Wall clock time and date at job start Mon Mar 30 2020 04:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99907 * 2 1 4 4 H 1.48503 * 109.47254 * 269.99940 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99914 * 3 2 1 6 6 H 1.48499 * 109.46989 * 150.00082 * 3 2 1 7 7 C 1.37871 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00335 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47347 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46815 * 54.99713 * 11 10 9 13 13 N 1.46895 * 109.46816 * 295.00142 * 11 10 9 14 14 C 1.50691 * 109.47178 * 175.00242 * 11 10 9 15 15 O 1.21277 * 120.00263 * 99.99606 * 14 11 10 16 16 N 1.34783 * 120.00183 * 279.99916 * 14 11 10 17 17 C 1.46493 * 120.00147 * 179.97438 * 16 14 11 18 18 H 1.08997 * 109.52400 * 34.87658 * 17 16 14 19 19 C 1.53095 * 109.52499 * 274.68548 * 17 16 14 20 20 O 1.42906 * 109.41780 * 182.48625 * 19 17 16 21 21 C 1.42903 * 114.09431 * 61.15768 * 20 19 17 22 22 C 1.53095 * 109.41530 * 298.84283 * 21 20 19 23 23 C 1.53176 * 109.16286 * 57.61206 * 22 21 20 24 24 H 1.08994 * 109.54424 * 62.88738 * 23 22 21 25 25 O 1.42903 * 109.54197 * 183.05967 * 23 22 21 26 26 H 0.97003 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.46599 * 60.00312 * 9 7 2 28 28 H 1.08998 * 109.47208 * 300.00690 * 9 7 2 29 29 H 1.09001 * 109.47117 * 60.00148 * 10 9 7 30 30 H 1.08998 * 109.47485 * 300.00478 * 10 9 7 31 31 H 1.00902 * 110.99652 * 176.04382 * 13 11 10 32 32 H 1.00897 * 111.00680 * 299.99759 * 13 11 10 33 33 H 0.97003 * 119.99665 * 0.02562 * 16 14 11 34 34 H 1.08998 * 109.47951 * 302.47326 * 19 17 16 35 35 H 1.09003 * 109.47728 * 62.50147 * 19 17 16 36 36 H 1.08997 * 109.48187 * 178.86172 * 21 20 19 37 37 H 1.08997 * 109.47990 * 58.82878 * 21 20 19 38 38 H 1.09001 * 109.52293 * 297.69958 * 22 21 20 39 39 H 1.09007 * 109.52035 * 177.51726 * 22 21 20 40 40 H 0.96695 * 114.00273 * 300.00241 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7885 -5.0068 -0.8432 13 7 0.7282 -5.1188 1.2537 14 6 2.4550 -6.1297 -0.1249 15 8 2.7865 -6.7535 0.8609 16 7 2.9584 -6.4585 -1.3312 17 6 3.9063 -7.5689 -1.4515 18 1 3.6468 -8.3485 -0.7353 19 6 5.3239 -7.0644 -1.1692 20 8 6.2531 -8.1360 -1.3437 21 6 6.2775 -8.6775 -2.6659 22 6 4.8982 -9.2469 -3.0083 23 6 3.8491 -8.1392 -2.8720 24 1 4.0589 -7.3478 -3.5914 25 8 2.5493 -8.6787 -3.1204 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8904 31 1 0.1638 -5.9552 1.2509 32 1 1.3477 -5.1033 2.0500 33 1 2.6935 -5.9594 -2.1197 34 1 5.5665 -6.2568 -1.8599 35 1 5.3815 -6.6964 -0.1448 36 1 7.0221 -9.4717 -2.7198 37 1 6.5327 -7.8911 -3.3761 38 1 4.6599 -10.0608 -2.3235 39 1 4.9024 -9.6207 -4.0322 40 1 2.4448 -9.0630 -4.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710959330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:04 Heat of formation + Delta-G solvation = -178.792476 kcal Electronic energy + Delta-G solvation = -21513.063027 eV Core-core repulsion = 18132.724361 eV Total energy + Delta-G solvation = -3380.338666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51938 -40.19920 -37.72741 -36.83551 -35.74129 -34.80391 -32.71792 -31.92516 -31.05881 -28.08344 -25.80862 -25.56395 -24.12642 -22.30022 -21.78902 -21.01981 -18.77508 -18.50297 -18.03212 -17.98563 -17.26544 -16.91619 -16.65969 -16.40664 -15.94512 -15.64346 -15.24859 -15.01802 -14.87103 -14.28504 -14.12210 -14.02195 -13.80804 -13.62030 -13.40736 -12.78432 -12.58018 -12.51177 -12.26966 -12.03077 -11.80549 -11.69045 -11.65272 -11.26202 -11.06460 -11.02257 -10.90675 -10.47707 -10.10525 -9.63788 -8.12570 -6.22892 1.42416 1.44270 1.47573 1.55073 1.99680 2.45690 2.84811 3.01561 3.20582 3.51436 3.59686 3.71988 3.77166 3.91522 3.94660 4.09770 4.12419 4.31692 4.44572 4.48775 4.61789 4.65191 4.74859 4.78699 4.90355 4.94843 5.10984 5.26105 5.31560 5.58544 5.85669 5.99890 6.06399 6.10806 6.31411 6.41052 6.51189 6.81714 6.95937 7.10703 7.45326 8.98707 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.003811 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.390134 B = 7345.292687 C = 7785.955389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.081 4.081 11 C 0.087 3.913 12 H 0.110 0.890 13 N -0.818 5.818 14 C 0.490 3.510 15 O -0.582 6.582 16 N -0.702 5.702 17 C 0.118 3.882 18 H 0.067 0.933 19 C 0.060 3.940 20 O -0.397 6.397 21 C 0.049 3.951 22 C -0.178 4.178 23 C 0.101 3.899 24 H 0.087 0.913 25 O -0.577 6.577 26 H 0.262 0.738 27 H -0.005 1.005 28 H 0.005 0.995 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.345 0.655 33 H 0.416 0.584 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -18.927 -11.506 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.119 4.119 11 C -0.029 4.029 12 H 0.127 0.873 13 N -0.347 5.347 14 C 0.276 3.724 15 O -0.462 6.462 16 N -0.355 5.355 17 C 0.012 3.988 18 H 0.085 0.915 19 C -0.019 4.019 20 O -0.315 6.315 21 C -0.027 4.027 22 C -0.216 4.216 23 C 0.041 3.959 24 H 0.104 0.896 25 O -0.386 6.386 26 H 0.070 0.930 27 H 0.013 0.987 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.196 -18.449 -10.267 23.447 hybrid contribution 0.387 0.098 -0.603 0.724 sum 10.584 -18.350 -10.871 23.810 Atomic orbital electron populations 1.70110 1.07666 1.27494 1.51802 1.25902 0.95680 1.03039 0.95001 0.85533 0.78602 0.78911 0.78481 1.19568 1.21062 1.19104 1.21732 0.93392 0.92674 1.50294 0.92508 1.18835 0.93905 0.91367 0.95771 1.21396 0.97723 0.91867 1.00945 1.21639 0.93652 0.92058 0.95521 0.87269 1.58988 1.27191 1.45213 1.03324 1.22448 0.81649 0.85290 0.83012 1.90645 1.62139 1.55082 1.38303 1.45855 1.45380 1.34241 1.09995 1.21618 0.89754 0.89382 0.98080 0.91495 1.22859 0.86665 0.89713 1.02614 1.87985 1.59806 1.51405 1.32347 1.22906 0.97113 0.99306 0.83353 1.22922 0.95053 0.98639 1.04992 1.22065 0.83848 0.95834 0.94114 0.89561 1.86565 1.31156 1.80416 1.40442 0.92956 0.98698 0.97703 0.93851 0.91126 0.84141 0.84131 0.74755 0.90622 0.90295 0.86571 0.90882 0.91411 0.86617 0.74973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.04 1.99 4.86 29.85 0.15 2.14 16 10 C -0.08 -3.24 4.78 30.60 0.15 -3.09 16 11 C 0.09 2.94 3.15 44.17 0.14 3.08 16 12 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 13 N -0.82 -28.60 8.44 -171.81 -1.45 -30.05 16 14 C 0.49 15.58 7.04 87.65 0.62 16.20 16 15 O -0.58 -22.14 15.91 -3.02 -0.05 -22.19 16 16 N -0.70 -17.26 5.01 -442.12 -2.21 -19.48 16 17 C 0.12 2.69 2.34 45.08 0.11 2.79 16 18 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 19 C 0.06 1.34 6.42 72.01 0.46 1.81 16 20 O -0.40 -8.60 10.77 -148.98 -1.60 -10.21 16 21 C 0.05 0.61 6.84 72.01 0.49 1.10 16 22 C -0.18 -1.94 5.76 30.69 0.18 -1.77 16 23 C 0.10 1.48 3.06 30.71 0.09 1.57 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 O -0.58 -9.16 13.26 -148.98 -1.97 -11.14 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 27 H -0.01 -0.30 8.14 -2.38 -0.02 -0.31 16 28 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.35 10.58 9.06 -89.69 -0.81 9.76 16 32 H 0.35 12.33 8.58 -89.70 -0.77 11.56 16 33 H 0.42 8.36 8.61 -92.71 -0.80 7.57 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.40 2.38 9.08 -74.06 -0.67 1.71 16 Total: -1.00 -74.91 332.62 -3.88 -78.79 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -1.98 Total: 30.54 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 3.07 Total: -6.08 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.38 Total: -106.01 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -3.63 Total: -43.53 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.91 -3.88 -78.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710959330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.007 kcal (2) G-P(sol) polarization free energy of solvation -74.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds