Wall clock time and date at job start Mon Mar 30 2020 04:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46989 * 54.99219 * 11 10 9 13 13 N 1.46902 * 109.46773 * 295.00006 * 11 10 9 14 14 C 1.50695 * 109.47535 * 174.99737 * 11 10 9 15 15 O 1.21283 * 120.00203 * 99.99517 * 14 11 10 16 16 N 1.34781 * 120.00012 * 279.99630 * 14 11 10 17 17 C 1.46494 * 119.99886 * 179.97438 * 16 14 11 18 18 H 1.09000 * 109.52884 * 324.88005 * 17 16 14 19 19 C 1.53095 * 109.52070 * 85.00656 * 17 16 14 20 20 O 1.42905 * 109.41700 * 62.29430 * 19 17 16 21 21 C 1.42898 * 114.09824 * 61.15681 * 20 19 17 22 22 C 1.53089 * 109.41751 * 298.84585 * 21 20 19 23 23 C 1.53178 * 109.16723 * 57.60814 * 22 21 20 24 24 H 1.09002 * 109.54481 * 62.88075 * 23 22 21 25 25 O 1.42897 * 109.54839 * 183.15644 * 23 22 21 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.00904 * 110.99762 * 299.99575 * 13 11 10 32 32 H 1.00899 * 111.00097 * 63.94846 * 13 11 10 33 33 H 0.97003 * 119.99745 * 0.02562 * 16 14 11 34 34 H 1.08998 * 109.47737 * 182.28004 * 19 17 16 35 35 H 1.09001 * 109.47779 * 302.31261 * 19 17 16 36 36 H 1.09003 * 109.48085 * 58.82753 * 21 20 19 37 37 H 1.08993 * 109.48482 * 178.85829 * 21 20 19 38 38 H 1.09005 * 109.52349 * 177.51309 * 22 21 20 39 39 H 1.09005 * 109.52101 * 297.63790 * 22 21 20 40 40 H 0.96705 * 113.99831 * 299.55514 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9149 -2.0480 0.8409 13 7 6.0411 -2.0501 -1.2561 14 6 6.0539 -4.0521 0.1211 15 8 6.4278 -4.6504 -0.8654 16 7 6.0875 -4.6533 1.3269 17 6 6.5753 -6.0295 1.4459 18 1 6.2851 -6.5967 0.5615 19 6 8.1011 -6.0224 1.5712 20 8 8.4769 -5.3266 2.7615 21 6 7.9800 -5.9173 3.9641 22 6 6.4494 -5.9203 3.9350 23 6 5.9714 -6.6806 2.6941 24 1 6.2949 -7.7197 2.7560 25 8 4.5455 -6.6256 2.6194 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.7175 -2.5784 -2.0526 32 1 5.7716 -1.0807 -1.3315 33 1 5.7880 -4.1749 2.1159 34 1 8.4667 -7.0481 1.6189 35 1 8.5346 -5.5218 0.7053 36 1 8.3440 -6.9417 4.0432 37 1 8.3262 -5.3412 4.8221 38 1 6.0690 -6.4103 4.8313 39 1 6.0838 -4.8940 3.8979 40 1 4.0963 -7.0209 3.3791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710959332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:07 Heat of formation + Delta-G solvation = -142.914368 kcal Electronic energy + Delta-G solvation = -21874.195161 eV Core-core repulsion = 18495.412287 eV Total energy + Delta-G solvation = -3378.782874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56156 -38.91887 -36.90577 -35.59415 -34.29813 -32.76190 -31.92500 -30.33903 -30.25121 -26.73495 -24.84214 -24.25671 -23.35307 -20.89518 -20.05134 -19.72753 -17.75398 -17.60225 -16.68292 -16.67984 -16.14835 -15.82419 -15.50543 -14.73709 -14.44506 -14.24561 -14.18050 -13.88705 -13.56519 -13.32483 -12.98011 -12.87914 -12.64771 -12.52794 -12.01529 -11.77235 -11.35901 -11.15734 -10.98872 -10.93211 -10.36255 -10.28381 -10.13884 -10.02506 -9.85315 -9.33760 -9.27285 -8.84908 -8.58870 -8.25258 -6.08517 -4.07584 2.94738 3.19598 3.27399 3.35598 3.37533 3.56228 3.80052 4.27169 4.37590 4.40655 4.52333 4.67726 4.95128 4.98770 5.11462 5.11967 5.19605 5.24682 5.28101 5.35013 5.50881 5.54002 5.67388 5.68714 5.76125 6.22345 6.39892 6.51537 6.71912 6.88485 7.15297 7.26562 7.33171 7.39824 7.70162 7.72082 7.83927 8.47815 8.49746 8.96154 9.52935 11.04812 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.004367 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.478269 B = 6410.154320 C = 6800.685910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.073 3.927 12 H 0.095 0.905 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.543 6.543 16 N -0.710 5.710 17 C 0.121 3.879 18 H 0.102 0.898 19 C 0.052 3.948 20 O -0.373 6.373 21 C 0.061 3.939 22 C -0.193 4.193 23 C 0.096 3.904 24 H 0.068 0.932 25 O -0.552 6.552 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.347 0.653 32 H 0.350 0.650 33 H 0.402 0.598 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.573 -13.605 9.473 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.168 4.168 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.419 6.419 16 N -0.363 5.363 17 C 0.015 3.985 18 H 0.120 0.880 19 C -0.026 4.026 20 O -0.291 6.291 21 C -0.017 4.017 22 C -0.231 4.231 23 C 0.036 3.964 24 H 0.086 0.914 25 O -0.357 6.357 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.238 0.762 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 16.667 -13.612 8.455 23.121 hybrid contribution -1.273 0.695 0.877 1.695 sum 15.394 -12.917 9.331 22.156 Atomic orbital electron populations 1.69918 1.06338 1.26947 1.50850 1.25044 0.94750 0.99201 0.94466 0.86759 0.80333 0.83541 0.78502 1.20291 1.18966 1.21361 1.21083 0.89266 0.94528 1.51119 0.91065 1.19578 0.97526 0.91458 0.96247 1.22186 0.91260 1.00946 1.02437 1.21479 0.95647 0.91682 0.95415 0.88659 1.58735 1.66729 1.07367 1.03382 1.20755 0.76405 0.88722 0.82422 1.90621 1.48001 1.66170 1.37092 1.45713 1.66540 1.13887 1.10180 1.21523 0.93714 0.84717 0.98531 0.88033 1.23073 0.93279 0.97532 0.88696 1.88019 1.74175 1.53225 1.13688 1.22559 0.92118 0.98584 0.88390 1.22996 0.97947 1.03165 0.98993 1.22056 0.82228 0.98009 0.94059 0.91381 1.86667 1.17050 1.83968 1.48017 0.92679 0.96620 0.96832 0.91804 0.92120 0.83911 0.83549 0.76237 0.92165 0.87403 0.93015 0.88410 0.90139 0.89841 0.77315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.25 3.81 -27.88 -0.11 -0.35 16 10 C -0.13 -2.54 4.78 -26.73 -0.13 -2.67 16 11 C 0.07 1.24 3.21 -68.87 -0.22 1.02 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 13 N -0.83 -14.05 8.94 -5.66 -0.05 -14.10 16 14 C 0.53 8.91 7.04 -10.99 -0.08 8.83 16 15 O -0.54 -10.51 15.92 5.55 0.09 -10.42 16 16 N -0.71 -9.67 4.73 -53.67 -0.25 -9.92 16 17 C 0.12 1.40 2.54 -67.79 -0.17 1.23 16 18 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 19 C 0.05 0.54 6.45 37.21 0.24 0.78 16 20 O -0.37 -4.01 10.67 -35.23 -0.38 -4.38 16 21 C 0.06 0.44 6.84 37.20 0.25 0.70 16 22 C -0.19 -1.38 5.58 -26.59 -0.15 -1.53 16 23 C 0.10 0.83 3.28 -26.54 -0.09 0.75 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 O -0.55 -5.66 13.13 -35.23 -0.46 -6.12 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.36 5.92 -51.93 -0.31 0.05 16 28 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.35 5.98 8.58 -39.29 -0.34 5.65 16 32 H 0.35 5.74 7.55 -39.29 -0.30 5.45 16 33 H 0.40 5.06 7.08 -40.82 -0.29 4.77 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.71 6.73 -51.93 -0.35 0.36 16 40 H 0.38 2.20 9.09 45.56 0.41 2.61 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -34.46 323.90 -6.29 -40.75 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.34 Total: 14.05 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.88 Total: -4.51 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.47 Total: -50.99 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.75 Total: -20.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.46 -6.29 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710959332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.162 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds