Wall clock time and date at job start Mon Mar 30 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99393 * 2 1 4 4 C 1.50704 * 109.47247 * 270.00046 * 3 2 1 5 5 H 1.08003 * 119.99531 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00240 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99885 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00205 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46809 * 59.99746 * 8 6 4 10 10 H 1.48496 * 109.47305 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46967 * 299.99995 * 8 6 4 12 12 C 1.34771 * 120.00252 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99864 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00241 * 359.97438 * 12 2 1 15 15 N 1.46899 * 109.47180 * 180.02562 * 14 12 2 16 16 C 1.46847 * 110.99862 * 66.05223 * 15 14 12 17 17 C 1.53044 * 109.51335 * 174.15436 * 16 15 14 18 18 C 1.53119 * 109.27589 * 59.18419 * 17 16 15 19 19 C 1.53120 * 109.16202 * 302.34077 * 18 17 16 20 20 H 1.09004 * 109.50202 * 297.68149 * 19 18 17 21 21 C 1.53001 * 109.50234 * 177.59979 * 19 18 17 22 22 F 1.39891 * 109.47087 * 65.00181 * 21 19 18 23 23 C 1.46847 * 110.99299 * 301.84381 * 15 14 12 24 24 H 1.08998 * 109.46778 * 269.99685 * 1 2 3 25 25 H 1.08997 * 109.47432 * 30.00514 * 1 2 3 26 26 H 1.09002 * 109.46778 * 150.00323 * 1 2 3 27 27 H 1.08993 * 109.47449 * 29.99842 * 3 2 1 28 28 H 1.08999 * 109.47275 * 149.99925 * 3 2 1 29 29 H 0.96996 * 120.00106 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46936 * 60.00455 * 14 12 2 31 31 H 1.08996 * 109.47438 * 300.00895 * 14 12 2 32 32 H 1.09002 * 109.46448 * 54.14158 * 16 15 14 33 33 H 1.08994 * 109.45958 * 294.16523 * 16 15 14 34 34 H 1.09000 * 109.49745 * 179.12223 * 17 16 15 35 35 H 1.08996 * 109.50070 * 299.23917 * 17 16 15 36 36 H 1.08993 * 109.52284 * 62.25342 * 18 17 16 37 37 H 1.09003 * 109.51690 * 182.37761 * 18 17 16 38 38 H 1.09001 * 109.46661 * 185.00458 * 21 19 18 39 39 H 1.09003 * 109.46994 * 305.00259 * 21 19 18 40 40 H 1.09005 * 109.46836 * 65.83946 * 23 15 14 41 41 H 1.08995 * 109.45748 * 305.85482 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1266 2.8776 -1.6728 7 7 3.5539 3.6178 -0.6732 8 14 3.4385 3.4166 -3.4340 9 1 2.1412 3.5943 -4.1343 10 1 4.1808 4.7027 -3.4340 11 1 4.2410 2.3814 -4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0001 14 6 1.3856 -2.4723 -0.0005 15 7 2.3403 -3.5887 -0.0005 16 6 3.1052 -3.6270 1.2524 17 6 3.9814 -4.8815 1.2782 18 6 4.9324 -4.8587 0.0783 19 6 4.1120 -4.7697 -1.2115 20 1 3.4825 -5.6548 -1.3042 21 6 5.0561 -4.6860 -2.4126 22 9 5.7829 -5.8766 -2.5181 23 6 3.2319 -3.5185 -1.1652 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1386 0.5138 29 1 4.0306 4.4437 -0.8504 30 1 0.7586 -2.5299 -0.8904 31 1 0.7592 -2.5302 0.8896 32 1 2.4171 -3.6471 2.0976 33 1 3.7368 -2.7413 1.3194 34 1 4.5607 -4.9017 2.2014 35 1 3.3495 -5.7679 1.2250 36 1 5.5908 -3.9932 0.1518 37 1 5.5292 -5.7707 0.0693 38 1 4.4745 -4.5334 -3.3218 39 1 5.7438 -3.8513 -2.2767 40 1 3.8631 -2.6333 -1.0866 41 1 2.6358 -3.4599 -2.0758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711420492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:30 Heat of formation + Delta-G solvation = -88.812798 kcal Electronic energy + Delta-G solvation = -22064.770234 eV Core-core repulsion = 18700.706169 eV Total energy + Delta-G solvation = -3364.064065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.56066 -39.96665 -37.86878 -34.93318 -33.68094 -32.63420 -31.64341 -28.56155 -26.97891 -26.03684 -25.58713 -23.44544 -22.35573 -21.54269 -19.73594 -18.52099 -16.60332 -16.47378 -16.08096 -15.91793 -15.80502 -15.16212 -14.91631 -14.60403 -14.51746 -14.17288 -13.65624 -13.35025 -13.29483 -12.63848 -12.51987 -12.21323 -12.19819 -11.79924 -11.53257 -11.46540 -11.25757 -11.10381 -10.94615 -10.69011 -10.62422 -10.54420 -10.25268 -10.21221 -10.13676 -9.73049 -9.60589 -8.48602 -7.75863 -7.69953 -6.09423 -4.14745 3.26804 3.28154 3.32369 3.36225 3.91589 3.99010 4.39924 4.65520 4.70879 4.86147 5.02995 5.12710 5.23854 5.25483 5.30366 5.31830 5.43412 5.56906 5.65459 5.67354 5.72806 5.82355 5.87790 5.91115 5.99237 6.05306 6.15796 6.18699 6.27672 6.37654 6.56585 6.94759 7.13569 7.19956 7.38058 7.47853 7.86222 8.17636 8.34479 8.83315 9.00550 9.50535 10.98587 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.005274 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.612053 B = 5307.735567 C = 6259.470169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.600 5.600 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.472 3.528 13 O -0.541 6.541 14 C 0.034 3.966 15 N -0.514 5.514 16 C 0.039 3.961 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.111 4.111 20 H 0.082 0.918 21 C 0.065 3.935 22 F -0.221 7.221 23 C 0.037 3.963 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -14.962 1.584 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.258 3.742 13 O -0.420 6.420 14 C -0.098 4.098 15 N -0.236 5.236 16 C -0.089 4.089 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.131 4.131 20 H 0.101 0.899 21 C 0.009 3.991 22 F -0.202 7.202 23 C -0.090 4.090 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.486 -15.230 1.605 15.706 hybrid contribution 0.450 1.226 -0.966 1.625 sum -3.037 -14.004 0.639 14.343 Atomic orbital electron populations 1.21658 0.81389 1.02674 1.00506 1.48330 1.06254 1.08124 1.70486 1.19275 0.92517 0.78267 0.97466 1.21362 1.36670 1.06341 0.92191 0.92629 1.24935 0.95333 0.96370 0.97421 1.69919 1.38254 1.14351 1.30813 0.86564 0.78384 0.77875 0.84636 1.20223 1.21119 1.20213 1.21656 0.88699 0.86204 0.77624 1.90550 1.13946 1.86811 1.50688 1.22302 0.95892 0.87408 1.04193 1.62392 1.18408 1.39689 1.03139 1.22273 0.96670 0.98688 0.91233 1.21506 0.97372 0.98191 0.97716 1.21596 0.97709 1.02066 0.93959 1.21716 0.96648 1.00109 0.94587 0.89944 1.22017 0.94139 0.83497 0.99422 1.92728 1.79912 1.50170 1.97436 1.22355 0.95702 0.98090 0.92878 0.93638 0.90733 0.92330 0.95141 0.93965 0.92620 0.88331 0.88498 0.91584 0.91638 0.91696 0.91661 0.91640 0.91811 0.90776 0.90491 0.89487 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.60 -12.21 2.86 -182.96 -0.52 -12.73 16 3 C 0.24 6.27 5.16 -5.19 -0.03 6.24 16 4 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 5 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.47 9.19 7.09 -10.99 -0.08 9.11 16 13 O -0.54 -12.46 11.20 5.55 0.06 -12.40 16 14 C 0.03 0.48 4.41 -4.98 -0.02 0.46 16 15 N -0.51 -7.38 4.86 -236.11 -1.15 -8.53 16 16 C 0.04 0.55 5.10 -3.83 -0.02 0.53 16 17 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 18 C -0.12 -1.46 5.18 -26.61 -0.14 -1.60 16 19 C -0.11 -1.42 2.65 -90.54 -0.24 -1.66 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 21 C 0.06 0.78 6.91 37.16 0.26 1.04 16 22 F -0.22 -2.99 17.09 2.25 0.04 -2.95 16 23 C 0.04 0.56 4.26 -3.83 -0.02 0.54 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 26 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 27 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 31 H 0.10 1.18 8.03 -51.93 -0.42 0.77 16 32 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.07 1.14 6.00 -51.93 -0.31 0.83 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.75 8.00 -51.93 -0.42 0.34 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.60 5.36 -51.93 -0.28 1.32 16 41 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -31.54 326.18 -7.90 -39.44 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.71 Total: -0.35 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.25 Total: 1.65 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.93 Total: -46.87 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.06 Total: -12.40 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.54 -7.90 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711420492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.375 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds