Wall clock time and date at job start Mon Mar 30 2020 05:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34785 * 119.99932 * 2 1 4 4 O 1.21276 * 119.99637 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99764 * 359.97438 * 3 2 1 6 6 H 1.08998 * 109.47446 * 40.00188 * 5 3 2 7 7 N 1.46905 * 109.46698 * 160.00318 * 5 3 2 8 8 C 1.52997 * 109.47139 * 279.99894 * 5 3 2 9 9 C 1.53006 * 109.47127 * 175.00058 * 8 5 3 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 5 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.46504 * 120.00189 * 179.97438 * 2 1 3 19 19 H 1.09003 * 110.75175 * 182.01889 * 18 2 1 20 20 C 1.54381 * 110.84539 * 58.55034 * 18 2 1 21 21 O 1.43232 * 107.59167 * 220.45503 * 20 18 2 22 22 C 1.43651 * 109.97003 * 358.28705 * 21 20 18 23 23 C 1.54946 * 105.13282 * 24.42790 * 22 21 20 24 24 H 1.09000 * 111.12571 * 81.47871 * 23 22 21 25 25 O 1.42909 * 111.12329 * 205.63598 * 23 22 21 26 26 H 1.09008 * 109.46857 * 90.00261 * 1 2 3 27 27 H 1.08999 * 109.47484 * 210.00043 * 1 2 3 28 28 H 1.09000 * 109.47402 * 330.00466 * 1 2 3 29 29 H 1.00896 * 111.00242 * 60.00197 * 7 5 3 30 30 H 1.00908 * 110.99414 * 183.95624 * 7 5 3 31 31 H 1.09001 * 109.46832 * 55.00379 * 8 5 3 32 32 H 1.09001 * 109.47502 * 294.99901 * 8 5 3 33 33 H 1.08998 * 109.46509 * 60.00429 * 9 8 5 34 34 H 1.08993 * 109.46955 * 299.99989 * 9 8 5 35 35 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 36 36 H 1.09006 * 109.82924 * 339.96679 * 20 18 2 37 37 H 1.09003 * 109.83427 * 100.93542 * 20 18 2 38 38 H 1.08994 * 110.31063 * 143.34697 * 22 21 20 39 39 H 1.09003 * 110.30722 * 265.51795 * 22 21 20 40 40 H 0.96697 * 113.99614 * 291.55958 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 1 0.5217 2.3935 0.6597 7 7 2.2675 3.5472 0.4732 8 6 0.9140 2.7884 -1.4214 9 6 0.0440 4.0469 -1.4020 10 6 -0.4198 4.3586 -2.8015 11 1 -0.1240 3.7225 -3.6227 12 6 -1.2226 5.4553 -3.0336 13 7 -1.5832 6.2296 -2.0336 14 14 -1.7981 5.8412 -4.7683 15 1 -2.6424 7.0628 -4.7495 16 1 -2.5899 4.6996 -5.2927 17 1 -0.6190 6.0685 -5.6420 18 6 2.1975 -1.2687 0.0006 19 1 3.2728 -1.0938 0.0364 20 6 1.8203 -2.1214 -1.2299 21 8 1.7126 -3.4825 -0.7968 22 6 2.0285 -3.5789 0.6012 23 6 1.7401 -2.1705 1.1792 24 1 0.6775 -2.0401 1.3843 25 8 2.5220 -1.9242 2.3498 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 3.0763 3.6404 -0.1228 30 1 1.7674 4.4208 0.5433 31 1 0.3324 1.9506 -1.8061 32 1 1.7794 2.9549 -2.0628 33 1 0.6256 4.8846 -1.0173 34 1 -0.8215 3.8804 -0.7607 35 1 -1.2847 6.0290 -1.1327 36 1 0.8654 -1.7853 -1.6340 37 1 2.5959 -2.0358 -1.9910 38 1 1.3934 -4.3227 1.0822 39 1 3.0797 -3.8346 0.7347 40 1 2.2715 -2.4652 3.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709200019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:32 Heat of formation + Delta-G solvation = -160.054376 kcal Electronic energy + Delta-G solvation = -21884.773280 eV Core-core repulsion = 18505.247159 eV Total energy + Delta-G solvation = -3379.526121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76550 -40.30696 -37.38336 -37.29466 -36.58846 -35.11059 -31.61285 -31.45733 -29.81265 -28.15934 -27.72707 -25.63427 -23.77769 -23.06915 -21.96713 -20.32367 -19.44522 -18.84572 -18.26322 -17.97741 -16.99391 -16.55919 -16.43589 -16.06005 -15.85402 -15.65148 -15.52419 -15.26581 -14.72664 -14.42202 -14.25978 -14.09614 -13.88084 -13.65730 -13.55316 -13.36173 -12.99172 -12.84069 -12.58912 -12.14086 -11.99974 -11.92320 -11.89101 -11.28657 -10.94320 -10.70636 -10.64122 -10.54228 -9.87130 -9.74539 -8.67393 -6.39197 1.41362 1.53343 1.60014 1.64799 1.79632 2.52209 2.55875 3.15926 3.19159 3.26690 3.40615 3.58860 3.65086 3.79084 3.88533 3.99435 4.03548 4.06990 4.19705 4.43482 4.55532 4.58359 4.62636 4.65693 4.66404 4.72923 4.86847 4.90530 5.28915 5.31240 5.39831 5.73408 5.89431 5.97095 6.16674 6.17906 6.34143 6.59122 6.73763 6.98511 7.40716 8.73625 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.004094 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.984927 B = 6837.810704 C = 7401.775611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.599 5.599 3 C 0.527 3.473 4 O -0.569 6.569 5 C 0.083 3.917 6 H 0.113 0.887 7 N -0.831 5.831 8 C -0.113 4.113 9 C 0.016 3.984 10 C -0.621 4.621 11 H 0.046 0.954 12 C -0.033 4.033 13 N -0.935 5.935 14 Si 1.113 2.887 15 H -0.284 1.284 16 H -0.268 1.268 17 H -0.275 1.275 18 C 0.106 3.894 19 H 0.093 0.907 20 C 0.049 3.951 21 O -0.385 6.385 22 C 0.024 3.976 23 C 0.065 3.935 24 H 0.102 0.898 25 O -0.567 6.567 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.344 0.656 30 H 0.353 0.647 31 H 0.070 0.930 32 H 0.041 0.959 33 H -0.003 1.003 34 H 0.002 0.998 35 H 0.258 0.742 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -19.805 6.924 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.332 5.332 3 C 0.316 3.684 4 O -0.447 6.447 5 C -0.032 4.032 6 H 0.131 0.869 7 N -0.362 5.362 8 C -0.153 4.153 9 C -0.021 4.021 10 C -0.658 4.658 11 H 0.064 0.936 12 C -0.231 4.231 13 N -0.572 5.572 14 Si 0.934 3.066 15 H -0.209 1.209 16 H -0.193 1.193 17 H -0.200 1.200 18 C 0.001 3.999 19 H 0.112 0.888 20 C -0.029 4.029 21 O -0.304 6.304 22 C -0.052 4.052 23 C 0.004 3.996 24 H 0.120 0.880 25 O -0.376 6.376 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.487 -18.939 6.197 20.082 hybrid contribution 0.685 -0.504 0.531 1.003 sum 3.172 -19.443 6.727 20.817 Atomic orbital electron populations 1.22217 0.77158 1.05058 1.03657 1.47636 1.08094 1.04244 1.73251 1.20830 0.87483 0.85918 0.74170 1.90617 1.15607 1.87648 1.50814 1.21459 0.95469 0.89393 0.96899 0.86943 1.58763 1.10885 1.09324 1.57252 1.22009 0.99195 0.99535 0.94572 1.19116 0.93901 0.92867 0.96223 1.22424 1.34598 1.14080 0.94737 0.93602 1.27257 0.94405 0.93039 1.08434 1.70924 1.45398 1.39882 1.01012 0.82979 0.76708 0.76705 0.70175 1.20936 1.19275 1.20012 1.22495 0.98586 0.83828 0.94943 0.88841 1.23371 1.03061 0.81011 0.95441 1.88448 1.91024 1.25606 1.25339 1.24168 1.02528 0.97380 0.81167 1.23820 0.96342 0.93466 0.85933 0.88004 1.86582 1.61221 1.67279 1.22568 0.91091 0.88046 0.89963 0.84313 0.83221 0.91185 0.94013 0.98463 0.97978 0.93194 0.89070 0.90587 0.85964 0.91068 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 8.47 127.77 1.08 2.25 16 2 N -0.60 -15.57 2.89 -815.56 -2.36 -17.93 16 3 C 0.53 17.91 6.93 87.65 0.61 18.52 16 4 O -0.57 -23.32 15.62 -3.02 -0.05 -23.37 16 5 C 0.08 2.80 2.47 44.17 0.11 2.91 16 6 H 0.11 3.47 6.31 -2.39 -0.02 3.45 16 7 N -0.83 -29.08 8.94 -171.80 -1.54 -30.62 16 8 C -0.11 -4.39 4.71 30.60 0.14 -4.25 16 9 C 0.02 0.77 4.05 29.85 0.12 0.89 16 10 C -0.62 -33.93 9.11 25.60 0.23 -33.70 16 11 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 12 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 13 N -0.93 -55.76 13.65 21.45 0.29 -55.47 16 14 Si 1.11 48.93 29.90 68.60 2.05 50.98 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 C 0.11 2.53 3.16 46.25 0.15 2.68 16 19 H 0.09 2.84 7.00 -2.39 -0.02 2.83 16 20 C 0.05 1.01 7.43 72.45 0.54 1.55 16 21 O -0.39 -7.72 11.36 -148.98 -1.69 -9.41 16 22 C 0.02 0.35 7.52 72.65 0.55 0.90 16 23 C 0.06 1.09 4.01 32.05 0.13 1.22 16 24 H 0.10 1.31 6.07 -2.39 -0.01 1.30 16 25 O -0.57 -10.54 13.48 -148.98 -2.01 -12.55 16 26 H 0.07 1.35 7.40 -2.38 -0.02 1.33 16 27 H 0.10 1.32 6.05 -2.39 -0.01 1.31 16 28 H 0.08 1.64 5.94 -2.39 -0.01 1.63 16 29 H 0.34 12.42 8.58 -89.70 -0.77 11.65 16 30 H 0.35 12.17 7.55 -89.69 -0.68 11.49 16 31 H 0.07 2.55 6.94 -2.39 -0.02 2.53 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.00 -0.14 6.74 -2.39 -0.02 -0.16 16 34 H 0.00 0.10 8.01 -2.39 -0.02 0.08 16 35 H 0.26 15.39 7.22 -92.71 -0.67 14.72 16 36 H 0.09 1.74 6.96 -2.38 -0.02 1.72 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.40 3.00 9.12 -74.06 -0.68 2.33 16 Total: -1.00 -73.26 320.68 -2.11 -75.38 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.93 Total: 31.40 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 4.12 Total: -8.42 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -3.60 Total: -104.01 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -3.75 Total: -45.33 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -73.26 -2.11 -75.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709200019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.679 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds