Wall clock time and date at job start Mon Mar 30 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00373 * 2 1 4 4 H 1.48498 * 109.47128 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.46608 * 29.99821 * 3 2 1 6 6 H 1.48496 * 109.47296 * 149.99601 * 3 2 1 7 7 C 1.37884 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99510 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46697 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46858 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47214 * 54.99818 * 11 10 9 13 13 N 1.46905 * 109.46865 * 294.99488 * 11 10 9 14 14 C 1.50705 * 109.46911 * 175.00308 * 11 10 9 15 15 O 1.21276 * 120.00374 * 100.00321 * 14 11 10 16 16 N 1.34778 * 119.99371 * 279.99338 * 14 11 10 17 17 C 1.47019 * 125.65277 * 359.97438 * 16 14 11 18 18 C 1.54321 * 107.27531 * 178.97403 * 17 16 14 19 19 C 1.55157 * 103.10033 * 337.71659 * 18 17 16 20 20 O 1.42895 * 111.00488 * 277.51704 * 19 18 17 21 21 C 1.53000 * 111.00230 * 153.66249 * 19 18 17 22 22 O 1.42898 * 109.47389 * 61.45887 * 21 19 18 23 23 C 1.47431 * 125.64579 * 180.02562 * 16 14 11 24 24 H 0.97002 * 119.99931 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47328 * 59.99999 * 9 7 2 26 26 H 1.09004 * 109.47146 * 299.99272 * 9 7 2 27 27 H 1.09001 * 109.47412 * 60.00283 * 10 9 7 28 28 H 1.09001 * 109.47275 * 299.99566 * 10 9 7 29 29 H 1.00893 * 111.00288 * 299.99980 * 13 11 10 30 30 H 1.00898 * 110.99933 * 63.95983 * 13 11 10 31 31 H 1.09001 * 109.88251 * 59.55144 * 17 16 14 32 32 H 1.09003 * 110.01193 * 298.46519 * 17 16 14 33 33 H 1.09002 * 110.72109 * 96.17040 * 18 17 16 34 34 H 1.09003 * 110.72356 * 219.26865 * 18 17 16 35 35 H 0.96703 * 114.00465 * 298.54028 * 20 19 18 36 36 H 1.09001 * 109.46781 * 181.45255 * 21 19 18 37 37 H 1.09000 * 109.47303 * 301.45183 * 21 19 18 38 38 H 0.96697 * 114.00738 * 179.97438 * 22 21 19 39 39 H 1.08999 * 110.36190 * 322.93058 * 23 16 14 40 40 H 1.08998 * 110.36491 * 85.14737 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0009 12 1 5.9148 -2.0473 0.8427 13 7 6.0410 -2.0513 -1.2544 14 6 6.0537 -4.0521 0.1246 15 8 6.4278 -4.6512 -0.8613 16 7 6.0873 -4.6522 1.3310 17 6 5.6667 -4.0449 2.6021 18 6 5.8587 -5.1085 3.7037 19 6 5.8410 -6.4425 2.9116 20 8 4.5013 -6.8695 2.6573 21 6 6.6299 -7.5275 3.6472 22 8 6.0278 -7.7746 4.9194 23 6 6.5531 -6.0259 1.5946 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1503 -0.8893 28 1 3.6577 -3.1506 0.8908 29 1 5.7175 -2.5802 -2.0503 30 1 5.7717 -1.0819 -1.3306 31 1 4.6174 -3.7553 2.5452 32 1 6.2810 -3.1711 2.8194 33 1 6.8150 -4.9724 4.2087 34 1 5.0377 -5.0744 4.4200 35 1 3.9853 -7.0430 3.4566 36 1 6.6230 -8.4444 3.0578 37 1 7.6582 -7.1953 3.7903 38 1 6.4765 -8.4533 5.4418 39 1 6.2607 -6.6884 0.7799 40 1 7.6351 -6.0411 1.7254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709423257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:29 Heat of formation + Delta-G solvation = -136.682989 kcal Electronic energy + Delta-G solvation = -21785.394294 eV Core-core repulsion = 18406.881633 eV Total energy + Delta-G solvation = -3378.512661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38856 -38.71641 -36.63623 -35.58406 -35.26363 -32.78479 -31.28883 -30.29700 -29.66417 -27.36284 -25.66676 -23.78322 -22.69365 -20.76087 -20.30828 -19.16258 -17.79566 -17.55508 -17.17809 -16.68767 -15.71036 -15.51739 -15.37506 -14.64260 -14.54959 -14.22334 -13.91407 -13.72769 -13.67913 -13.20198 -12.88895 -12.66065 -12.48886 -12.41975 -12.13155 -11.85874 -11.57098 -11.26723 -11.13761 -10.95379 -10.51344 -10.32593 -10.13734 -10.06882 -9.84797 -9.39516 -9.29085 -8.61952 -8.59370 -8.29628 -6.09597 -4.08929 2.85383 2.93856 3.26281 3.34285 3.35703 3.61254 3.81197 4.27683 4.33429 4.39269 4.63127 4.86042 4.89217 4.96877 5.07428 5.11352 5.23261 5.31583 5.43690 5.52678 5.53999 5.64215 5.64773 5.68000 5.89650 6.19352 6.25784 6.39400 6.69008 7.10297 7.12162 7.23883 7.34553 7.47632 7.60814 7.68972 7.79872 8.37236 8.47413 8.95028 9.51613 11.03697 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.004452 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.459071 B = 6288.464550 C = 6961.332440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.129 4.129 11 C 0.077 3.923 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.545 3.455 15 O -0.536 6.536 16 N -0.616 5.616 17 C 0.098 3.902 18 C -0.149 4.149 19 C 0.120 3.880 20 O -0.540 6.540 21 C 0.060 3.940 22 O -0.571 6.571 23 C 0.124 3.876 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.011 0.989 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.348 0.652 30 H 0.350 0.650 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.385 0.615 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.384 0.616 39 H 0.088 0.912 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.411 -12.724 10.695 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.169 4.169 11 C -0.038 4.038 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.334 3.666 15 O -0.412 6.412 16 N -0.352 5.352 17 C -0.025 4.025 18 C -0.187 4.187 19 C 0.078 3.922 20 O -0.347 6.347 21 C -0.019 4.019 22 O -0.377 6.377 23 C 0.001 3.999 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.233 0.767 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.232 0.768 39 H 0.106 0.894 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.968 -12.490 9.511 22.393 hybrid contribution -0.526 0.559 0.698 1.037 sum 15.443 -11.931 10.209 22.024 Atomic orbital electron populations 1.69912 1.06334 1.26966 1.50736 1.25038 0.94742 0.99176 0.94448 0.86776 0.80315 0.83584 0.78580 1.20217 1.21331 1.18987 1.21071 0.89211 0.94551 1.51233 0.91045 1.19567 0.97573 0.91297 0.96234 1.22198 0.91141 1.01058 1.02492 1.21471 0.95769 0.91247 0.95338 0.88646 1.58739 1.66763 1.07416 1.03406 1.20493 0.76693 0.88607 0.80814 1.90642 1.48087 1.66297 1.36159 1.48292 1.65432 1.14136 1.07306 1.22125 1.01609 0.96179 0.82600 1.23237 1.03925 0.94021 0.97483 1.22335 0.84065 0.91813 0.94033 1.86556 1.22667 1.89037 1.36406 1.22668 0.95949 0.98397 0.84851 1.86400 1.58189 1.62985 1.30081 1.22035 0.97319 0.84667 0.95907 0.92651 0.96397 0.97075 0.92072 0.91742 0.83818 0.83472 0.90053 0.91007 0.89835 0.89061 0.76671 0.92361 0.92325 0.76838 0.89373 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.58 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.21 3.81 -27.89 -0.11 -0.32 16 10 C -0.13 -2.56 4.77 -26.73 -0.13 -2.69 16 11 C 0.08 1.32 2.62 -68.86 -0.18 1.13 16 12 H 0.10 1.51 7.52 -51.93 -0.39 1.12 16 13 N -0.83 -14.03 8.94 -5.65 -0.05 -14.08 16 14 C 0.54 9.57 7.10 -10.98 -0.08 9.49 16 15 O -0.54 -10.95 16.51 5.56 0.09 -10.86 16 16 N -0.62 -8.86 3.33 -170.20 -0.57 -9.42 16 17 C 0.10 1.17 6.18 -3.07 -0.02 1.15 16 18 C -0.15 -1.38 5.89 -24.90 -0.15 -1.52 16 19 C 0.12 1.19 1.09 -88.20 -0.10 1.10 16 20 O -0.54 -6.49 13.18 -39.97 -0.53 -7.02 16 21 C 0.06 0.42 6.27 37.16 0.23 0.65 16 22 O -0.57 -3.78 13.12 -39.97 -0.52 -4.31 16 23 C 0.12 1.49 6.14 -2.26 -0.01 1.48 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 26 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.27 6.61 -51.93 -0.34 0.93 16 29 H 0.35 6.00 8.58 -39.30 -0.34 5.67 16 30 H 0.35 5.63 7.55 -39.29 -0.30 5.34 16 31 H 0.08 1.09 6.69 -51.93 -0.35 0.74 16 32 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 33 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.38 3.51 8.83 45.56 0.40 3.92 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 38 H 0.38 0.89 9.12 45.56 0.42 1.30 16 39 H 0.09 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -35.25 325.52 -6.07 -41.31 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -4.54 Total: 12.47 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.96 Total: -2.73 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.16 Total: -50.34 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.96 Total: -22.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.25 -6.07 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709423257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.370 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds