Wall clock time and date at job start Mon Mar 30 2020 04:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48507 * 109.47229 * 240.00487 * 3 2 1 5 5 H 1.48501 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47296 * 120.00046 * 3 2 1 7 7 C 1.38949 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00110 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00081 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00139 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47475 * 178.00044 * 12 10 9 14 14 C 1.46844 * 110.99525 * 298.43783 * 13 12 10 15 15 C 1.53040 * 109.52411 * 185.79836 * 14 13 12 16 16 C 1.53117 * 109.31095 * 300.87975 * 15 14 13 17 17 C 1.53122 * 109.15904 * 57.63074 * 16 15 14 18 18 H 1.09000 * 109.49892 * 62.28864 * 17 16 15 19 19 C 1.53005 * 109.50251 * 182.40539 * 17 16 15 20 20 O 1.42903 * 109.46985 * 295.00197 * 19 17 16 21 21 C 1.46847 * 110.99959 * 62.68377 * 13 12 10 22 22 H 1.08999 * 109.46439 * 294.18194 * 21 13 12 23 23 C 1.53000 * 109.45296 * 54.14942 * 21 13 12 24 24 O 1.42902 * 109.47555 * 292.15653 * 23 21 13 25 25 H 0.96999 * 120.00138 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99679 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46697 * 57.99875 * 12 10 9 28 28 H 1.08995 * 109.47226 * 298.00564 * 12 10 9 29 29 H 1.09008 * 109.43519 * 65.80018 * 14 13 12 30 30 H 1.09003 * 109.49759 * 305.83700 * 14 13 12 31 31 H 1.09005 * 109.50228 * 180.91980 * 15 14 13 32 32 H 1.09001 * 109.50174 * 60.84286 * 15 14 13 33 33 H 1.08995 * 109.52277 * 177.53852 * 16 15 14 34 34 H 1.09005 * 109.52314 * 297.66727 * 16 15 14 35 35 H 1.08996 * 109.46895 * 54.99815 * 19 17 16 36 36 H 1.08993 * 109.46769 * 175.00055 * 19 17 16 37 37 H 0.96690 * 113.99923 * 179.97438 * 20 19 17 38 38 H 1.09005 * 109.46705 * 52.15125 * 23 21 13 39 39 H 1.09000 * 109.47322 * 172.14968 * 23 21 13 40 40 H 0.96700 * 113.99811 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8630 0.0000 13 7 2.1977 -5.9791 -0.0484 14 6 2.9985 -5.9338 -1.2784 15 6 3.8756 -7.1850 -1.3640 16 6 4.7908 -7.2467 -0.1380 17 6 3.9327 -7.2444 1.1302 18 1 3.3002 -8.1320 1.1432 19 6 4.8410 -7.2454 2.3615 20 8 5.5798 -8.4678 2.4075 21 6 3.0547 -5.9911 1.1440 22 1 3.6880 -5.1040 1.1449 23 6 2.1807 -5.9947 2.3997 24 8 1.4978 -4.7441 2.5085 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3907 0.0002 27 1 0.5902 -4.9055 -0.8712 28 1 0.6447 -4.9362 0.9076 29 1 3.6317 -5.0466 -1.2665 30 1 2.3357 -5.8951 -2.1429 31 1 4.4819 -7.1432 -2.2690 32 1 3.2427 -8.0720 -1.3907 33 1 5.3861 -8.1590 -0.1734 34 1 5.4521 -6.3801 -0.1330 35 1 5.5326 -6.4049 2.3034 36 1 4.2330 -7.1542 3.2615 37 1 6.1781 -8.5375 3.1638 38 1 1.4515 -6.8021 2.3325 39 1 2.8079 -6.1438 3.2786 40 1 0.9241 -4.6754 3.2839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709872571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:21 Heat of formation + Delta-G solvation = -127.419154 kcal Electronic energy + Delta-G solvation = -22713.742666 eV Core-core repulsion = 19335.631714 eV Total energy + Delta-G solvation = -3378.110951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90477 -37.73402 -36.57152 -36.00131 -33.92172 -32.81117 -31.72771 -31.12668 -27.62318 -26.08855 -25.21529 -24.14507 -21.57804 -21.04470 -19.59365 -18.96441 -17.72309 -17.65817 -16.73881 -15.94272 -15.57441 -15.15431 -14.95718 -14.46078 -14.17410 -13.83990 -13.75990 -13.56055 -13.18228 -12.89820 -12.60414 -12.35357 -12.02560 -11.58158 -11.47722 -11.37888 -11.12128 -10.85874 -10.57612 -10.46805 -10.36233 -10.16378 -10.14542 -10.01372 -9.84596 -9.37789 -9.23173 -9.04656 -7.84189 -7.25432 -6.32971 -3.73018 3.23172 3.28148 3.32745 3.99609 4.08363 4.24462 4.47240 4.56524 4.87295 5.10835 5.17526 5.31988 5.35441 5.38908 5.47726 5.54432 5.58651 5.68709 5.74230 5.83083 5.97802 6.05986 6.13079 6.23206 6.27702 6.34254 6.46766 6.54044 6.60147 6.71006 6.89392 7.50764 7.55116 7.61727 7.62758 7.92637 8.15616 8.72407 9.27146 9.67434 10.19455 10.84268 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.005008 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.663478 B = 5589.654380 C = 5688.504697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.927 3.073 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.295 4.295 8 H 0.098 0.902 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.601 6.601 12 C 0.030 3.970 13 N -0.507 5.507 14 C 0.035 3.965 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.073 4.073 18 H 0.079 0.921 19 C 0.077 3.923 20 O -0.573 6.573 21 C 0.074 3.926 22 H 0.094 0.906 23 C 0.077 3.923 24 O -0.550 6.550 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.375 0.625 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 -13.975 4.642 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.425 4.425 8 H 0.116 0.884 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.488 6.488 12 C -0.101 4.101 13 N -0.230 5.230 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.092 4.092 18 H 0.097 0.903 19 C -0.001 4.001 20 O -0.378 6.378 21 C -0.034 4.034 22 H 0.112 0.888 23 C -0.001 4.001 24 O -0.355 6.355 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.098 -14.235 3.517 15.225 hybrid contribution 0.202 1.712 1.079 2.034 sum 4.301 -12.523 4.597 14.016 Atomic orbital electron populations 1.69609 1.05849 1.27987 1.51074 1.25215 0.95574 0.99525 0.97669 0.85979 0.78779 0.80872 0.78902 1.20076 1.21031 1.20099 1.19613 0.93168 0.82614 1.47114 0.88385 1.41935 1.09101 1.04775 1.63784 1.20887 0.88473 0.85802 0.82778 1.90349 1.14317 1.87061 1.57111 1.22411 0.95635 0.87865 1.04181 1.62412 1.17777 1.41114 1.01725 1.22321 0.96587 0.98572 0.91749 1.21560 0.97591 0.98517 0.97402 1.21493 0.97471 1.01751 0.93710 1.21036 0.95683 0.98542 0.93922 0.90301 1.22360 0.93959 0.85992 0.97815 1.86463 1.60019 1.39672 1.51617 1.21756 0.94181 0.98358 0.89142 0.88816 1.22323 0.94793 0.86095 0.96904 1.86831 1.63542 1.36462 1.48701 0.92002 0.77590 0.90656 0.86189 0.90763 0.91928 0.92057 0.91971 0.91687 0.92140 0.93399 0.93517 0.77858 0.93402 0.93742 0.78463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 13.05 55.50 0.72 -24.35 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.43 10.37 6.21 -10.99 -0.07 10.30 16 11 O -0.60 -15.89 11.19 5.54 0.06 -15.83 16 12 C 0.03 0.57 5.28 -4.98 -0.03 0.54 16 13 N -0.51 -8.87 4.69 -228.12 -1.07 -9.94 16 14 C 0.04 0.62 5.03 -3.83 -0.02 0.60 16 15 C -0.11 -1.63 6.09 -26.65 -0.16 -1.80 16 16 C -0.11 -1.54 5.15 -26.61 -0.14 -1.68 16 17 C -0.07 -1.04 2.11 -90.54 -0.19 -1.23 16 18 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.08 0.94 6.24 37.16 0.23 1.17 16 20 O -0.57 -6.50 13.25 -35.23 -0.47 -6.96 16 21 C 0.07 1.24 1.40 -67.73 -0.09 1.14 16 22 H 0.09 1.97 5.65 -51.93 -0.29 1.68 16 23 C 0.08 1.10 6.12 37.16 0.23 1.32 16 24 O -0.55 -8.82 9.37 -35.23 -0.33 -9.15 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.39 9.88 7.90 -40.82 -0.32 9.56 16 27 H 0.08 1.35 8.13 -51.93 -0.42 0.93 16 28 H 0.12 2.16 5.08 -51.93 -0.26 1.90 16 29 H 0.07 1.57 5.70 -51.92 -0.30 1.27 16 30 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.51 6.06 -51.93 -0.31 0.19 16 37 H 0.38 2.47 9.12 45.56 0.42 2.89 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.55 5.98 -51.93 -0.31 0.24 16 40 H 0.37 4.14 9.12 45.56 0.42 4.55 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -32.97 309.59 -6.25 -39.21 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -4.27 Total: 18.14 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.48 Total: 2.33 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.40 Total: -48.91 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.73 Total: -31.94 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.97 -6.25 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709872571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.205 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds