Wall clock time and date at job start Mon Mar 30 2020 04:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99907 * 2 1 4 4 H 1.48503 * 109.47254 * 269.99940 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99914 * 3 2 1 6 6 H 1.48499 * 109.46989 * 150.00082 * 3 2 1 7 7 C 1.37871 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00335 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47347 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46815 * 54.99713 * 11 10 9 13 13 N 1.46895 * 109.46816 * 295.00142 * 11 10 9 14 14 C 1.50691 * 109.47178 * 175.00242 * 11 10 9 15 15 O 1.21277 * 120.00263 * 99.99606 * 14 11 10 16 16 N 1.34783 * 120.00183 * 279.99916 * 14 11 10 17 17 C 1.46493 * 120.00147 * 179.97438 * 16 14 11 18 18 H 1.08997 * 109.52400 * 34.87658 * 17 16 14 19 19 C 1.53095 * 109.52499 * 274.68548 * 17 16 14 20 20 O 1.42906 * 109.41780 * 182.48625 * 19 17 16 21 21 C 1.42903 * 114.09431 * 61.15768 * 20 19 17 22 22 C 1.53095 * 109.41530 * 298.84283 * 21 20 19 23 23 C 1.53176 * 109.16286 * 57.61206 * 22 21 20 24 24 H 1.08994 * 109.54424 * 62.88738 * 23 22 21 25 25 O 1.42903 * 109.54197 * 183.05967 * 23 22 21 26 26 H 0.97003 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.46599 * 60.00312 * 9 7 2 28 28 H 1.08998 * 109.47208 * 300.00690 * 9 7 2 29 29 H 1.09001 * 109.47117 * 60.00148 * 10 9 7 30 30 H 1.08998 * 109.47485 * 300.00478 * 10 9 7 31 31 H 1.00902 * 110.99652 * 176.04382 * 13 11 10 32 32 H 1.00897 * 111.00680 * 299.99759 * 13 11 10 33 33 H 0.97003 * 119.99665 * 0.02562 * 16 14 11 34 34 H 1.08998 * 109.47951 * 302.47326 * 19 17 16 35 35 H 1.09003 * 109.47728 * 62.50147 * 19 17 16 36 36 H 1.08997 * 109.48187 * 178.86172 * 21 20 19 37 37 H 1.08997 * 109.47990 * 58.82878 * 21 20 19 38 38 H 1.09001 * 109.52293 * 297.69958 * 22 21 20 39 39 H 1.09007 * 109.52035 * 177.51726 * 22 21 20 40 40 H 0.96695 * 114.00273 * 300.00241 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7885 -5.0068 -0.8432 13 7 0.7282 -5.1188 1.2537 14 6 2.4550 -6.1297 -0.1249 15 8 2.7865 -6.7535 0.8609 16 7 2.9584 -6.4585 -1.3312 17 6 3.9063 -7.5689 -1.4515 18 1 3.6468 -8.3485 -0.7353 19 6 5.3239 -7.0644 -1.1692 20 8 6.2531 -8.1360 -1.3437 21 6 6.2775 -8.6775 -2.6659 22 6 4.8982 -9.2469 -3.0083 23 6 3.8491 -8.1392 -2.8720 24 1 4.0589 -7.3478 -3.5914 25 8 2.5493 -8.6787 -3.1204 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8904 31 1 0.1638 -5.9552 1.2509 32 1 1.3477 -5.1033 2.0500 33 1 2.6935 -5.9594 -2.1197 34 1 5.5665 -6.2568 -1.8599 35 1 5.3815 -6.6964 -0.1448 36 1 7.0221 -9.4717 -2.7198 37 1 6.5327 -7.8911 -3.3761 38 1 4.6599 -10.0608 -2.3235 39 1 4.9024 -9.6207 -4.0322 40 1 2.4448 -9.0630 -4.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710959330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:05 Heat of formation + Delta-G solvation = -148.358451 kcal Electronic energy + Delta-G solvation = -21511.743308 eV Core-core repulsion = 18132.724361 eV Total energy + Delta-G solvation = -3379.018947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50237 -39.15010 -37.01039 -35.28108 -34.62035 -32.78842 -32.06700 -30.20899 -29.96820 -26.38714 -24.88827 -24.29439 -22.96017 -20.93871 -20.62809 -19.71244 -17.89667 -17.29588 -16.91913 -16.48341 -16.18120 -15.72535 -15.45477 -15.11042 -14.54732 -14.27505 -14.23633 -14.03039 -13.51324 -13.37048 -13.23321 -12.74253 -12.31592 -12.01258 -11.88472 -11.54421 -11.36169 -10.95352 -10.89239 -10.67780 -10.55111 -10.43392 -10.22298 -10.07940 -9.79387 -9.36650 -9.04127 -8.98797 -8.34352 -8.19434 -5.93476 -3.95750 2.77214 3.04504 3.34450 3.41178 3.44557 3.59635 3.70587 4.25540 4.37277 4.47766 4.50619 4.64065 4.82891 4.90413 5.03373 5.12696 5.18393 5.22435 5.33777 5.42039 5.51975 5.56134 5.64204 5.80138 5.84623 6.35167 6.43985 6.65190 6.83210 7.09027 7.21609 7.38476 7.59797 7.76578 7.82365 7.96821 8.13766 8.31659 8.48639 9.12341 9.67417 11.17410 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.003811 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.390134 B = 7345.292687 C = 7785.955389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.486 3.514 15 O -0.552 6.552 16 N -0.717 5.717 17 C 0.120 3.880 18 H 0.100 0.900 19 C 0.054 3.946 20 O -0.375 6.375 21 C 0.058 3.942 22 C -0.186 4.186 23 C 0.096 3.904 24 H 0.063 0.937 25 O -0.556 6.556 26 H 0.259 0.741 27 H 0.013 0.987 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.334 0.666 32 H 0.348 0.652 33 H 0.404 0.596 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -18.690 -9.419 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.036 4.036 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.429 6.429 16 N -0.370 5.370 17 C 0.014 3.986 18 H 0.118 0.882 19 C -0.024 4.024 20 O -0.292 6.292 21 C -0.019 4.019 22 C -0.225 4.225 23 C 0.036 3.964 24 H 0.081 0.919 25 O -0.361 6.361 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.239 0.761 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.758 -18.185 -8.121 21.757 hybrid contribution 0.845 0.095 -1.219 1.486 sum 9.603 -18.090 -9.340 22.510 Atomic orbital electron populations 1.69977 1.05950 1.26409 1.50833 1.24990 0.94799 0.99044 0.95489 0.86654 0.79905 0.83801 0.77961 1.20806 1.21253 1.19972 1.21277 0.92884 0.91331 1.50589 0.92996 1.19020 0.93573 0.89805 0.98241 1.21661 0.98856 0.92203 1.00619 1.21836 0.93509 0.93120 0.95179 0.88387 1.59002 1.26866 1.44315 1.03244 1.22816 0.81866 0.85701 0.82447 1.90652 1.61158 1.54057 1.37056 1.45989 1.46098 1.34278 1.10683 1.21547 0.90094 0.90711 0.96287 0.88202 1.23052 0.86679 0.88971 1.03733 1.88015 1.60051 1.51405 1.29734 1.22596 0.96200 0.98289 0.84794 1.22969 0.96219 0.99879 1.03392 1.22100 0.83372 0.94677 0.96237 0.91863 1.86617 1.30960 1.80054 1.38462 0.93099 0.96871 0.94630 0.92805 0.92902 0.85399 0.83837 0.76091 0.92367 0.87461 0.88264 0.92729 0.89780 0.90042 0.77404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.90 4.78 -26.73 -0.13 -2.03 16 11 C 0.08 1.35 3.15 -68.87 -0.22 1.13 16 12 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 13 N -0.81 -13.88 8.44 -5.66 -0.05 -13.93 16 14 C 0.49 7.76 7.04 -10.99 -0.08 7.69 16 15 O -0.55 -10.32 15.91 5.56 0.09 -10.23 16 16 N -0.72 -9.20 5.01 -53.68 -0.27 -9.47 16 17 C 0.12 1.42 2.34 -67.79 -0.16 1.26 16 18 H 0.10 1.46 7.58 -51.93 -0.39 1.06 16 19 C 0.05 0.62 6.42 37.21 0.24 0.86 16 20 O -0.37 -4.25 10.77 -35.23 -0.38 -4.63 16 21 C 0.06 0.44 6.84 37.21 0.25 0.69 16 22 C -0.19 -1.28 5.76 -26.59 -0.15 -1.43 16 23 C 0.10 0.82 3.06 -26.55 -0.08 0.74 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 O -0.56 -5.07 13.26 -35.23 -0.47 -5.54 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.33 5.08 9.06 -39.29 -0.36 4.72 16 32 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 33 H 0.40 4.48 8.61 -40.82 -0.35 4.13 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.38 1.71 9.08 45.56 0.41 2.12 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -34.20 332.62 -6.83 -41.03 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.62 Total: 11.18 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.87 Total: -3.92 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.42 Total: -49.58 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.76 Total: -20.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.20 -6.83 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710959330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.325 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds