Wall clock time and date at job start Mon Mar 30 2020 04:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46989 * 54.99219 * 11 10 9 13 13 N 1.46902 * 109.46773 * 295.00006 * 11 10 9 14 14 C 1.50695 * 109.47535 * 174.99737 * 11 10 9 15 15 O 1.21283 * 120.00203 * 99.99517 * 14 11 10 16 16 N 1.34781 * 120.00012 * 279.99630 * 14 11 10 17 17 C 1.46494 * 119.99886 * 179.97438 * 16 14 11 18 18 H 1.09000 * 109.52884 * 324.88005 * 17 16 14 19 19 C 1.53095 * 109.52070 * 85.00656 * 17 16 14 20 20 O 1.42905 * 109.41700 * 62.29430 * 19 17 16 21 21 C 1.42898 * 114.09824 * 61.15681 * 20 19 17 22 22 C 1.53089 * 109.41751 * 298.84585 * 21 20 19 23 23 C 1.53178 * 109.16723 * 57.60814 * 22 21 20 24 24 H 1.09002 * 109.54481 * 62.88075 * 23 22 21 25 25 O 1.42897 * 109.54839 * 183.15644 * 23 22 21 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.00904 * 110.99762 * 299.99575 * 13 11 10 32 32 H 1.00899 * 111.00097 * 63.94846 * 13 11 10 33 33 H 0.97003 * 119.99745 * 0.02562 * 16 14 11 34 34 H 1.08998 * 109.47737 * 182.28004 * 19 17 16 35 35 H 1.09001 * 109.47779 * 302.31261 * 19 17 16 36 36 H 1.09003 * 109.48085 * 58.82753 * 21 20 19 37 37 H 1.08993 * 109.48482 * 178.85829 * 21 20 19 38 38 H 1.09005 * 109.52349 * 177.51309 * 22 21 20 39 39 H 1.09005 * 109.52101 * 297.63790 * 22 21 20 40 40 H 0.96705 * 113.99831 * 299.55514 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9149 -2.0480 0.8409 13 7 6.0411 -2.0501 -1.2561 14 6 6.0539 -4.0521 0.1211 15 8 6.4278 -4.6504 -0.8654 16 7 6.0875 -4.6533 1.3269 17 6 6.5753 -6.0295 1.4459 18 1 6.2851 -6.5967 0.5615 19 6 8.1011 -6.0224 1.5712 20 8 8.4769 -5.3266 2.7615 21 6 7.9800 -5.9173 3.9641 22 6 6.4494 -5.9203 3.9350 23 6 5.9714 -6.6806 2.6941 24 1 6.2949 -7.7197 2.7560 25 8 4.5455 -6.6256 2.6194 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.7175 -2.5784 -2.0526 32 1 5.7716 -1.0807 -1.3315 33 1 5.7880 -4.1749 2.1159 34 1 8.4667 -7.0481 1.6189 35 1 8.5346 -5.5218 0.7053 36 1 8.3440 -6.9417 4.0432 37 1 8.3262 -5.3412 4.8221 38 1 6.0690 -6.4103 4.8313 39 1 6.0838 -4.8940 3.8979 40 1 4.0963 -7.0209 3.3791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710959332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:07 Heat of formation + Delta-G solvation = -174.135570 kcal Electronic energy + Delta-G solvation = -21875.549014 eV Core-core repulsion = 18495.412287 eV Total energy + Delta-G solvation = -3380.136727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53030 -40.02190 -37.63861 -37.14230 -35.39550 -34.81547 -32.58363 -32.09013 -31.27172 -28.34621 -25.77221 -25.45770 -24.35236 -22.40930 -21.41178 -20.74855 -19.20335 -18.47604 -18.46524 -17.53840 -17.03182 -16.73415 -16.36746 -16.28612 -15.94149 -15.71660 -15.48616 -14.96404 -14.71559 -14.63405 -14.32513 -14.00973 -13.92637 -13.52577 -13.40843 -13.06564 -12.70519 -12.69240 -12.11066 -11.86280 -11.84944 -11.71061 -11.70038 -11.42184 -11.01583 -10.89208 -10.77812 -10.73407 -9.91994 -9.66247 -8.30423 -6.36109 1.37674 1.40003 1.51394 1.62004 2.10233 2.36019 2.87549 3.04953 3.10968 3.60211 3.68455 3.74179 3.78427 3.88167 4.07123 4.10158 4.17334 4.32379 4.41391 4.54185 4.57157 4.59955 4.70198 4.73359 4.78808 4.92729 4.98293 5.16699 5.34368 5.43110 5.46082 5.61678 6.04271 6.20426 6.24741 6.47684 6.52363 6.71935 6.84347 7.23339 7.28590 8.86547 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.004367 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.478269 B = 6410.154320 C = 6800.685910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.239 1.239 6 H -0.288 1.288 7 C -0.536 4.536 8 H 0.024 0.976 9 C -0.005 4.005 10 C -0.116 4.116 11 C 0.081 3.919 12 H 0.115 0.885 13 N -0.828 5.828 14 C 0.525 3.475 15 O -0.574 6.574 16 N -0.699 5.699 17 C 0.112 3.888 18 H 0.079 0.921 19 C 0.060 3.940 20 O -0.394 6.394 21 C 0.055 3.945 22 C -0.186 4.186 23 C 0.100 3.900 24 H 0.095 0.905 25 O -0.580 6.580 26 H 0.266 0.734 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.345 0.655 32 H 0.354 0.646 33 H 0.408 0.592 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.751 -13.359 11.116 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.162 1.162 6 H -0.214 1.214 7 C -0.574 4.574 8 H 0.043 0.957 9 C -0.043 4.043 10 C -0.156 4.156 11 C -0.034 4.034 12 H 0.133 0.867 13 N -0.360 5.360 14 C 0.312 3.688 15 O -0.453 6.453 16 N -0.351 5.351 17 C 0.006 3.994 18 H 0.097 0.903 19 C -0.018 4.018 20 O -0.313 6.313 21 C -0.021 4.021 22 C -0.224 4.224 23 C 0.040 3.960 24 H 0.113 0.887 25 O -0.389 6.389 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.245 0.755 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 18.859 -13.397 10.146 25.260 hybrid contribution -2.030 0.498 0.413 2.131 sum 16.829 -12.899 10.559 23.687 Atomic orbital electron populations 1.70085 1.08537 1.28265 1.52432 1.26080 0.95631 1.03755 0.93860 0.85592 0.79646 0.77635 0.79373 1.18912 1.16234 1.21368 1.21424 0.92143 0.92917 1.50876 0.95723 1.19498 0.93897 0.93662 0.97203 1.21987 0.93531 0.98741 1.01294 1.21402 0.93241 0.92512 0.96224 0.86717 1.58751 1.66435 1.07581 1.03227 1.20724 0.76469 0.88623 0.82981 1.90605 1.49704 1.66733 1.38240 1.45682 1.65278 1.14785 1.09322 1.21763 0.95010 0.83237 0.99383 0.90278 1.22916 0.91983 0.98709 0.88210 1.87988 1.74554 1.54206 1.14572 1.22804 0.92057 0.99977 0.87298 1.22952 0.97897 1.02252 0.99267 1.22103 0.81526 0.99306 0.93016 0.88698 1.86614 1.18100 1.84545 1.49642 0.92473 0.95562 0.95229 0.92198 0.94175 0.84205 0.83076 0.75545 0.89329 0.89876 0.90797 0.87175 0.87318 0.91466 0.75173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.95 43.26 27.47 68.60 1.88 45.15 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.54 -30.87 9.66 25.60 0.25 -30.63 16 8 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 9 C -0.01 -0.23 3.81 29.85 0.11 -0.12 16 10 C -0.12 -4.56 4.78 30.59 0.15 -4.41 16 11 C 0.08 2.68 3.21 44.17 0.14 2.82 16 12 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 13 N -0.83 -27.01 8.94 -171.81 -1.54 -28.55 16 14 C 0.53 17.56 7.04 87.65 0.62 18.18 16 15 O -0.57 -22.49 15.92 -3.04 -0.05 -22.54 16 16 N -0.70 -18.65 4.73 -442.09 -2.09 -20.74 16 17 C 0.11 2.48 2.54 45.09 0.11 2.60 16 18 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 19 C 0.06 1.17 6.45 72.01 0.46 1.63 16 20 O -0.39 -7.69 10.67 -148.98 -1.59 -9.28 16 21 C 0.05 0.63 6.84 72.01 0.49 1.12 16 22 C -0.19 -2.12 5.58 30.68 0.17 -1.95 16 23 C 0.10 1.51 3.28 30.72 0.10 1.61 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 O -0.58 -11.10 13.13 -148.98 -1.96 -13.06 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.03 1.13 5.92 -2.38 -0.01 1.12 16 28 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 29 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.34 11.73 8.58 -89.69 -0.77 10.96 16 32 H 0.35 10.87 7.55 -89.69 -0.68 10.20 16 33 H 0.41 9.87 7.08 -92.71 -0.66 9.21 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 1.01 6.73 -2.38 -0.02 0.99 16 40 H 0.40 3.87 9.09 -74.05 -0.67 3.20 16 Total: -1.00 -76.47 323.90 -3.71 -80.18 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -1.75 Total: 37.00 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 3.07 Total: -8.47 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -3.33 Total: -108.98 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -3.59 Total: -44.89 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Total: -76.47 -3.71 -80.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710959332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.957 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds