Wall clock time and date at job start Mon Mar 30 2020 04:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48497 * 109.46792 * 269.99918 * 3 2 1 5 5 H 1.48500 * 109.46935 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47088 * 149.99676 * 3 2 1 7 7 C 1.37875 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00178 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46910 * 55.00336 * 11 10 9 13 13 N 1.46901 * 109.46934 * 295.00085 * 11 10 9 14 14 C 1.50696 * 109.46750 * 175.00082 * 11 10 9 15 15 O 1.21278 * 120.00013 * 100.00390 * 14 11 10 16 16 N 1.34776 * 119.99865 * 279.99809 * 14 11 10 17 17 C 1.46500 * 119.99690 * 180.02562 * 16 14 11 18 18 H 1.09003 * 109.57870 * 34.84591 * 17 16 14 19 19 C 1.53281 * 109.64249 * 274.63525 * 17 16 14 20 20 O 1.42898 * 109.46421 * 182.53057 * 19 17 16 21 21 C 1.42910 * 114.09936 * 61.15847 * 20 19 17 22 22 C 1.53092 * 109.41241 * 298.84239 * 21 20 19 23 23 C 1.53180 * 109.16382 * 57.60761 * 22 21 20 24 24 H 1.09000 * 109.54416 * 183.06057 * 23 22 21 25 25 O 1.42905 * 109.54169 * 62.88302 * 23 22 21 26 26 H 0.96988 * 120.00530 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47257 * 59.99393 * 9 7 2 28 28 H 1.08999 * 109.46268 * 299.99582 * 9 7 2 29 29 H 1.09007 * 109.46999 * 59.99668 * 10 9 7 30 30 H 1.08994 * 109.47277 * 299.99565 * 10 9 7 31 31 H 1.00900 * 110.99332 * 176.04655 * 13 11 10 32 32 H 1.00895 * 110.99812 * 299.99730 * 13 11 10 33 33 H 0.96995 * 120.00316 * 0.02562 * 16 14 11 34 34 H 1.08994 * 109.45906 * 62.53161 * 19 17 16 35 35 H 1.09006 * 109.46616 * 302.53447 * 19 17 16 36 36 H 1.08998 * 109.48309 * 178.85980 * 21 20 19 37 37 H 1.08997 * 109.48449 * 58.83040 * 21 20 19 38 38 H 1.08999 * 109.52377 * 297.70422 * 22 21 20 39 39 H 1.08992 * 109.51970 * 177.51328 * 22 21 20 40 40 H 0.96696 * 114.00036 * 60.17887 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0014 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 6 5.5518 -2.6362 0.0022 12 1 5.9151 -2.0461 0.8436 13 7 6.0413 -2.0519 -1.2535 14 6 6.0541 -4.0515 0.1272 15 8 6.4282 -4.6514 -0.8582 16 7 6.0877 -4.6505 1.3340 17 6 6.5766 -6.0262 1.4555 18 1 7.3813 -6.1925 0.7394 19 6 5.4319 -7.0064 1.1757 20 8 5.8978 -8.3457 1.3528 21 6 6.3556 -8.6341 2.6755 22 6 7.5368 -7.7215 3.0155 23 6 7.0995 -6.2601 2.8763 24 1 7.9504 -5.6053 3.0640 25 8 6.0630 -5.9794 3.8193 26 1 -0.4850 0.8399 -0.0004 27 1 3.8747 -0.6798 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6587 -3.1508 -0.8875 30 1 3.6582 -3.1496 0.8924 31 1 7.0479 -1.9813 -1.2511 32 1 5.7178 -2.5815 -2.0490 33 1 5.7882 -4.1709 2.1221 34 1 5.0837 -6.8752 0.1512 35 1 4.6109 -6.8129 1.8662 36 1 6.6729 -9.6754 2.7314 37 1 5.5469 -8.4619 3.3858 38 1 8.3608 -7.9219 2.3307 39 1 7.8591 -7.9093 4.0396 40 1 6.3243 -6.1094 4.7411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710959326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:00 Heat of formation + Delta-G solvation = -145.074641 kcal Electronic energy + Delta-G solvation = -21651.978988 eV Core-core repulsion = 18273.102437 eV Total energy + Delta-G solvation = -3378.876551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56812 -39.24874 -36.76351 -35.42958 -34.65467 -32.74562 -32.00673 -30.49296 -30.07487 -26.71597 -25.15682 -24.30363 -22.85371 -20.76551 -20.42732 -19.79947 -17.56739 -17.29308 -16.97476 -16.63372 -16.36182 -16.04497 -15.58293 -15.16029 -14.73674 -14.21969 -14.15023 -14.04106 -13.55850 -13.29085 -12.98693 -12.59751 -12.39335 -12.34230 -12.15933 -11.72306 -11.55324 -10.98853 -10.88362 -10.82577 -10.57836 -10.36264 -9.99464 -9.96508 -9.69741 -9.58233 -9.09552 -9.01648 -8.50266 -8.38917 -5.97449 -3.94986 2.65644 3.02411 3.38864 3.45169 3.50601 3.70837 3.74978 4.26263 4.39335 4.48286 4.52926 4.60833 4.77060 4.90333 5.01274 5.17822 5.20192 5.32161 5.36839 5.40827 5.41452 5.51430 5.67230 5.69767 5.86134 6.29198 6.34192 6.49407 6.89730 6.94249 7.16145 7.25292 7.40168 7.51568 7.59624 7.66855 7.88219 8.22861 8.60210 9.07456 9.65509 11.16104 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.003941 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.489372 B = 7103.205160 C = 7425.767860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.088 4.088 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.811 5.811 14 C 0.484 3.516 15 O -0.551 6.551 16 N -0.717 5.717 17 C 0.122 3.878 18 H 0.103 0.897 19 C 0.054 3.946 20 O -0.378 6.378 21 C 0.060 3.940 22 C -0.186 4.186 23 C 0.094 3.906 24 H 0.066 0.934 25 O -0.559 6.559 26 H 0.262 0.738 27 H 0.013 0.987 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.335 0.665 32 H 0.350 0.650 33 H 0.410 0.590 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.919 -14.257 9.142 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.126 4.126 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.339 5.339 14 C 0.269 3.731 15 O -0.429 6.429 16 N -0.371 5.371 17 C 0.016 3.984 18 H 0.121 0.879 19 C -0.024 4.024 20 O -0.295 6.295 21 C -0.017 4.017 22 C -0.224 4.224 23 C 0.035 3.965 24 H 0.084 0.916 25 O -0.365 6.365 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.246 0.754 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 17.276 -13.920 7.926 23.559 hybrid contribution 1.112 0.173 1.066 1.550 sum 18.388 -13.747 8.992 24.657 Atomic orbital electron populations 1.69923 1.06353 1.26799 1.51528 1.25017 0.94695 0.99209 0.94607 0.86728 0.80231 0.83427 0.78563 1.20295 1.21737 1.18919 1.21187 0.89754 0.94352 1.50587 0.91295 1.19482 0.96355 0.91172 0.97140 1.21476 0.87911 1.01594 1.01612 1.21857 0.99424 0.87649 0.95045 0.88407 1.59037 1.15330 1.56074 1.03434 1.22734 0.76718 0.91045 0.82575 1.90663 1.48468 1.66720 1.37009 1.46036 1.66455 1.13885 1.10773 1.21587 0.98439 0.83382 0.94999 0.87950 1.22993 0.95399 0.80893 1.03117 1.87979 1.82901 1.28918 1.29727 1.22528 0.95248 0.98839 0.85073 1.22898 1.00323 0.95875 1.03332 1.22103 0.90294 0.94964 0.89152 0.91585 1.86534 1.39549 1.91304 1.19104 0.92857 0.96916 0.95242 0.92209 0.92086 0.85355 0.83568 0.75411 0.88296 0.91719 0.88823 0.92320 0.89828 0.90029 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.96 55.43 0.77 -27.57 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.70 4.78 -26.73 -0.13 -1.83 16 11 C 0.08 1.20 3.15 -68.86 -0.22 0.98 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 N -0.81 -12.67 8.44 -5.65 -0.05 -12.72 16 14 C 0.48 7.26 7.04 -10.99 -0.08 7.18 16 15 O -0.55 -9.72 15.91 5.56 0.09 -9.63 16 16 N -0.72 -8.82 5.05 -53.57 -0.27 -9.09 16 17 C 0.12 1.38 2.45 -67.69 -0.17 1.21 16 18 H 0.10 1.29 7.58 -51.93 -0.39 0.89 16 19 C 0.05 0.68 6.29 37.30 0.23 0.92 16 20 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 21 C 0.06 0.50 6.69 37.21 0.25 0.75 16 22 C -0.19 -1.21 5.84 -26.59 -0.16 -1.36 16 23 C 0.09 0.75 3.43 -26.54 -0.09 0.66 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 O -0.56 -4.34 11.66 -35.23 -0.41 -4.75 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 28 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.33 4.47 9.06 -39.29 -0.36 4.12 16 32 H 0.35 5.62 8.58 -39.29 -0.34 5.29 16 33 H 0.41 4.59 8.10 -40.82 -0.33 4.26 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.48 7.82 -51.93 -0.41 0.08 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 1.35 9.08 45.56 0.41 1.77 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -34.44 326.59 -6.41 -40.85 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.53 Total: 10.65 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.89 Total: -5.16 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.46 Total: -49.38 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.70 Total: -19.35 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.44 -6.41 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710959326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.221 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds