Wall clock time and date at job start Mon Mar 30 2020 04:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48504 * 109.47090 * 239.99927 * 3 2 1 5 5 H 1.48506 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47646 * 119.99773 * 3 2 1 7 7 C 1.37882 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00371 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47296 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46960 * 304.99655 * 11 10 9 13 13 N 1.46898 * 109.47074 * 65.00012 * 11 10 9 14 14 C 1.50697 * 109.46935 * 185.00305 * 11 10 9 15 15 O 1.21280 * 119.99780 * 259.99762 * 14 11 10 16 16 N 1.34775 * 120.00258 * 80.00049 * 14 11 10 17 17 C 1.46498 * 119.99834 * 179.97438 * 16 14 11 18 18 H 1.08995 * 109.57881 * 34.84282 * 17 16 14 19 19 C 1.53094 * 109.52521 * 274.68212 * 17 16 14 20 20 O 1.42902 * 109.42545 * 182.49341 * 19 17 16 21 21 C 1.42904 * 114.09961 * 61.14161 * 20 19 17 22 22 C 1.53093 * 109.42351 * 298.86177 * 21 20 19 23 23 C 1.53176 * 109.16348 * 57.60111 * 22 21 20 24 24 H 1.08998 * 109.54371 * 62.97778 * 23 22 21 25 25 O 1.42902 * 109.54230 * 183.15202 * 23 22 21 26 26 H 0.96998 * 119.99908 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47250 * 59.99789 * 9 7 2 28 28 H 1.09007 * 109.47186 * 300.00009 * 9 7 2 29 29 H 1.09008 * 109.46820 * 59.99969 * 10 9 7 30 30 H 1.08997 * 109.47249 * 300.00166 * 10 9 7 31 31 H 1.00898 * 110.99970 * 60.00040 * 13 11 10 32 32 H 1.00897 * 110.99770 * 183.95254 * 13 11 10 33 33 H 0.96996 * 120.00292 * 0.02562 * 16 14 11 34 34 H 1.09000 * 109.47974 * 302.47296 * 19 17 16 35 35 H 1.09001 * 109.47833 * 62.50635 * 19 17 16 36 36 H 1.09002 * 109.48241 * 178.87096 * 21 20 19 37 37 H 1.08999 * 109.47648 * 58.84690 * 21 20 19 38 38 H 1.09004 * 109.52115 * 177.50898 * 22 21 20 39 39 H 1.09001 * 109.52113 * 297.69780 * 22 21 20 40 40 H 0.96702 * 114.00281 * 300.00019 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0047 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7884 -5.0068 0.8433 13 7 0.7281 -5.1189 -1.2537 14 6 2.4549 -6.1298 0.1251 15 8 2.7864 -6.7536 -0.8607 16 7 2.9582 -6.4585 1.3314 17 6 3.9053 -7.5697 1.4518 18 1 4.5389 -7.6072 0.5657 19 6 3.1352 -8.8860 1.5862 20 8 4.0596 -9.9616 1.7618 21 6 4.8685 -9.8502 2.9345 22 6 5.7082 -8.5726 2.8543 23 6 4.7762 -7.3675 2.6956 24 1 4.1408 -7.2794 3.5769 25 8 5.5540 -6.1780 2.5463 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6044 0.8906 30 1 2.8720 -3.6044 -0.8894 31 1 1.3477 -5.1034 -2.0500 32 1 0.1638 -5.9552 -1.2509 33 1 2.6928 -5.9599 2.1199 34 1 2.4718 -8.8325 2.4494 35 1 2.5463 -9.0563 0.6849 36 1 5.5283 -10.7150 3.0045 37 1 4.2279 -9.8094 3.8154 38 1 6.2930 -8.4631 3.7677 39 1 6.3782 -8.6304 1.9965 40 1 6.1354 -5.9915 3.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710976729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:09 Heat of formation + Delta-G solvation = -178.762995 kcal Electronic energy + Delta-G solvation = -21517.970098 eV Core-core repulsion = 18137.632710 eV Total energy + Delta-G solvation = -3380.337387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51642 -40.19837 -37.72651 -36.84122 -35.73987 -34.80943 -32.72148 -31.93244 -31.05794 -28.07030 -25.83351 -25.54876 -24.13095 -22.28665 -21.80645 -21.01201 -18.77296 -18.50413 -18.04598 -17.97396 -17.30003 -16.91343 -16.61092 -16.40702 -16.02967 -15.52834 -15.32685 -14.96636 -14.89851 -14.28596 -14.12324 -14.00632 -13.83210 -13.60645 -13.41619 -12.77496 -12.58172 -12.52730 -12.26732 -12.03612 -11.80578 -11.72270 -11.62819 -11.27131 -11.07154 -11.02730 -10.90250 -10.47974 -10.10331 -9.63235 -8.13261 -6.23537 1.41670 1.44942 1.46661 1.52905 2.00383 2.45242 2.85099 3.03083 3.19482 3.53733 3.59223 3.71799 3.77164 3.91963 3.94566 4.10363 4.11029 4.31892 4.44203 4.47887 4.61417 4.65091 4.75693 4.78428 4.90575 4.94388 5.11083 5.24846 5.31755 5.57300 5.84865 5.98981 6.06584 6.10853 6.31405 6.41006 6.53185 6.82125 6.94563 7.10889 7.44342 8.97738 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.003836 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.925417 B = 7297.673800 C = 8065.907376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.041 3.959 10 C -0.081 4.081 11 C 0.088 3.912 12 H 0.115 0.885 13 N -0.818 5.818 14 C 0.490 3.510 15 O -0.582 6.582 16 N -0.701 5.701 17 C 0.115 3.885 18 H 0.062 0.938 19 C 0.064 3.936 20 O -0.398 6.398 21 C 0.052 3.948 22 C -0.179 4.179 23 C 0.098 3.902 24 H 0.089 0.911 25 O -0.580 6.580 26 H 0.262 0.738 27 H 0.006 0.994 28 H -0.004 1.004 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.344 0.656 32 H 0.347 0.653 33 H 0.415 0.585 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.432 -19.599 11.691 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.119 4.119 11 C -0.028 4.028 12 H 0.132 0.868 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.462 6.462 16 N -0.354 5.354 17 C 0.009 3.991 18 H 0.080 0.920 19 C -0.015 4.015 20 O -0.316 6.316 21 C -0.024 4.024 22 C -0.218 4.218 23 C 0.039 3.961 24 H 0.107 0.893 25 O -0.389 6.389 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.015 0.985 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.866 -19.382 10.516 23.767 hybrid contribution 1.009 0.533 0.488 1.241 sum 9.875 -18.849 11.004 23.956 Atomic orbital electron populations 1.70095 1.07587 1.27603 1.51637 1.25893 0.95717 1.02982 0.94925 0.85593 0.78348 0.78603 0.79026 1.19751 1.20789 1.19030 1.21703 0.93294 0.92841 1.50570 0.92838 1.18819 0.93804 0.91194 0.95846 1.21373 0.97690 0.92299 1.00552 1.21632 0.93633 0.91813 0.95712 0.86758 1.58982 1.27168 1.45297 1.03222 1.22459 0.81907 0.85140 0.82949 1.90645 1.61882 1.55380 1.38282 1.45844 1.45361 1.34178 1.10039 1.21655 0.90766 0.87378 0.99301 0.91993 1.22846 0.91197 0.84573 1.02854 1.87982 1.52726 1.44556 1.46288 1.22886 0.93610 0.98374 0.87564 1.22935 0.99294 0.94724 1.04812 1.22124 0.92372 0.85509 0.96087 0.89306 1.86611 1.60095 1.43206 1.48943 0.92884 0.97573 0.98516 0.91658 0.94380 0.84235 0.83927 0.74764 0.90138 0.89918 0.86627 0.90579 0.86763 0.91705 0.75078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 8 H 0.05 2.99 7.74 -2.92 -0.02 2.97 16 9 C 0.04 2.14 4.86 29.85 0.15 2.28 16 10 C -0.08 -3.36 4.78 30.59 0.15 -3.21 16 11 C 0.09 2.96 3.15 44.17 0.14 3.10 16 12 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 13 N -0.82 -28.21 8.44 -171.80 -1.45 -29.66 16 14 C 0.49 15.58 7.04 87.66 0.62 16.20 16 15 O -0.58 -22.19 15.91 -3.03 -0.05 -22.23 16 16 N -0.70 -17.28 5.01 -442.11 -2.21 -19.49 16 17 C 0.11 2.63 2.33 45.08 0.11 2.74 16 18 H 0.06 1.92 7.58 -2.39 -0.02 1.91 16 19 C 0.06 1.28 6.42 72.01 0.46 1.74 16 20 O -0.40 -8.01 10.77 -148.98 -1.60 -9.62 16 21 C 0.05 0.60 6.84 72.01 0.49 1.09 16 22 C -0.18 -2.08 5.76 30.68 0.18 -1.90 16 23 C 0.10 1.53 3.06 30.71 0.09 1.63 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 25 O -0.58 -11.00 13.25 -148.98 -1.97 -12.98 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 28 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 29 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.34 12.34 8.58 -89.70 -0.77 11.57 16 32 H 0.35 10.16 9.06 -89.70 -0.81 9.35 16 33 H 0.42 8.37 8.61 -92.71 -0.80 7.57 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.40 3.65 9.08 -74.06 -0.67 2.98 16 Total: -1.00 -76.15 332.61 -3.88 -80.03 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -1.98 Total: 30.74 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 3.07 Total: -6.97 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.38 Total: -105.80 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -3.63 Total: -44.83 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.15 -3.88 -80.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710976729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.734 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds