * 109.46873 * 184.99499 * 8 5 3 10 10 C 1.50699 * 109.46700 * 179.97438 * 9 8 5 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.46495 * 119.99839 * 179.97438 * 2 1 3 19 19 H 1.08999 * 110.74895 * 182.01487 * 18 2 1 20 20 C 1.54384 * 110.84614 * 58.55284 * 18 2 1 21 21 O 1.43237 * 107.58429 * 220.45176 * 20 18 2 22 22 C 1.43643 * 109.97335 * 358.28491 * 21 20 18 23 23 C 1.54937 * 105.13718 * 24.43083 * 22 21 20 24 24 H 1.09001 * 111.12593 * 81.46916 * 23 22 21 25 25 O 1.42900 * 111.12773 * 205.63850 * 23 22 21 26 26 H 1.09001 * 109.46878 * 90.00378 * 1 2 3 27 27 H 1.08993 * 109.47176 * 210.00282 * 1 2 3 28 28 H 1.08995 * 109.46926 * 330.00564 * 1 2 3 29 29 H 1.00901 * 111.00171 * 176.05400 * 7 5 3 30 30 H 1.00901 * 110.99794 * 300.00974 * 7 5 3 31 31 H 1.09004 * 109.47180 * 64.99595 * 8 5 3 32 32 H 1.08997 * 109.46702 * 304.99766 * 8 5 3 33 33 H 1.09004 * 109.47139 * 60.00071 * 9 8 5 34 34 H 1.08997 * 109.47675 * 299.99671 * 9 8 5 35 35 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.82781 * 339.96014 * 20 18 2 37 37 H 1.08996 * 109.83659 * 100.93920 * 20 18 2 38 38 H 1.09002 * 110.30644 * 143.34527 * 22 21 20 39 39 H 1.09000 * 110.31142 * 265.51087 * 22 21 20 40 40 H 0.96704 * 113.99548 * 291.55487 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5222 2.3932 -0.6614 7 7 2.2678 3.5470 -0.4742 8 6 0.9131 2.7891 1.4199 9 6 0.0432 4.0475 1.3993 10 6 -0.4225 4.3591 2.7982 11 1 -0.1272 3.7235 3.6199 12 6 -1.2256 5.4558 3.0292 13 7 -1.6316 5.7281 4.2502 14 14 -1.7369 6.5550 1.6081 15 1 -3.0101 6.0557 1.0293 16 1 -0.6797 6.5398 0.5653 17 1 -1.9274 7.9433 2.0996 18 6 2.1975 -1.2687 0.0006 19 1 3.2728 -1.0938 0.0363 20 6 1.8203 -2.1214 -1.2299 21 8 1.7126 -3.4824 -0.7967 22 6 2.0286 -3.5788 0.6012 23 6 1.7401 -2.1706 1.1793 24 1 0.6776 -2.0401 1.3843 25 8 2.5221 -1.9241 2.3497 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.7679 4.4206 -0.5450 30 1 3.0763 3.6404 0.1223 31 1 1.7782 2.9558 2.0617 32 1 0.3313 1.9514 1.8045 33 1 -0.8219 3.8808 0.7574 34 1 0.6250 4.8852 1.0147 35 1 -2.1969 6.4994 4.4126 36 1 0.8654 -1.7853 -1.6340 37 1 2.5959 -2.0359 -1.9910 38 1 1.3933 -4.3226 1.0822 39 1 3.0797 -3.8347 0.7348 40 1 2.2716 -2.4651 3.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709189182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:27 Heat of formation + Delta-G solvation = -153.716563 kcal Electronic energy + Delta-G solvation = -21954.521890 eV Core-core repulsion = 18575.270597 eV Total energy + Delta-G solvation = -3379.251293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71442 -40.26343 -37.32855 -37.20883 -36.53205 -34.82353 -32.10320 -31.48967 -29.80145 -28.38315 -27.88334 -25.60078 -23.70172 -22.62101 -21.77934 -20.32372 -19.34625 -18.84857 -18.25103 -17.97952 -16.91300 -16.61688 -16.29766 -16.22815 -15.99967 -15.84707 -15.26278 -14.97777 -14.70908 -14.63561 -14.19260 -14.08170 -13.85226 -13.62802 -13.52553 -13.35630 -12.89236 -12.85887 -12.70091 -12.12613 -11.97943 -11.84949 -11.67254 -11.41164 -11.26724 -10.79452 -10.76319 -10.61244 -9.80223 -9.66825 -8.29280 -6.35057 1.38840 1.41615 1.47694 1.52427 1.72101 2.36965 2.54561 3.06422 3.22385 3.30994 3.47201 3.66182 3.70085 3.82231 4.03634 4.04640 4.05843 4.13146 4.20949 4.51459 4.57323 4.64317 4.66213 4.69147 4.70877 4.75858 4.89599 4.96129 5.34685 5.38741 5.45029 5.62431 5.76038 5.97824 6.23562 6.25836 6.45636 6.72158 6.73294 7.05370 7.29904 8.87524 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004316 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.065485 B = 6485.279884 C = 6828.168115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.601 5.601 3 C 0.525 3.475 4 O -0.570 6.570 5 C 0.083 3.917 6 H 0.123 0.877 7 N -0.831 5.831 8 C -0.118 4.118 9 C -0.005 4.005 10 C -0.534 4.534 11 H 0.025 0.975 12 C 0.004 3.996 13 N -0.953 5.953 14 Si 0.953 3.047 15 H -0.262 1.262 16 H -0.239 1.239 17 H -0.291 1.291 18 C 0.107 3.893 19 H 0.092 0.908 20 C 0.052 3.948 21 O -0.385 6.385 22 C 0.027 3.973 23 C 0.059 3.941 24 H 0.098 0.902 25 O -0.570 6.570 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.356 0.644 30 H 0.344 0.656 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -17.327 -11.290 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.334 5.334 3 C 0.314 3.686 4 O -0.448 6.448 5 C -0.032 4.032 6 H 0.141 0.859 7 N -0.362 5.362 8 C -0.158 4.158 9 C -0.042 4.042 10 C -0.572 4.572 11 H 0.043 0.957 12 C -0.193 4.193 13 N -0.593 5.593 14 Si 0.776 3.224 15 H -0.187 1.187 16 H -0.162 1.162 17 H -0.217 1.217 18 C 0.002 3.998 19 H 0.110 0.890 20 C -0.026 4.026 21 O -0.304 6.304 22 C -0.050 4.050 23 C -0.002 4.002 24 H 0.116 0.884 25 O -0.379 6.379 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.085 -17.398 -12.393 21.582 hybrid contribution -0.568 0.923 1.747 2.056 sum 2.517 -16.475 -10.646 19.776 Atomic orbital electron populations 1.22302 0.77102 1.05032 1.04247 1.47650 1.08159 1.04219 1.73372 1.20946 0.87524 0.86042 0.74073 1.90621 1.15752 1.87683 1.50762 1.21461 0.95792 0.89224 0.96693 0.85885 1.58764 1.10895 1.09388 1.57198 1.22057 0.99283 0.99650 0.94828 1.19497 0.95490 0.94059 0.95159 1.21409 1.30650 1.11097 0.94053 0.95657 1.26065 0.95523 0.99115 0.98580 1.70083 1.37025 1.29389 1.22853 0.85619 0.80066 0.77187 0.79538 1.18714 1.16177 1.21712 1.22483 0.98555 0.83983 0.94811 0.88953 1.23383 1.03348 0.80702 0.95146 1.88437 1.91033 1.25901 1.25047 1.24115 1.02410 0.97188 0.81309 1.23894 0.96249 0.93921 0.86103 0.88419 1.86577 1.61226 1.67383 1.22694 0.89446 0.88938 0.90089 0.82860 0.84302 0.94436 0.91440 0.94774 0.95728 0.92526 0.88518 0.90226 0.86259 0.91109 0.74761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.97 8.76 127.77 1.12 2.09 16 2 N -0.60 -14.94 2.89 -815.56 -2.36 -17.30 16 3 C 0.53 16.97 6.93 87.66 0.61 17.57 16 4 O -0.57 -22.65 15.62 -3.02 -0.05 -22.69 16 5 C 0.08 2.55 2.37 44.17 0.10 2.65 16 6 H 0.12 3.16 7.21 -2.39 -0.02 3.14 16 7 N -0.83 -25.79 8.94 -171.79 -1.54 -27.33 16 8 C -0.12 -4.35 4.45 30.60 0.14 -4.22 16 9 C 0.00 -0.19 3.81 29.85 0.11 -0.08 16 10 C -0.53 -29.55 9.66 25.60 0.25 -29.31 16 11 H 0.03 1.57 7.99 -2.91 -0.02 1.55 16 12 C 0.00 0.22 5.47 84.65 0.46 0.68 16 13 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 14 Si 0.95 41.77 27.47 68.60 1.88 43.66 16 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.24 -9.38 6.54 99.48 0.65 -8.72 16 17 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 18 C 0.11 2.49 3.16 46.25 0.15 2.64 16 19 H 0.09 2.78 7.00 -2.39 -0.02 2.76 16 20 C 0.05 0.97 7.44 72.45 0.54 1.50 16 21 O -0.39 -7.37 11.36 -148.98 -1.69 -9.06 16 22 C 0.03 0.40 7.52 72.64 0.55 0.95 16 23 C 0.06 1.08 4.01 32.05 0.13 1.21 16 24 H 0.10 1.50 6.07 -2.39 -0.01 1.49 16 25 O -0.57 -12.27 13.48 -148.98 -2.01 -14.28 16 26 H 0.09 1.15 7.89 -2.39 -0.02 1.13 16 27 H 0.09 1.28 6.05 -2.39 -0.01 1.27 16 28 H 0.08 1.68 4.83 -2.39 -0.01 1.66 16 29 H 0.36 10.29 7.55 -89.69 -0.68 9.61 16 30 H 0.34 11.38 8.58 -89.69 -0.77 10.61 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.42 6.43 -2.39 -0.02 2.40 16 33 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 34 H 0.02 1.01 5.93 -2.39 -0.01 1.00 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.10 1.50 6.96 -2.39 -0.02 1.49 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.40 4.50 9.12 -74.05 -0.68 3.82 16 Total: -1.00 -75.37 318.08 -2.39 -77.77 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -1.09 Total: 31.90 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 4.15 Total: -4.30 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.59 Total: -102.99 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -3.75 Total: -46.04 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Total: -75.37 -2.39 -77.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709189182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.951 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds