Wall clock time and date at job start Mon Mar 30 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34785 * 119.99932 * 2 1 4 4 O 1.21276 * 119.99637 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99764 * 359.97438 * 3 2 1 6 6 H 1.08998 * 109.47446 * 40.00188 * 5 3 2 7 7 N 1.46905 * 109.46698 * 160.00318 * 5 3 2 8 8 C 1.52997 * 109.47139 * 279.99894 * 5 3 2 9 9 C 1.53006 * 109.47127 * 175.00058 * 8 5 3 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 5 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.46504 * 120.00189 * 179.97438 * 2 1 3 19 19 H 1.09003 * 110.75175 * 182.01889 * 18 2 1 20 20 C 1.54381 * 110.84539 * 58.55034 * 18 2 1 21 21 O 1.43232 * 107.59167 * 220.45503 * 20 18 2 22 22 C 1.43651 * 109.97003 * 358.28705 * 21 20 18 23 23 C 1.54946 * 105.13282 * 24.42790 * 22 21 20 24 24 H 1.09000 * 111.12571 * 81.47871 * 23 22 21 25 25 O 1.42909 * 111.12329 * 205.63598 * 23 22 21 26 26 H 1.09008 * 109.46857 * 90.00261 * 1 2 3 27 27 H 1.08999 * 109.47484 * 210.00043 * 1 2 3 28 28 H 1.09000 * 109.47402 * 330.00466 * 1 2 3 29 29 H 1.00896 * 111.00242 * 60.00197 * 7 5 3 30 30 H 1.00908 * 110.99414 * 183.95624 * 7 5 3 31 31 H 1.09001 * 109.46832 * 55.00379 * 8 5 3 32 32 H 1.09001 * 109.47502 * 294.99901 * 8 5 3 33 33 H 1.08998 * 109.46509 * 60.00429 * 9 8 5 34 34 H 1.08993 * 109.46955 * 299.99989 * 9 8 5 35 35 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 36 36 H 1.09006 * 109.82924 * 339.96679 * 20 18 2 37 37 H 1.09003 * 109.83427 * 100.93542 * 20 18 2 38 38 H 1.08994 * 110.31063 * 143.34697 * 22 21 20 39 39 H 1.09003 * 110.30722 * 265.51795 * 22 21 20 40 40 H 0.96697 * 113.99614 * 291.55958 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.5217 2.3935 0.6597 7 7 2.2675 3.5472 0.4732 8 6 0.9140 2.7884 -1.4214 9 6 0.0440 4.0469 -1.4020 10 6 -0.4198 4.3586 -2.8015 11 1 -0.1240 3.7225 -3.6227 12 6 -1.2226 5.4553 -3.0336 13 7 -1.5832 6.2296 -2.0336 14 14 -1.7981 5.8412 -4.7683 15 1 -2.6424 7.0628 -4.7495 16 1 -2.5899 4.6996 -5.2927 17 1 -0.6190 6.0685 -5.6420 18 6 2.1975 -1.2687 0.0006 19 1 3.2728 -1.0938 0.0364 20 6 1.8203 -2.1214 -1.2299 21 8 1.7126 -3.4825 -0.7968 22 6 2.0285 -3.5789 0.6012 23 6 1.7401 -2.1705 1.1792 24 1 0.6775 -2.0401 1.3843 25 8 2.5220 -1.9242 2.3498 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 3.0763 3.6404 -0.1228 30 1 1.7674 4.4208 0.5433 31 1 0.3324 1.9506 -1.8061 32 1 1.7794 2.9549 -2.0628 33 1 0.6256 4.8846 -1.0173 34 1 -0.8215 3.8804 -0.7607 35 1 -1.2847 6.0290 -1.1327 36 1 0.8654 -1.7853 -1.6340 37 1 2.5959 -2.0358 -1.9910 38 1 1.3934 -4.3227 1.0822 39 1 3.0797 -3.8346 0.7347 40 1 2.2715 -2.4652 3.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709200019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:33 Heat of formation + Delta-G solvation = -130.820383 kcal Electronic energy + Delta-G solvation = -21883.505599 eV Core-core repulsion = 18505.247159 eV Total energy + Delta-G solvation = -3378.258440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71018 -39.21489 -36.56429 -35.74548 -35.44879 -33.14908 -30.57229 -29.76932 -29.04255 -27.03720 -26.25619 -23.83938 -22.91542 -21.66642 -20.63950 -19.17985 -18.27109 -17.43569 -17.12184 -16.57504 -16.08041 -15.53315 -15.28659 -15.01246 -14.46086 -14.17722 -13.93638 -13.77222 -13.52958 -13.34408 -13.18115 -12.89048 -12.76783 -12.48520 -12.25979 -11.99128 -11.64137 -11.34985 -11.14894 -10.86086 -10.54568 -10.30874 -10.15863 -10.11034 -9.87322 -9.44008 -8.75977 -8.74025 -8.42849 -8.28500 -6.45343 -4.16073 2.72591 2.76018 3.26521 3.38932 3.40346 3.59204 3.98837 4.06208 4.41598 4.46925 4.54781 4.62174 4.81633 4.86566 4.99179 5.02502 5.22673 5.26520 5.31460 5.37418 5.45109 5.52339 5.59328 5.65557 5.75047 6.12809 6.28142 6.36848 6.53582 6.67411 7.15980 7.19909 7.22076 7.30340 7.46851 7.76895 8.08510 8.27361 8.35206 8.78049 9.55928 10.94959 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.004094 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.984927 B = 6837.810704 C = 7401.775611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.531 3.469 4 O -0.530 6.530 5 C 0.075 3.925 6 H 0.098 0.902 7 N -0.830 5.830 8 C -0.131 4.131 9 C 0.012 3.988 10 C -0.605 4.605 11 H 0.048 0.952 12 C 0.017 3.983 13 N -0.910 5.910 14 Si 1.068 2.932 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.288 1.288 18 C 0.117 3.883 19 H 0.124 0.876 20 C 0.042 3.958 21 O -0.374 6.374 22 C 0.022 3.978 23 C 0.056 3.944 24 H 0.083 0.917 25 O -0.544 6.544 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.347 0.653 30 H 0.352 0.648 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -18.034 6.970 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C 0.320 3.680 4 O -0.405 6.405 5 C -0.040 4.040 6 H 0.116 0.884 7 N -0.362 5.362 8 C -0.170 4.170 9 C -0.025 4.025 10 C -0.643 4.643 11 H 0.066 0.934 12 C -0.187 4.187 13 N -0.545 5.545 14 Si 0.896 3.104 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.214 1.214 18 C 0.012 3.988 19 H 0.142 0.858 20 C -0.036 4.036 21 O -0.292 6.292 22 C -0.055 4.055 23 C -0.005 4.005 24 H 0.100 0.900 25 O -0.349 6.349 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.587 -17.109 6.212 18.552 hybrid contribution 0.330 -0.993 0.453 1.140 sum 3.916 -18.102 6.666 19.683 Atomic orbital electron populations 1.21968 0.79091 1.03460 1.02827 1.47641 1.06947 1.04763 1.74990 1.20906 0.87960 0.85060 0.74064 1.90633 1.14127 1.87047 1.48683 1.21542 0.95029 0.89130 0.98321 0.88436 1.58747 1.10910 1.09133 1.57412 1.22258 1.00548 1.01222 0.93015 1.19219 0.93776 0.91357 0.98136 1.21988 1.34904 1.14206 0.93178 0.93364 1.25848 0.94346 0.93024 1.05502 1.70804 1.43964 1.38820 1.00958 0.83551 0.76440 0.76356 0.74048 1.20686 1.21411 1.21432 1.22395 1.00220 0.83857 0.92354 0.85790 1.23486 1.02893 0.80983 0.96231 1.88459 1.90938 1.26009 1.23828 1.24022 1.01753 0.97345 0.82408 1.23873 0.95707 0.93993 0.86930 0.89978 1.86629 1.60561 1.66207 1.21486 0.91566 0.91247 0.89854 0.84003 0.83246 0.92211 0.92499 0.97324 0.97269 0.92125 0.89900 0.90011 0.89121 0.90885 0.77217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 8.47 59.85 0.51 1.26 16 2 N -0.61 -8.30 2.89 -171.71 -0.50 -8.79 16 3 C 0.53 9.11 6.93 -10.98 -0.08 9.03 16 4 O -0.53 -10.70 15.62 5.56 0.09 -10.61 16 5 C 0.07 1.28 2.47 -68.87 -0.17 1.11 16 6 H 0.10 1.56 6.31 -51.93 -0.33 1.24 16 7 N -0.83 -14.45 8.94 -5.66 -0.05 -14.50 16 8 C -0.13 -2.55 4.71 -26.73 -0.13 -2.68 16 9 C 0.01 0.29 4.05 -27.88 -0.11 0.18 16 10 C -0.60 -16.59 9.11 -34.44 -0.31 -16.90 16 11 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 12 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 13 N -0.91 -26.98 13.65 55.43 0.76 -26.22 16 14 Si 1.07 24.72 29.90 -169.99 -5.08 19.63 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.12 1.45 3.16 -65.99 -0.21 1.25 16 19 H 0.12 1.85 7.00 -51.93 -0.36 1.48 16 20 C 0.04 0.46 7.43 37.88 0.28 0.74 16 21 O -0.37 -4.16 11.36 -35.23 -0.40 -4.56 16 22 C 0.02 0.19 7.52 38.18 0.29 0.48 16 23 C 0.06 0.54 4.01 -24.49 -0.10 0.44 16 24 H 0.08 0.69 6.07 -51.93 -0.32 0.38 16 25 O -0.54 -5.58 13.48 -35.23 -0.48 -6.05 16 26 H 0.07 0.72 7.40 -51.92 -0.38 0.33 16 27 H 0.07 0.59 6.05 -51.93 -0.31 0.27 16 28 H 0.08 0.93 5.94 -51.93 -0.31 0.62 16 29 H 0.35 6.14 8.58 -39.29 -0.34 5.81 16 30 H 0.35 6.02 7.55 -39.29 -0.30 5.72 16 31 H 0.06 1.12 6.94 -51.93 -0.36 0.76 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.01 0.21 6.74 -51.93 -0.35 -0.14 16 34 H 0.01 0.22 8.01 -51.93 -0.42 -0.19 16 35 H 0.27 7.85 7.22 -40.82 -0.29 7.56 16 36 H 0.08 0.88 6.96 -51.93 -0.36 0.52 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.38 1.91 9.12 45.56 0.42 2.32 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -34.05 320.68 -5.86 -39.91 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.91 Total: 11.08 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.13 Total: -4.72 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.21 Total: -49.51 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.79 Total: -21.22 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.05 -5.86 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709200019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.911 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds