Wall clock time and date at job start Mon Mar 30 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46737 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47047 * 55.00850 * 11 10 9 13 13 N 1.46898 * 109.47739 * 295.00456 * 11 10 9 14 14 C 1.50703 * 109.46784 * 175.00007 * 11 10 9 15 15 O 1.21281 * 120.00070 * 100.00653 * 14 11 10 16 16 N 1.34771 * 120.00115 * 279.99960 * 14 11 10 17 17 C 1.47026 * 125.65155 * 0.03321 * 16 14 11 18 18 C 1.54326 * 107.27327 * 181.01834 * 17 16 14 19 19 C 1.55163 * 102.94100 * 22.19007 * 18 17 16 20 20 O 1.42897 * 111.00384 * 82.57418 * 19 18 17 21 21 C 1.53002 * 111.00024 * 206.38367 * 19 18 17 22 22 O 1.42895 * 109.47353 * 303.54919 * 21 19 18 23 23 C 1.47425 * 125.65089 * 179.71531 * 16 14 11 24 24 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 26 26 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 27 27 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 28 28 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 29 29 H 1.00900 * 110.99893 * 176.05074 * 13 11 10 30 30 H 1.00900 * 110.99763 * 300.00017 * 13 11 10 31 31 H 1.09007 * 109.87431 * 300.43513 * 17 16 14 32 32 H 1.08995 * 109.88171 * 61.44272 * 17 16 14 33 33 H 1.09002 * 110.71884 * 140.55097 * 18 17 16 34 34 H 1.08995 * 110.71728 * 263.82923 * 18 17 16 35 35 H 0.96705 * 114.00342 * 61.45079 * 20 19 18 36 36 H 1.08997 * 109.46600 * 63.54812 * 21 19 18 37 37 H 1.08999 * 109.46831 * 183.54375 * 21 19 18 38 38 H 0.96696 * 113.99765 * 180.02562 * 22 21 19 39 39 H 1.08996 * 110.36887 * 274.75664 * 23 16 14 40 40 H 1.09005 * 110.36384 * 37.07516 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5516 -2.6363 0.0113 12 1 5.9156 -2.0423 0.8497 13 7 6.0404 -2.0578 -1.2474 14 6 6.0541 -4.0510 0.1425 15 8 6.4276 -4.6555 -0.8403 16 7 6.0887 -4.6444 1.3521 17 6 5.6677 -4.0306 2.6201 18 6 5.9099 -5.0699 3.7349 19 6 6.9803 -6.0046 3.1120 20 8 8.2909 -5.4559 3.2650 21 6 6.9023 -7.4076 3.7174 22 8 7.0426 -7.3224 5.1369 23 6 6.5486 -6.0188 1.6221 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6844 -0.8877 26 1 3.8753 -0.6757 0.8924 27 1 3.6588 -3.1454 0.9053 28 1 3.6581 -3.1550 -0.8746 29 1 7.0469 -1.9873 -1.2461 30 1 5.7163 -2.5911 -2.0403 31 1 6.2591 -3.1355 2.8128 32 1 4.6097 -3.7728 2.5738 33 1 6.2945 -4.5884 4.6340 34 1 4.9956 -5.6219 3.9527 35 1 8.5628 -5.3376 4.1854 36 1 5.9388 -7.8553 3.4738 37 1 7.7031 -8.0243 3.3094 38 1 7.0032 -8.1768 5.5880 39 1 5.7359 -6.7282 1.4669 40 1 7.3970 -6.2671 0.9842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709423265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:36 Heat of formation + Delta-G solvation = -170.093133 kcal Electronic energy + Delta-G solvation = -21706.462519 eV Core-core repulsion = 18326.501085 eV Total energy + Delta-G solvation = -3379.961434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55867 -39.84149 -37.33177 -36.89076 -36.23387 -34.79787 -32.33698 -32.21858 -30.57226 -28.67473 -26.94422 -24.95668 -23.86019 -22.03023 -21.53286 -20.44285 -18.95064 -18.48872 -18.27016 -18.08104 -17.04037 -16.82934 -16.50554 -16.18637 -15.95868 -15.66080 -15.16909 -14.75657 -14.72389 -14.45324 -14.17079 -13.92382 -13.88026 -13.47694 -13.18738 -13.04883 -12.77459 -12.55842 -12.35497 -12.02893 -11.97289 -11.74609 -11.59828 -11.32066 -11.17007 -11.01455 -10.90642 -10.70552 -9.78219 -9.74266 -8.24670 -6.27964 1.40112 1.41506 1.43966 1.57876 1.83578 2.42097 2.84129 3.11909 3.17305 3.39300 3.46854 3.57915 3.73744 3.98787 4.08139 4.20050 4.20855 4.21886 4.41406 4.50760 4.59466 4.68000 4.71148 4.77198 4.82799 4.90992 5.07747 5.11792 5.21347 5.47708 5.64145 5.72971 6.00610 6.31703 6.33638 6.44657 6.73375 6.80019 6.84920 6.95727 7.36710 8.92128 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.004194 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.260678 B = 6674.681735 C = 7210.092777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.005 3.995 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.246 1.246 6 H -0.288 1.288 7 C -0.531 4.531 8 H 0.029 0.971 9 C 0.004 3.996 10 C -0.077 4.077 11 C 0.090 3.910 12 H 0.113 0.887 13 N -0.817 5.817 14 C 0.499 3.501 15 O -0.585 6.585 16 N -0.610 5.610 17 C 0.089 3.911 18 C -0.137 4.137 19 C 0.124 3.876 20 O -0.563 6.563 21 C 0.066 3.934 22 O -0.582 6.582 23 C 0.111 3.889 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.348 0.652 30 H 0.347 0.653 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.396 0.604 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.403 0.597 39 H 0.096 0.904 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.502 -14.122 12.150 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.170 1.170 6 H -0.214 1.214 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.033 4.033 10 C -0.115 4.115 11 C -0.026 4.026 12 H 0.131 0.869 13 N -0.345 5.345 14 C 0.287 3.713 15 O -0.465 6.465 16 N -0.343 5.343 17 C -0.033 4.033 18 C -0.175 4.175 19 C 0.083 3.917 20 O -0.371 6.371 21 C -0.012 4.012 22 O -0.391 6.391 23 C -0.012 4.012 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.114 0.886 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.166 -13.008 10.985 24.178 hybrid contribution 0.164 -0.898 0.309 0.964 sum 17.330 -13.906 11.294 24.925 Atomic orbital electron populations 1.70074 1.08338 1.28054 1.53049 1.25972 0.95532 1.03463 0.94161 0.85659 0.79564 0.78161 0.79299 1.18815 1.16986 1.21449 1.21527 0.92326 0.92926 1.50092 0.95258 1.19358 0.93032 0.93666 0.97288 1.21245 0.90391 0.98932 1.00964 1.21620 0.96953 0.88359 0.95677 0.86879 1.59054 1.16513 1.55820 1.03154 1.22206 0.77120 0.90524 0.81459 1.90636 1.51053 1.66998 1.37860 1.48542 1.63221 1.15098 1.07431 1.22363 1.00943 0.97740 0.82284 1.23206 1.00194 0.96601 0.97526 1.22233 0.83598 0.92711 0.93189 1.86485 1.31289 1.85701 1.33670 1.22526 1.01908 0.94819 0.81987 1.86344 1.96705 1.37711 1.18308 1.22256 0.99779 0.84524 0.94627 0.92622 0.95290 0.96017 0.91617 0.94067 0.83871 0.83969 0.90307 0.90533 0.87765 0.88484 0.75312 0.90813 0.91951 0.74579 0.88576 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.95 44.89 27.46 68.60 1.88 46.77 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.25 -11.04 6.55 99.48 0.65 -10.39 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C 0.00 0.19 3.93 29.85 0.12 0.31 16 10 C -0.08 -3.03 4.77 30.59 0.15 -2.88 16 11 C 0.09 2.91 2.56 44.17 0.11 3.03 16 12 H 0.11 3.32 7.46 -2.39 -0.02 3.30 16 13 N -0.82 -26.22 8.44 -171.80 -1.45 -27.67 16 14 C 0.50 16.31 7.09 87.66 0.62 16.93 16 15 O -0.58 -22.48 16.50 -3.03 -0.05 -22.53 16 16 N -0.61 -16.22 3.32 -811.35 -2.70 -18.92 16 17 C 0.09 1.90 6.19 86.73 0.54 2.44 16 18 C -0.14 -2.14 5.78 31.79 0.18 -1.95 16 19 C 0.12 2.04 1.08 -9.32 -0.01 2.03 16 20 O -0.56 -10.45 13.19 -148.40 -1.96 -12.41 16 21 C 0.07 0.71 6.34 71.98 0.46 1.17 16 22 O -0.58 -5.46 13.14 -148.40 -1.95 -7.42 16 23 C 0.11 2.46 6.12 86.93 0.53 2.99 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.03 1.39 6.82 -2.39 -0.02 1.37 16 26 H 0.02 0.96 7.56 -2.39 -0.02 0.94 16 27 H 0.07 2.47 6.65 -2.39 -0.02 2.46 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.35 9.64 9.06 -89.69 -0.81 8.83 16 30 H 0.35 11.56 8.58 -89.69 -0.77 10.79 16 31 H 0.08 1.60 7.85 -2.38 -0.02 1.58 16 32 H 0.08 1.75 6.75 -2.39 -0.02 1.74 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.35 8.04 -2.39 -0.02 1.33 16 35 H 0.40 4.80 8.99 -74.05 -0.67 4.14 16 36 H 0.07 0.61 8.00 -2.39 -0.02 0.59 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.40 0.42 9.12 -74.06 -0.68 -0.25 16 39 H 0.10 1.85 7.94 -2.39 -0.02 1.83 16 40 H 0.07 1.79 8.03 -2.38 -0.02 1.77 16 Total: -1.00 -77.00 327.36 -4.40 -81.41 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -1.89 Total: 26.67 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 3.41 Total: -5.76 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.85 Total: -106.74 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -3.96 Total: -42.36 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -77.00 -4.40 -81.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709423265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.685 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds