Wall clock time and date at job start Mon Mar 30 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48507 * 109.47229 * 240.00487 * 3 2 1 5 5 H 1.48501 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47296 * 120.00046 * 3 2 1 7 7 C 1.38949 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00110 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00081 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00139 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47475 * 178.00044 * 12 10 9 14 14 C 1.46844 * 110.99525 * 298.43783 * 13 12 10 15 15 C 1.53040 * 109.52411 * 185.79836 * 14 13 12 16 16 C 1.53117 * 109.31095 * 300.87975 * 15 14 13 17 17 C 1.53122 * 109.15904 * 57.63074 * 16 15 14 18 18 H 1.09000 * 109.49892 * 62.28864 * 17 16 15 19 19 C 1.53005 * 109.50251 * 182.40539 * 17 16 15 20 20 O 1.42903 * 109.46985 * 295.00197 * 19 17 16 21 21 C 1.46847 * 110.99959 * 62.68377 * 13 12 10 22 22 H 1.08999 * 109.46439 * 294.18194 * 21 13 12 23 23 C 1.53000 * 109.45296 * 54.14942 * 21 13 12 24 24 O 1.42902 * 109.47555 * 292.15653 * 23 21 13 25 25 H 0.96999 * 120.00138 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99679 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.46697 * 57.99875 * 12 10 9 28 28 H 1.08995 * 109.47226 * 298.00564 * 12 10 9 29 29 H 1.09008 * 109.43519 * 65.80018 * 14 13 12 30 30 H 1.09003 * 109.49759 * 305.83700 * 14 13 12 31 31 H 1.09005 * 109.50228 * 180.91980 * 15 14 13 32 32 H 1.09001 * 109.50174 * 60.84286 * 15 14 13 33 33 H 1.08995 * 109.52277 * 177.53852 * 16 15 14 34 34 H 1.09005 * 109.52314 * 297.66727 * 16 15 14 35 35 H 1.08996 * 109.46895 * 54.99815 * 19 17 16 36 36 H 1.08993 * 109.46769 * 175.00055 * 19 17 16 37 37 H 0.96690 * 113.99923 * 179.97438 * 20 19 17 38 38 H 1.09005 * 109.46705 * 52.15125 * 23 21 13 39 39 H 1.09000 * 109.47322 * 172.14968 * 23 21 13 40 40 H 0.96700 * 113.99811 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8630 0.0000 13 7 2.1977 -5.9791 -0.0484 14 6 2.9985 -5.9338 -1.2784 15 6 3.8756 -7.1850 -1.3640 16 6 4.7908 -7.2467 -0.1380 17 6 3.9327 -7.2444 1.1302 18 1 3.3002 -8.1320 1.1432 19 6 4.8410 -7.2454 2.3615 20 8 5.5798 -8.4678 2.4075 21 6 3.0547 -5.9911 1.1440 22 1 3.6880 -5.1040 1.1449 23 6 2.1807 -5.9947 2.3997 24 8 1.4978 -4.7441 2.5085 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3907 0.0002 27 1 0.5902 -4.9055 -0.8712 28 1 0.6447 -4.9362 0.9076 29 1 3.6317 -5.0466 -1.2665 30 1 2.3357 -5.8951 -2.1429 31 1 4.4819 -7.1432 -2.2690 32 1 3.2427 -8.0720 -1.3907 33 1 5.3861 -8.1590 -0.1734 34 1 5.4521 -6.3801 -0.1330 35 1 5.5326 -6.4049 2.3034 36 1 4.2330 -7.1542 3.2615 37 1 6.1781 -8.5375 3.1638 38 1 1.4515 -6.8021 2.3325 39 1 2.8079 -6.1438 3.2786 40 1 0.9241 -4.6754 3.2839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709872571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:20 Heat of formation + Delta-G solvation = -157.242743 kcal Electronic energy + Delta-G solvation = -22715.035914 eV Core-core repulsion = 19335.631714 eV Total energy + Delta-G solvation = -3379.404199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35409 -39.35131 -37.70164 -37.20439 -35.87555 -34.21710 -33.19067 -32.94735 -29.12790 -27.41217 -26.64078 -25.80935 -22.94633 -22.26447 -21.02750 -20.69704 -19.71617 -18.71381 -17.86749 -17.64654 -16.91940 -16.69760 -16.30238 -15.97778 -15.61400 -15.50960 -15.39094 -14.98633 -14.49499 -14.16923 -13.93928 -13.72161 -13.49271 -13.35500 -12.99389 -12.80615 -12.65806 -12.41616 -12.26577 -12.13792 -11.88814 -11.62362 -11.39257 -11.27048 -11.20836 -10.88452 -10.86164 -10.43228 -9.90989 -8.93546 -8.40802 -5.89707 1.38130 1.38743 1.49799 2.16701 2.30975 2.85662 3.26056 3.34599 3.42410 3.50119 3.77136 4.00577 4.06662 4.29425 4.30764 4.39348 4.46025 4.50331 4.55671 4.61204 4.65180 4.72049 4.81540 4.94073 4.98905 4.99773 5.15060 5.16438 5.31345 5.33091 5.42020 5.56381 5.97735 6.13444 6.18804 6.66745 6.91206 6.98178 7.18661 7.65652 8.22061 8.74918 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.005008 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.663478 B = 5589.654380 C = 5688.504697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.327 4.327 8 H 0.072 0.928 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.628 6.628 12 C 0.038 3.962 13 N -0.495 5.495 14 C 0.034 3.966 15 C -0.105 4.105 16 C -0.105 4.105 17 C -0.068 4.068 18 H 0.088 0.912 19 C 0.083 3.917 20 O -0.582 6.582 21 C 0.073 3.927 22 H 0.045 0.955 23 C 0.078 3.922 24 O -0.581 6.581 25 H 0.276 0.724 26 H 0.393 0.607 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -15.333 5.373 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.457 4.457 8 H 0.090 0.910 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.516 6.516 12 C -0.093 4.093 13 N -0.217 5.217 14 C -0.094 4.094 15 C -0.143 4.143 16 C -0.143 4.143 17 C -0.087 4.087 18 H 0.106 0.894 19 C 0.005 3.995 20 O -0.390 6.390 21 C -0.036 4.036 22 H 0.063 0.937 23 C 0.001 3.999 24 O -0.389 6.389 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.107 0.893 28 H 0.155 0.845 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.246 0.754 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.758 -15.619 4.274 16.624 hybrid contribution 0.358 2.062 0.866 2.265 sum 4.116 -13.557 5.140 15.072 Atomic orbital electron populations 1.69675 1.06724 1.29058 1.50901 1.25962 0.96494 1.02162 0.96691 0.85058 0.77798 0.77135 0.78713 1.19984 1.19368 1.19944 1.19539 0.92337 0.84422 1.49440 0.91016 1.42005 1.09058 1.04856 1.65070 1.21852 0.88365 0.86825 0.80544 1.90365 1.15980 1.87753 1.57540 1.22480 0.95743 0.85409 1.05624 1.62533 1.17716 1.39319 1.02164 1.22314 0.96469 0.98475 0.92125 1.21526 0.97393 0.97300 0.98073 1.21479 0.97369 1.01323 0.94093 1.20986 0.95692 0.97292 0.94759 0.89363 1.22189 0.93775 0.86053 0.97465 1.86399 1.60564 1.38820 1.53251 1.21763 0.94207 0.97647 0.89977 0.93667 1.22382 0.95230 0.86010 0.96299 1.86752 1.64261 1.37567 1.50337 0.91488 0.77412 0.89317 0.84507 0.95049 0.91469 0.90831 0.90288 0.90269 0.94399 0.94637 0.91747 0.75356 0.91227 0.91605 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 13.05 21.66 0.28 -50.91 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 3 Si 0.99 44.29 29.55 68.60 2.03 46.31 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 9 N -0.57 -30.63 5.29 -306.98 -1.62 -32.25 16 10 C 0.44 21.41 6.21 87.66 0.54 21.96 16 11 O -0.63 -34.77 11.19 -3.08 -0.03 -34.81 16 12 C 0.04 1.45 5.28 85.56 0.45 1.90 16 13 N -0.49 -16.94 4.69 -875.65 -4.11 -21.05 16 14 C 0.03 1.20 5.03 86.33 0.43 1.64 16 15 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 16 C -0.11 -2.94 5.15 30.67 0.16 -2.79 16 17 C -0.07 -1.84 2.11 -10.74 -0.02 -1.86 16 18 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 19 C 0.08 1.89 6.24 71.98 0.45 2.34 16 20 O -0.58 -11.70 13.25 -148.98 -1.97 -13.67 16 21 C 0.07 2.39 1.40 44.94 0.06 2.45 16 22 H 0.05 1.97 5.65 -2.39 -0.01 1.96 16 23 C 0.08 2.08 6.12 71.98 0.44 2.52 16 24 O -0.58 -18.01 9.37 -148.98 -1.40 -19.41 16 25 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.39 20.25 7.90 -92.71 -0.73 19.52 16 27 H 0.09 3.11 8.13 -2.39 -0.02 3.09 16 28 H 0.14 4.76 5.08 -2.39 -0.01 4.75 16 29 H 0.03 1.39 5.70 -2.38 -0.01 1.37 16 30 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.00 7.90 -2.39 -0.02 1.98 16 34 H 0.04 1.21 8.14 -2.38 -0.02 1.20 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.23 6.06 -2.39 -0.01 1.21 16 37 H 0.40 4.15 9.12 -74.06 -0.68 3.48 16 38 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.46 5.98 -2.39 -0.01 1.45 16 40 H 0.39 8.13 9.12 -74.05 -0.68 7.46 16 Total: -1.00 -72.54 309.59 -3.83 -76.37 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -1.00 Total: 42.68 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 3.99 Total: 6.74 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -5.45 Total: -104.22 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: -3.40 Total: -67.89 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.54 -3.83 -76.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709872571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.870 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds