Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48497 * 109.46792 * 269.99918 * 3 2 1 5 5 H 1.48500 * 109.46935 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47088 * 149.99676 * 3 2 1 7 7 C 1.37875 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00178 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46910 * 55.00336 * 11 10 9 13 13 N 1.46901 * 109.46934 * 295.00085 * 11 10 9 14 14 C 1.50696 * 109.46750 * 175.00082 * 11 10 9 15 15 O 1.21278 * 120.00013 * 100.00390 * 14 11 10 16 16 N 1.34776 * 119.99865 * 279.99809 * 14 11 10 17 17 C 1.46500 * 119.99690 * 180.02562 * 16 14 11 18 18 H 1.09003 * 109.57870 * 34.84591 * 17 16 14 19 19 C 1.53281 * 109.64249 * 274.63525 * 17 16 14 20 20 O 1.42898 * 109.46421 * 182.53057 * 19 17 16 21 21 C 1.42910 * 114.09936 * 61.15847 * 20 19 17 22 22 C 1.53092 * 109.41241 * 298.84239 * 21 20 19 23 23 C 1.53180 * 109.16382 * 57.60761 * 22 21 20 24 24 H 1.09000 * 109.54416 * 183.06057 * 23 22 21 25 25 O 1.42905 * 109.54169 * 62.88302 * 23 22 21 26 26 H 0.96988 * 120.00530 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47257 * 59.99393 * 9 7 2 28 28 H 1.08999 * 109.46268 * 299.99582 * 9 7 2 29 29 H 1.09007 * 109.46999 * 59.99668 * 10 9 7 30 30 H 1.08994 * 109.47277 * 299.99565 * 10 9 7 31 31 H 1.00900 * 110.99332 * 176.04655 * 13 11 10 32 32 H 1.00895 * 110.99812 * 299.99730 * 13 11 10 33 33 H 0.96995 * 120.00316 * 0.02562 * 16 14 11 34 34 H 1.08994 * 109.45906 * 62.53161 * 19 17 16 35 35 H 1.09006 * 109.46616 * 302.53447 * 19 17 16 36 36 H 1.08998 * 109.48309 * 178.85980 * 21 20 19 37 37 H 1.08997 * 109.48449 * 58.83040 * 21 20 19 38 38 H 1.08999 * 109.52377 * 297.70422 * 22 21 20 39 39 H 1.08992 * 109.51970 * 177.51328 * 22 21 20 40 40 H 0.96696 * 114.00036 * 60.17887 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0014 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 6 5.5518 -2.6362 0.0022 12 1 5.9151 -2.0461 0.8436 13 7 6.0413 -2.0519 -1.2535 14 6 6.0541 -4.0515 0.1272 15 8 6.4282 -4.6514 -0.8582 16 7 6.0877 -4.6505 1.3340 17 6 6.5766 -6.0262 1.4555 18 1 7.3813 -6.1925 0.7394 19 6 5.4319 -7.0064 1.1757 20 8 5.8978 -8.3457 1.3528 21 6 6.3556 -8.6341 2.6755 22 6 7.5368 -7.7215 3.0155 23 6 7.0995 -6.2601 2.8763 24 1 7.9504 -5.6053 3.0640 25 8 6.0630 -5.9794 3.8193 26 1 -0.4850 0.8399 -0.0004 27 1 3.8747 -0.6798 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6587 -3.1508 -0.8875 30 1 3.6582 -3.1496 0.8924 31 1 7.0479 -1.9813 -1.2511 32 1 5.7178 -2.5815 -2.0490 33 1 5.7882 -4.1709 2.1221 34 1 5.0837 -6.8752 0.1512 35 1 4.6109 -6.8129 1.8662 36 1 6.6729 -9.6754 2.7314 37 1 5.5469 -8.4619 3.3858 38 1 8.3608 -7.9219 2.3307 39 1 7.8591 -7.9093 4.0396 40 1 6.3243 -6.1094 4.7411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710959326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = -176.228544 kcal Electronic energy + Delta-G solvation = -21653.329922 eV Core-core repulsion = 18273.102437 eV Total energy + Delta-G solvation = -3380.227485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54210 -40.25986 -37.48212 -36.89290 -35.70543 -34.78286 -32.63658 -32.28667 -31.05409 -28.33773 -25.94261 -25.64137 -24.00702 -22.11363 -21.60829 -21.01947 -18.99562 -18.33210 -17.99865 -17.95490 -17.26102 -17.02897 -16.79374 -16.26456 -15.94985 -15.72360 -15.38667 -15.04894 -14.84707 -14.66466 -14.10987 -13.97332 -13.84116 -13.52652 -13.03153 -12.90577 -12.81772 -12.53328 -12.22309 -11.95054 -11.79956 -11.66462 -11.59931 -11.29534 -11.23475 -11.13294 -10.76388 -10.70238 -10.00743 -9.67847 -8.24266 -6.27808 1.42093 1.43630 1.44582 1.56482 2.01802 2.42223 2.90462 3.12191 3.12317 3.52874 3.58122 3.73444 3.77170 3.86844 3.96390 4.07137 4.13870 4.26482 4.43172 4.57357 4.64030 4.70420 4.70749 4.77437 4.84291 4.96423 5.08894 5.14562 5.30710 5.50533 5.65918 5.73138 6.05143 6.12207 6.33108 6.42332 6.52937 6.80822 6.83285 7.10350 7.36725 8.92794 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.003941 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.489372 B = 7103.205160 C = 7425.767860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.533 4.533 8 H 0.026 0.974 9 C 0.003 3.997 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.122 0.878 13 N -0.818 5.818 14 C 0.487 3.513 15 O -0.580 6.580 16 N -0.704 5.704 17 C 0.119 3.881 18 H 0.090 0.910 19 C 0.060 3.940 20 O -0.400 6.400 21 C 0.049 3.951 22 C -0.178 4.178 23 C 0.103 3.897 24 H 0.084 0.916 25 O -0.574 6.574 26 H 0.265 0.735 27 H 0.025 0.975 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.349 0.651 32 H 0.346 0.654 33 H 0.418 0.582 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.680 -13.693 10.951 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.571 4.571 8 H 0.045 0.955 9 C -0.034 4.034 10 C -0.118 4.118 11 C -0.030 4.030 12 H 0.140 0.860 13 N -0.347 5.347 14 C 0.272 3.728 15 O -0.459 6.459 16 N -0.357 5.357 17 C 0.013 3.987 18 H 0.108 0.892 19 C -0.018 4.018 20 O -0.318 6.318 21 C -0.026 4.026 22 C -0.216 4.216 23 C 0.043 3.957 24 H 0.102 0.898 25 O -0.383 6.383 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 20.067 -13.379 9.790 26.029 hybrid contribution 0.166 -0.144 0.535 0.579 sum 20.233 -13.523 10.326 26.436 Atomic orbital electron populations 1.70084 1.08440 1.28072 1.53102 1.26032 0.95573 1.03652 0.94161 0.85580 0.79595 0.77913 0.79017 1.19730 1.21278 1.16338 1.21573 0.92580 0.92848 1.50062 0.95532 1.19365 0.92815 0.93870 0.97361 1.21260 0.90902 0.98778 1.00866 1.21658 0.96519 0.88695 0.96086 0.86043 1.59023 1.16578 1.55915 1.03146 1.22519 0.76616 0.90703 0.82947 1.90657 1.49983 1.67187 1.38121 1.45933 1.65318 1.14292 1.10152 1.21654 0.97372 0.82081 0.97557 0.89184 1.22772 0.95898 0.82002 1.01176 1.87943 1.83226 1.28339 1.32278 1.22829 0.96124 1.00463 0.83234 1.22873 0.99232 0.94141 1.05343 1.21993 0.90367 0.96351 0.86952 0.89775 1.86490 1.39862 1.91416 1.20575 0.92643 0.95679 0.95342 0.94246 0.91813 0.83701 0.84071 0.74473 0.91272 0.92410 0.87028 0.92211 0.89797 0.86645 0.74698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.12 13.96 21.45 0.30 -60.82 16 2 C 0.00 0.11 5.47 84.65 0.46 0.58 16 3 Si 0.96 45.02 27.47 68.60 1.88 46.91 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.53 -31.17 9.66 25.60 0.25 -30.93 16 8 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 9 C 0.00 0.16 3.93 29.85 0.12 0.27 16 10 C -0.08 -3.07 4.78 30.59 0.15 -2.92 16 11 C 0.09 2.57 3.15 44.17 0.14 2.71 16 12 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 13 N -0.82 -24.25 8.44 -171.80 -1.45 -25.70 16 14 C 0.49 14.18 7.04 87.66 0.62 14.80 16 15 O -0.58 -20.39 15.91 -3.02 -0.05 -20.43 16 16 N -0.70 -16.39 5.05 -441.80 -2.23 -18.62 16 17 C 0.12 2.58 2.45 45.15 0.11 2.69 16 18 H 0.09 2.21 7.58 -2.39 -0.02 2.19 16 19 C 0.06 1.54 6.29 72.08 0.45 1.99 16 20 O -0.40 -9.65 10.77 -148.98 -1.60 -11.25 16 21 C 0.05 0.73 6.69 72.01 0.48 1.21 16 22 C -0.18 -1.77 5.84 30.69 0.18 -1.59 16 23 C 0.10 1.36 3.43 30.72 0.11 1.46 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 O -0.57 -7.30 11.66 -148.98 -1.74 -9.04 16 26 H 0.26 15.78 8.31 -92.72 -0.77 15.01 16 27 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 28 H 0.03 1.33 7.18 -2.39 -0.02 1.31 16 29 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.35 8.61 9.06 -89.69 -0.81 7.80 16 32 H 0.35 10.90 8.58 -89.70 -0.77 10.13 16 33 H 0.42 8.49 8.10 -92.71 -0.75 7.74 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 1.52 7.82 -2.38 -0.02 1.50 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 0.87 7.82 -2.39 -0.02 0.85 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.40 1.42 9.08 -74.06 -0.67 0.75 16 Total: -1.00 -76.33 326.59 -3.81 -80.14 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -1.98 Total: 28.56 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.06 Total: -9.73 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -3.38 Total: -105.14 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -3.39 Total: -40.73 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -76.33 -3.81 -80.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710959326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.092 kcal (2) G-P(sol) polarization free energy of solvation -76.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds