Wall clock time and date at job start Mon Mar 30 2020 04:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48504 * 109.47090 * 239.99927 * 3 2 1 5 5 H 1.48506 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47646 * 119.99773 * 3 2 1 7 7 C 1.37882 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00371 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47296 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46960 * 304.99655 * 11 10 9 13 13 N 1.46898 * 109.47074 * 65.00012 * 11 10 9 14 14 C 1.50697 * 109.46935 * 185.00305 * 11 10 9 15 15 O 1.21280 * 119.99780 * 259.99762 * 14 11 10 16 16 N 1.34775 * 120.00258 * 80.00049 * 14 11 10 17 17 C 1.46498 * 119.99834 * 179.97438 * 16 14 11 18 18 H 1.08995 * 109.57881 * 34.84282 * 17 16 14 19 19 C 1.53094 * 109.52521 * 274.68212 * 17 16 14 20 20 O 1.42902 * 109.42545 * 182.49341 * 19 17 16 21 21 C 1.42904 * 114.09961 * 61.14161 * 20 19 17 22 22 C 1.53093 * 109.42351 * 298.86177 * 21 20 19 23 23 C 1.53176 * 109.16348 * 57.60111 * 22 21 20 24 24 H 1.08998 * 109.54371 * 62.97778 * 23 22 21 25 25 O 1.42902 * 109.54230 * 183.15202 * 23 22 21 26 26 H 0.96998 * 119.99908 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47250 * 59.99789 * 9 7 2 28 28 H 1.09007 * 109.47186 * 300.00009 * 9 7 2 29 29 H 1.09008 * 109.46820 * 59.99969 * 10 9 7 30 30 H 1.08997 * 109.47249 * 300.00166 * 10 9 7 31 31 H 1.00898 * 110.99970 * 60.00040 * 13 11 10 32 32 H 1.00897 * 110.99770 * 183.95254 * 13 11 10 33 33 H 0.96996 * 120.00292 * 0.02562 * 16 14 11 34 34 H 1.09000 * 109.47974 * 302.47296 * 19 17 16 35 35 H 1.09001 * 109.47833 * 62.50635 * 19 17 16 36 36 H 1.09002 * 109.48241 * 178.87096 * 21 20 19 37 37 H 1.08999 * 109.47648 * 58.84690 * 21 20 19 38 38 H 1.09004 * 109.52115 * 177.50898 * 22 21 20 39 39 H 1.09001 * 109.52113 * 297.69780 * 22 21 20 40 40 H 0.96702 * 114.00281 * 300.00019 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0047 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7884 -5.0068 0.8433 13 7 0.7281 -5.1189 -1.2537 14 6 2.4549 -6.1298 0.1251 15 8 2.7864 -6.7536 -0.8607 16 7 2.9582 -6.4585 1.3314 17 6 3.9053 -7.5697 1.4518 18 1 4.5389 -7.6072 0.5657 19 6 3.1352 -8.8860 1.5862 20 8 4.0596 -9.9616 1.7618 21 6 4.8685 -9.8502 2.9345 22 6 5.7082 -8.5726 2.8543 23 6 4.7762 -7.3675 2.6956 24 1 4.1408 -7.2794 3.5769 25 8 5.5540 -6.1780 2.5463 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6044 0.8906 30 1 2.8720 -3.6044 -0.8894 31 1 1.3477 -5.1034 -2.0500 32 1 0.1638 -5.9552 -1.2509 33 1 2.6928 -5.9599 2.1199 34 1 2.4718 -8.8325 2.4494 35 1 2.5463 -9.0563 0.6849 36 1 5.5283 -10.7150 3.0045 37 1 4.2279 -9.8094 3.8154 38 1 6.2930 -8.4631 3.7677 39 1 6.3782 -8.6304 1.9965 40 1 6.1354 -5.9915 3.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710976729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:10 Heat of formation + Delta-G solvation = -147.793513 kcal Electronic energy + Delta-G solvation = -21516.627160 eV Core-core repulsion = 18137.632710 eV Total energy + Delta-G solvation = -3378.994450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50718 -39.15634 -36.97787 -35.27139 -34.61202 -32.77152 -32.05921 -30.23132 -29.94985 -26.36493 -24.90936 -24.30182 -22.95233 -20.94886 -20.59748 -19.70047 -17.84637 -17.30192 -16.89442 -16.53819 -16.17850 -15.73696 -15.42516 -15.14015 -14.51183 -14.33122 -14.19040 -14.01847 -13.45095 -13.38268 -13.24424 -12.74898 -12.28357 -11.99681 -11.89919 -11.51282 -11.37750 -10.95806 -10.85484 -10.65561 -10.55173 -10.39287 -10.25286 -10.06933 -9.75858 -9.34256 -9.05041 -8.97499 -8.33123 -8.18246 -5.91457 -3.93372 2.76423 3.04035 3.37890 3.42139 3.45008 3.58671 3.72573 4.27000 4.37500 4.47840 4.52308 4.63920 4.79592 4.90236 5.01071 5.08875 5.19155 5.23563 5.30811 5.43905 5.50729 5.55185 5.58719 5.80796 5.87013 6.35062 6.49588 6.70246 6.78861 7.12668 7.30417 7.38456 7.59739 7.78538 7.82110 7.98966 8.15793 8.31775 8.51514 9.14501 9.69525 11.19462 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.003836 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.925417 B = 7297.673800 C = 8065.907376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.080 3.920 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.485 3.515 15 O -0.552 6.552 16 N -0.717 5.717 17 C 0.118 3.882 18 H 0.101 0.899 19 C 0.056 3.944 20 O -0.375 6.375 21 C 0.059 3.941 22 C -0.187 4.187 23 C 0.096 3.904 24 H 0.062 0.938 25 O -0.552 6.552 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.348 0.652 32 H 0.333 0.667 33 H 0.404 0.596 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -19.278 9.584 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.036 4.036 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.271 3.729 15 O -0.429 6.429 16 N -0.370 5.370 17 C 0.012 3.988 18 H 0.119 0.881 19 C -0.022 4.022 20 O -0.292 6.292 21 C -0.018 4.018 22 C -0.226 4.226 23 C 0.036 3.964 24 H 0.080 0.920 25 O -0.357 6.357 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.239 0.761 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.751 -19.043 8.354 22.192 hybrid contribution 1.329 0.471 1.117 1.799 sum 9.081 -18.571 9.472 22.739 Atomic orbital electron populations 1.69967 1.05942 1.26491 1.50884 1.24990 0.94805 0.99029 0.95505 0.86708 0.79598 0.83411 0.78537 1.20315 1.21353 1.20382 1.21257 0.92902 0.91344 1.50551 0.93018 1.19012 0.93545 0.89840 0.98143 1.21655 0.98801 0.92039 1.00834 1.21835 0.93437 0.93266 0.95065 0.88453 1.59004 1.26924 1.44212 1.03300 1.22823 0.82132 0.85519 0.82383 1.90652 1.60925 1.54314 1.37023 1.45980 1.46163 1.34154 1.10708 1.21554 0.90921 0.87168 0.99146 0.88100 1.23014 0.91153 0.85300 1.02758 1.88008 1.52209 1.44708 1.44316 1.22598 0.93375 0.97698 0.88123 1.22981 0.99800 0.95680 1.04098 1.22077 0.92126 0.85064 0.97105 0.92013 1.86666 1.59316 1.42569 1.47188 0.93071 0.94693 0.96920 0.92686 0.92871 0.83782 0.85504 0.76100 0.92626 0.87698 0.88246 0.92799 0.89995 0.89704 0.77340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 10 C -0.09 -1.97 4.78 -26.73 -0.13 -2.09 16 11 C 0.08 1.35 3.15 -68.87 -0.22 1.14 16 12 H 0.10 1.53 8.14 -51.92 -0.42 1.10 16 13 N -0.81 -13.75 8.44 -5.65 -0.05 -13.80 16 14 C 0.49 7.76 7.04 -10.99 -0.08 7.68 16 15 O -0.55 -10.32 15.91 5.56 0.09 -10.23 16 16 N -0.72 -9.19 5.01 -53.67 -0.27 -9.46 16 17 C 0.12 1.40 2.33 -67.79 -0.16 1.24 16 18 H 0.10 1.52 7.58 -51.93 -0.39 1.12 16 19 C 0.06 0.59 6.42 37.21 0.24 0.83 16 20 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 21 C 0.06 0.42 6.84 37.21 0.25 0.68 16 22 C -0.19 -1.32 5.76 -26.59 -0.15 -1.48 16 23 C 0.10 0.86 3.06 -26.55 -0.08 0.78 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 O -0.55 -5.76 13.25 -35.23 -0.47 -6.23 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 32 H 0.33 4.88 9.06 -39.29 -0.36 4.52 16 33 H 0.40 4.48 8.61 -40.82 -0.35 4.13 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.38 2.21 9.08 45.56 0.41 2.62 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -34.73 332.61 -6.83 -41.56 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.62 Total: 11.24 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.87 Total: -4.23 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.42 Total: -49.65 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.76 Total: -20.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.73 -6.83 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710976729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.231 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds