Wall clock time and date at job start Mon Mar 30 2020 04:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00373 * 2 1 4 4 H 1.48498 * 109.47128 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.46608 * 29.99821 * 3 2 1 6 6 H 1.48496 * 109.47296 * 149.99601 * 3 2 1 7 7 C 1.37884 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99510 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46697 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46858 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47214 * 54.99818 * 11 10 9 13 13 N 1.46905 * 109.46865 * 294.99488 * 11 10 9 14 14 C 1.50705 * 109.46911 * 175.00308 * 11 10 9 15 15 O 1.21276 * 120.00374 * 100.00321 * 14 11 10 16 16 N 1.34778 * 119.99371 * 279.99338 * 14 11 10 17 17 C 1.47019 * 125.65277 * 359.97438 * 16 14 11 18 18 C 1.54321 * 107.27531 * 178.97403 * 17 16 14 19 19 C 1.55157 * 103.10033 * 337.71659 * 18 17 16 20 20 O 1.42895 * 111.00488 * 277.51704 * 19 18 17 21 21 C 1.53000 * 111.00230 * 153.66249 * 19 18 17 22 22 O 1.42898 * 109.47389 * 61.45887 * 21 19 18 23 23 C 1.47431 * 125.64579 * 180.02562 * 16 14 11 24 24 H 0.97002 * 119.99931 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47328 * 59.99999 * 9 7 2 26 26 H 1.09004 * 109.47146 * 299.99272 * 9 7 2 27 27 H 1.09001 * 109.47412 * 60.00283 * 10 9 7 28 28 H 1.09001 * 109.47275 * 299.99566 * 10 9 7 29 29 H 1.00893 * 111.00288 * 299.99980 * 13 11 10 30 30 H 1.00898 * 110.99933 * 63.95983 * 13 11 10 31 31 H 1.09001 * 109.88251 * 59.55144 * 17 16 14 32 32 H 1.09003 * 110.01193 * 298.46519 * 17 16 14 33 33 H 1.09002 * 110.72109 * 96.17040 * 18 17 16 34 34 H 1.09003 * 110.72356 * 219.26865 * 18 17 16 35 35 H 0.96703 * 114.00465 * 298.54028 * 20 19 18 36 36 H 1.09001 * 109.46781 * 181.45255 * 21 19 18 37 37 H 1.09000 * 109.47303 * 301.45183 * 21 19 18 38 38 H 0.96697 * 114.00738 * 179.97438 * 22 21 19 39 39 H 1.08999 * 110.36190 * 322.93058 * 23 16 14 40 40 H 1.08998 * 110.36491 * 85.14737 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0009 12 1 5.9148 -2.0473 0.8427 13 7 6.0410 -2.0513 -1.2544 14 6 6.0537 -4.0521 0.1246 15 8 6.4278 -4.6512 -0.8613 16 7 6.0873 -4.6522 1.3310 17 6 5.6667 -4.0449 2.6021 18 6 5.8587 -5.1085 3.7037 19 6 5.8410 -6.4425 2.9116 20 8 4.5013 -6.8695 2.6573 21 6 6.6299 -7.5275 3.6472 22 8 6.0278 -7.7746 4.9194 23 6 6.5531 -6.0259 1.5946 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1503 -0.8893 28 1 3.6577 -3.1506 0.8908 29 1 5.7175 -2.5802 -2.0503 30 1 5.7717 -1.0819 -1.3306 31 1 4.6174 -3.7553 2.5452 32 1 6.2810 -3.1711 2.8194 33 1 6.8150 -4.9724 4.2087 34 1 5.0377 -5.0744 4.4200 35 1 3.9853 -7.0430 3.4566 36 1 6.6230 -8.4444 3.0578 37 1 7.6582 -7.1953 3.7903 38 1 6.4765 -8.4533 5.4418 39 1 6.2607 -6.6884 0.7799 40 1 7.6351 -6.0411 1.7254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709423257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:28 Heat of formation + Delta-G solvation = -169.468125 kcal Electronic energy + Delta-G solvation = -21786.815964 eV Core-core repulsion = 18406.881633 eV Total energy + Delta-G solvation = -3379.934332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48104 -39.76375 -37.34368 -37.12334 -36.19885 -34.83251 -32.24053 -32.11819 -30.53489 -28.71899 -26.93405 -25.08498 -23.90039 -22.07744 -21.55430 -20.38455 -19.12251 -18.49596 -18.29236 -18.05414 -16.86966 -16.70490 -16.23792 -16.18072 -15.82425 -15.52694 -15.24264 -15.01598 -14.66670 -14.63300 -14.19431 -14.06402 -13.72453 -13.56615 -13.21688 -13.08693 -12.91570 -12.67837 -12.35469 -12.09131 -11.97170 -11.88234 -11.67061 -11.43673 -11.00420 -10.90865 -10.82039 -10.77555 -9.79644 -9.66090 -8.30559 -6.36735 1.38216 1.39700 1.50550 1.51744 1.82672 2.35892 2.87916 3.04735 3.18427 3.42781 3.51761 3.66433 3.72888 4.01198 4.10718 4.12572 4.22732 4.23464 4.46266 4.50165 4.55130 4.63758 4.69231 4.73987 4.81466 4.90546 4.90922 5.11010 5.24298 5.33533 5.43103 5.60683 5.99853 6.23938 6.38017 6.45782 6.71243 6.73913 6.88724 7.06245 7.28004 8.86487 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022732 B = 0.004452 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.459071 B = 6288.464550 C = 6961.332440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.537 4.537 8 H 0.022 0.978 9 C -0.002 4.002 10 C -0.117 4.117 11 C 0.087 3.913 12 H 0.118 0.882 13 N -0.828 5.828 14 C 0.537 3.463 15 O -0.574 6.574 16 N -0.614 5.614 17 C 0.089 3.911 18 C -0.137 4.137 19 C 0.117 3.883 20 O -0.569 6.569 21 C 0.069 3.931 22 O -0.584 6.584 23 C 0.115 3.885 24 H 0.267 0.733 25 H 0.033 0.967 26 H 0.025 0.975 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.345 0.655 30 H 0.356 0.644 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.394 0.606 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.404 0.596 39 H 0.062 0.938 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.216 -11.847 12.450 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.159 1.159 7 C -0.575 4.575 8 H 0.041 0.959 9 C -0.040 4.040 10 C -0.157 4.157 11 C -0.028 4.028 12 H 0.136 0.864 13 N -0.360 5.360 14 C 0.326 3.674 15 O -0.453 6.453 16 N -0.348 5.348 17 C -0.033 4.033 18 C -0.175 4.175 19 C 0.076 3.924 20 O -0.377 6.377 21 C -0.009 4.009 22 O -0.393 6.393 23 C -0.007 4.007 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.245 0.755 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.793 -11.649 11.325 24.842 hybrid contribution -1.495 0.160 0.189 1.515 sum 17.299 -11.489 11.513 23.745 Atomic orbital electron populations 1.70084 1.08595 1.28308 1.52323 1.26092 0.95633 1.03808 0.93795 0.85588 0.79774 0.77548 0.79307 1.19220 1.21199 1.15878 1.21407 0.92135 0.92877 1.51047 0.95914 1.19474 0.93876 0.93328 0.97295 1.21998 0.93533 0.98989 1.01150 1.21367 0.93245 0.91873 0.96293 0.86447 1.58757 1.66414 1.07709 1.03157 1.20523 0.76784 0.88711 0.81381 1.90619 1.50089 1.67022 1.37579 1.48357 1.64044 1.15133 1.07228 1.22348 1.00761 0.97900 0.82298 1.23229 1.05526 0.92307 0.96472 1.22438 0.83398 0.93369 0.93226 1.86517 1.24136 1.89344 1.37744 1.22507 0.96262 0.97317 0.84863 1.86346 1.58970 1.64019 1.29955 1.22289 0.99183 0.82936 0.96318 0.92449 0.94843 0.95686 0.94401 0.92325 0.84196 0.82819 0.92074 0.88954 0.87176 0.88622 0.75536 0.92323 0.89881 0.74545 0.91922 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.96 42.85 27.47 68.60 1.88 44.73 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.41 6.54 99.48 0.65 -8.75 16 7 C -0.54 -30.88 9.66 25.60 0.25 -30.63 16 8 H 0.02 1.47 7.99 -2.91 -0.02 1.45 16 9 C 0.00 -0.10 3.81 29.85 0.11 0.01 16 10 C -0.12 -4.65 4.77 30.60 0.15 -4.50 16 11 C 0.09 2.88 2.62 44.17 0.12 3.00 16 12 H 0.12 3.37 7.52 -2.39 -0.02 3.35 16 13 N -0.83 -26.75 8.94 -171.78 -1.53 -28.29 16 14 C 0.54 18.61 7.10 87.66 0.62 19.23 16 15 O -0.57 -23.63 16.51 -3.02 -0.05 -23.68 16 16 N -0.61 -17.02 3.33 -810.80 -2.70 -19.72 16 17 C 0.09 1.95 6.18 86.73 0.54 2.49 16 18 C -0.14 -2.18 5.89 31.78 0.19 -1.99 16 19 C 0.12 2.13 1.09 -9.23 -0.01 2.12 16 20 O -0.57 -13.50 13.18 -144.45 -1.90 -15.41 16 21 C 0.07 0.77 6.27 71.98 0.45 1.22 16 22 O -0.58 -6.05 13.12 -144.45 -1.89 -7.95 16 23 C 0.12 2.64 6.14 87.03 0.53 3.17 16 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 26 H 0.02 1.06 6.29 -2.39 -0.02 1.04 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 2.37 6.61 -2.39 -0.02 2.35 16 29 H 0.34 11.74 8.58 -89.70 -0.77 10.97 16 30 H 0.36 10.61 7.55 -89.70 -0.68 9.93 16 31 H 0.06 1.60 6.69 -2.39 -0.02 1.58 16 32 H 0.09 1.66 7.94 -2.39 -0.02 1.64 16 33 H 0.11 1.20 8.04 -2.39 -0.02 1.18 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.39 7.06 8.83 -74.06 -0.65 6.40 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.55 8.11 -2.39 -0.02 0.53 16 38 H 0.40 0.63 9.12 -74.06 -0.68 -0.05 16 39 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 40 H 0.11 1.87 8.02 -2.39 -0.02 1.85 16 Total: -1.00 -78.61 325.52 -4.23 -82.85 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -1.74 Total: 32.30 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 3.41 Total: -5.21 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -3.93 Total: -107.63 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -3.85 Total: -47.03 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -78.61 -4.23 -82.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709423257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.622 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds