Wall clock time and date at job start Mon Mar 30 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99393 * 2 1 4 4 C 1.50704 * 109.47247 * 270.00046 * 3 2 1 5 5 H 1.08003 * 119.99531 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00240 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99885 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00205 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46809 * 59.99746 * 8 6 4 10 10 H 1.48496 * 109.47305 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46967 * 299.99995 * 8 6 4 12 12 C 1.34771 * 120.00252 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99864 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00241 * 359.97438 * 12 2 1 15 15 N 1.46899 * 109.47180 * 180.02562 * 14 12 2 16 16 C 1.46847 * 110.99862 * 66.05223 * 15 14 12 17 17 C 1.53044 * 109.51335 * 174.15436 * 16 15 14 18 18 C 1.53119 * 109.27589 * 59.18419 * 17 16 15 19 19 C 1.53120 * 109.16202 * 302.34077 * 18 17 16 20 20 H 1.09004 * 109.50202 * 297.68149 * 19 18 17 21 21 C 1.53001 * 109.50234 * 177.59979 * 19 18 17 22 22 F 1.39891 * 109.47087 * 65.00181 * 21 19 18 23 23 C 1.46847 * 110.99299 * 301.84381 * 15 14 12 24 24 H 1.08998 * 109.46778 * 269.99685 * 1 2 3 25 25 H 1.08997 * 109.47432 * 30.00514 * 1 2 3 26 26 H 1.09002 * 109.46778 * 150.00323 * 1 2 3 27 27 H 1.08993 * 109.47449 * 29.99842 * 3 2 1 28 28 H 1.08999 * 109.47275 * 149.99925 * 3 2 1 29 29 H 0.96996 * 120.00106 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46936 * 60.00455 * 14 12 2 31 31 H 1.08996 * 109.47438 * 300.00895 * 14 12 2 32 32 H 1.09002 * 109.46448 * 54.14158 * 16 15 14 33 33 H 1.08994 * 109.45958 * 294.16523 * 16 15 14 34 34 H 1.09000 * 109.49745 * 179.12223 * 17 16 15 35 35 H 1.08996 * 109.50070 * 299.23917 * 17 16 15 36 36 H 1.08993 * 109.52284 * 62.25342 * 18 17 16 37 37 H 1.09003 * 109.51690 * 182.37761 * 18 17 16 38 38 H 1.09001 * 109.46661 * 185.00458 * 21 19 18 39 39 H 1.09003 * 109.46994 * 305.00259 * 21 19 18 40 40 H 1.09005 * 109.46836 * 65.83946 * 23 15 14 41 41 H 1.08995 * 109.45748 * 305.85482 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1266 2.8776 -1.6728 7 7 3.5539 3.6178 -0.6732 8 14 3.4385 3.4166 -3.4340 9 1 2.1412 3.5943 -4.1343 10 1 4.1808 4.7027 -3.4340 11 1 4.2410 2.3814 -4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0001 14 6 1.3856 -2.4723 -0.0005 15 7 2.3403 -3.5887 -0.0005 16 6 3.1052 -3.6270 1.2524 17 6 3.9814 -4.8815 1.2782 18 6 4.9324 -4.8587 0.0783 19 6 4.1120 -4.7697 -1.2115 20 1 3.4825 -5.6548 -1.3042 21 6 5.0561 -4.6860 -2.4126 22 9 5.7829 -5.8766 -2.5181 23 6 3.2319 -3.5185 -1.1652 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1386 0.5138 29 1 4.0306 4.4437 -0.8504 30 1 0.7586 -2.5299 -0.8904 31 1 0.7592 -2.5302 0.8896 32 1 2.4171 -3.6471 2.0976 33 1 3.7368 -2.7413 1.3194 34 1 4.5607 -4.9017 2.2014 35 1 3.3495 -5.7679 1.2250 36 1 5.5908 -3.9932 0.1518 37 1 5.5292 -5.7707 0.0693 38 1 4.4745 -4.5334 -3.3218 39 1 5.7438 -3.8513 -2.2767 40 1 3.8631 -2.6333 -1.0866 41 1 2.6358 -3.4599 -2.0758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711420492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:29 Heat of formation + Delta-G solvation = -109.896833 kcal Electronic energy + Delta-G solvation = -22065.684506 eV Core-core repulsion = 18700.706169 eV Total energy + Delta-G solvation = -3364.978337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.59773 -41.33078 -39.17785 -36.57291 -34.94920 -34.60795 -32.70472 -30.32655 -28.34173 -27.13761 -27.08818 -25.05816 -23.73261 -22.71428 -20.85993 -20.00953 -18.70960 -17.90696 -17.38289 -17.03501 -16.85659 -16.71421 -16.33615 -16.02716 -15.74536 -15.53076 -14.94960 -14.68022 -14.53737 -14.10200 -13.82330 -13.68324 -13.44999 -13.37747 -13.12359 -12.84371 -12.61315 -12.55012 -12.52710 -12.21736 -12.11358 -11.86509 -11.68148 -11.57587 -11.30683 -11.19095 -11.11467 -10.66658 -9.38485 -9.09992 -8.24330 -6.39691 1.34585 1.38155 1.45692 1.81285 2.31326 2.48513 2.84005 3.05007 3.64163 3.66532 3.76351 3.87298 4.04795 4.22020 4.23514 4.30270 4.37625 4.44420 4.57497 4.60739 4.65097 4.74116 4.76209 4.90586 4.92952 4.96409 4.99599 5.01775 5.09150 5.20220 5.21117 5.26443 5.47211 5.56058 5.83493 5.94954 6.02674 6.04407 6.68061 6.80759 7.26848 7.49332 8.82214 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.005274 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.612053 B = 5307.735567 C = 6259.470169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.260 3.740 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.462 3.538 13 O -0.585 6.585 14 C 0.045 3.955 15 N -0.503 5.503 16 C 0.039 3.961 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.104 4.104 20 H 0.096 0.904 21 C 0.065 3.935 22 F -0.227 7.227 23 C 0.040 3.960 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.018 0.982 28 H -0.006 1.006 29 H 0.267 0.733 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 -16.834 0.628 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.138 3.862 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.184 1.184 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.250 3.750 13 O -0.467 6.467 14 C -0.087 4.087 15 N -0.225 5.225 16 C -0.089 4.089 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.123 4.123 20 H 0.114 0.886 21 C 0.009 3.991 22 F -0.208 7.208 23 C -0.088 4.088 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.036 0.964 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.381 -17.129 0.654 17.966 hybrid contribution 1.036 1.798 -0.610 2.163 sum -4.344 -15.331 0.044 15.935 Atomic orbital electron populations 1.21945 0.77892 1.04069 1.02609 1.48371 1.08441 1.06553 1.70833 1.18690 0.90938 0.80716 0.95858 1.21652 1.36710 1.06490 0.93006 0.92852 1.25862 0.94963 0.96476 1.01883 1.70046 1.38957 1.14814 1.33129 0.85492 0.78873 0.77365 0.79253 1.18399 1.20465 1.20273 1.22762 0.88534 0.87489 0.76190 1.90561 1.16325 1.87584 1.52243 1.22478 0.95581 0.83764 1.06838 1.62503 1.18141 1.38835 1.02974 1.22290 0.96778 0.98044 0.91793 1.21493 0.97181 0.97631 0.97886 1.21602 0.97766 1.01530 0.94521 1.21653 0.96497 0.99421 0.94727 0.88620 1.22053 0.94034 0.82877 1.00102 1.92715 1.80133 1.50507 1.97479 1.22263 0.95592 0.97403 0.93524 0.91134 0.91849 0.88419 0.96354 0.98758 0.92445 0.85756 0.85359 0.89874 0.95631 0.90614 0.89979 0.93929 0.90681 0.88998 0.91347 0.93529 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 10.24 127.77 1.31 3.45 16 2 N -0.61 -24.86 2.86 -851.14 -2.43 -27.29 16 3 C 0.26 13.90 5.16 85.63 0.44 14.34 16 4 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 8 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.46 17.95 7.09 87.66 0.62 18.58 16 13 O -0.59 -28.25 11.20 -3.05 -0.03 -28.29 16 14 C 0.04 1.16 4.41 85.56 0.38 1.54 16 15 N -0.50 -13.40 4.86 -900.92 -4.38 -17.78 16 16 C 0.04 1.06 5.10 86.33 0.44 1.50 16 17 C -0.10 -2.34 6.09 30.65 0.19 -2.16 16 18 C -0.12 -2.87 5.18 30.67 0.16 -2.71 16 19 C -0.10 -2.51 2.65 -10.74 -0.03 -2.54 16 20 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 21 C 0.06 1.51 6.91 71.98 0.50 2.01 16 22 F -0.23 -5.85 17.09 44.97 0.77 -5.08 16 23 C 0.04 1.16 4.26 86.33 0.37 1.53 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 26 H 0.10 1.94 6.44 -2.39 -0.02 1.93 16 27 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 28 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.12 2.65 7.40 -2.38 -0.02 2.63 16 31 H 0.13 2.58 8.03 -2.39 -0.02 2.56 16 32 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 33 H 0.03 0.92 6.00 -2.39 -0.01 0.90 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.67 8.00 -2.39 -0.02 1.65 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.78 5.36 -2.38 -0.01 1.76 16 41 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 Total: -1.00 -71.93 326.18 2.31 -69.62 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.00 Total: 12.42 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.07 Total: 5.85 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -6.52 Total: -101.12 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.03 Total: -28.29 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.77 Total: -5.08 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.93 2.31 -69.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711420492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.280 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds