Wall clock time and date at job start Mon Mar 30 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48497 * 109.47067 * 269.99931 * 3 2 1 5 5 H 1.48497 * 109.47269 * 30.00240 * 3 2 1 6 6 H 1.48506 * 109.47186 * 150.00171 * 3 2 1 7 7 C 1.37874 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00622 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47323 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47507 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47328 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47086 * 305.00304 * 12 11 10 14 14 N 1.46898 * 109.47168 * 64.99746 * 12 11 10 15 15 C 1.50693 * 109.47391 * 184.99942 * 12 11 10 16 16 O 1.21283 * 120.00346 * 260.00330 * 15 12 11 17 17 N 1.34784 * 119.99987 * 79.99996 * 15 12 11 18 18 C 1.47018 * 125.64722 * 0.02568 * 17 15 12 19 19 C 1.54320 * 107.27210 * 181.02498 * 18 17 15 20 20 C 1.55159 * 102.94349 * 22.19183 * 19 18 17 21 21 H 1.09004 * 111.00410 * 82.57393 * 20 19 18 22 22 C 1.52998 * 111.00608 * 206.38650 * 20 19 18 23 23 F 1.39892 * 109.47272 * 298.54928 * 22 20 19 24 24 C 1.47421 * 125.64843 * 179.72186 * 17 15 12 25 25 H 0.97002 * 119.99859 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47480 * 60.00202 * 9 7 2 27 27 H 1.09002 * 109.46990 * 299.99301 * 9 7 2 28 28 H 1.09000 * 109.47162 * 59.99479 * 10 9 7 29 29 H 1.09002 * 109.46975 * 300.00160 * 10 9 7 30 30 H 1.09001 * 109.46676 * 59.99745 * 11 10 9 31 31 H 1.08996 * 109.46878 * 300.00301 * 11 10 9 32 32 H 1.00901 * 111.00229 * 296.05161 * 14 12 11 33 33 H 1.00909 * 111.00075 * 60.00351 * 14 12 11 34 34 H 1.09010 * 109.88204 * 300.44210 * 18 17 15 35 35 H 1.09002 * 109.88404 * 61.60670 * 18 17 15 36 36 H 1.08996 * 110.72172 * 140.55457 * 19 18 17 37 37 H 1.08998 * 110.72014 * 263.65340 * 19 18 17 38 38 H 1.09001 * 109.46798 * 58.54904 * 22 20 19 39 39 H 1.09001 * 109.47296 * 178.54124 * 22 20 19 40 40 H 1.09005 * 110.36058 * 274.74476 * 24 17 15 41 41 H 1.08997 * 110.36930 * 37.06604 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4803 -4.9872 -0.0020 12 6 2.4745 -6.1500 -0.0024 13 1 3.1587 -6.0428 -0.8441 14 7 3.2375 -6.1423 1.2528 15 6 1.7252 -7.4515 -0.1267 16 8 1.5128 -8.1256 0.8589 17 7 1.2909 -7.8666 -1.3333 18 6 1.4791 -7.1515 -2.6041 19 6 0.7956 -7.9881 -3.7061 20 6 -0.2268 -8.8420 -2.9104 21 1 -1.1391 -8.2782 -2.7157 22 6 -0.5389 -10.1481 -3.6436 23 9 -1.1090 -9.8596 -4.8881 24 6 0.5541 -9.1157 -1.5983 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8713 -3.6048 0.8890 29 1 2.8726 -3.6040 -0.8909 30 1 0.8540 -5.0447 -0.8923 31 1 0.8532 -5.0450 0.8877 32 1 3.7992 -5.3076 1.3295 33 1 2.6252 -6.2405 2.0489 34 1 1.0171 -6.1658 -2.5467 35 1 2.5429 -7.0527 -2.8199 36 1 0.2853 -7.3419 -4.4202 37 1 1.5211 -8.6240 -4.2134 38 1 0.3823 -10.7127 -3.7881 39 1 -1.2380 -10.7390 -3.0518 40 1 1.2491 -9.9445 -1.7335 41 1 -0.1374 -9.3284 -0.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711454005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:14 Heat of formation + Delta-G solvation = -132.485392 kcal Electronic energy + Delta-G solvation = -21064.941694 eV Core-core repulsion = 17698.983843 eV Total energy + Delta-G solvation = -3365.957850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.53709 -41.31315 -38.83063 -37.38520 -35.29300 -33.60466 -33.00568 -30.59411 -29.55961 -27.85295 -26.08919 -24.57262 -23.44081 -21.82955 -21.56865 -20.20003 -18.61199 -18.47175 -17.75446 -16.81880 -16.65695 -16.56705 -16.49492 -16.19627 -15.67154 -15.64776 -15.09072 -14.73903 -14.48234 -14.31609 -14.06210 -13.87336 -13.56208 -13.49282 -13.04357 -12.92999 -12.58326 -12.43438 -12.42169 -12.33879 -12.04257 -11.67576 -11.53342 -11.49352 -11.44680 -11.27749 -10.81267 -10.56635 -9.79645 -9.66004 -8.20935 -6.32346 1.40417 1.41413 1.50666 1.52653 1.85217 2.40490 3.12677 3.19299 3.44806 3.57265 3.63776 3.67418 3.94008 4.02776 4.12202 4.15572 4.20202 4.33861 4.39076 4.46974 4.52406 4.64286 4.72144 4.75274 4.84563 4.90645 4.97073 5.03151 5.15721 5.21430 5.22987 5.30194 5.50817 5.71084 5.83816 6.00697 6.22727 6.39366 6.46019 6.85505 7.06709 7.37630 8.90749 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.003543 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.792943 B = 7900.303839 C = 8812.297386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.093 4.093 11 C -0.133 4.133 12 C 0.089 3.911 13 H 0.118 0.882 14 N -0.832 5.832 15 C 0.535 3.465 16 O -0.574 6.574 17 N -0.620 5.620 18 C 0.088 3.912 19 C -0.119 4.119 20 C -0.132 4.132 21 H 0.088 0.912 22 C 0.074 3.926 23 F -0.230 7.230 24 C 0.111 3.889 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.016 1.016 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.358 0.642 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -19.592 -8.818 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.173 4.173 12 C -0.026 4.026 13 H 0.136 0.864 14 N -0.364 5.364 15 C 0.324 3.676 16 O -0.452 6.452 17 N -0.354 5.354 18 C -0.034 4.034 19 C -0.156 4.156 20 C -0.151 4.151 21 H 0.106 0.894 22 C 0.019 3.981 23 F -0.211 7.211 24 C -0.011 4.011 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.002 0.998 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.921 -20.465 -8.526 22.361 hybrid contribution -0.751 2.057 0.410 2.228 sum 2.171 -18.408 -8.116 20.234 Atomic orbital electron populations 1.70103 1.07894 1.27730 1.51811 1.25996 0.95723 1.03455 0.94787 0.85457 0.78688 0.78436 0.78540 1.19648 1.21091 1.18592 1.21722 0.93687 0.92260 1.50308 0.91794 1.18998 0.94455 0.93295 0.94557 1.21423 0.97917 0.92366 1.01349 1.22213 0.98373 0.94626 1.02114 1.21326 0.95021 0.89958 0.96294 0.86395 1.58714 1.28133 1.46357 1.03205 1.20521 0.78437 0.87140 0.81458 1.90641 1.58655 1.58226 1.37727 1.48496 1.56299 1.23450 1.07120 1.22369 1.02352 0.96448 0.82198 1.22692 0.97875 0.98696 0.96386 1.22979 0.99441 0.97928 0.94763 0.89377 1.21992 1.00443 0.95792 0.79848 1.92751 1.87367 1.95178 1.45828 1.22250 0.95106 0.86969 0.96783 0.92854 0.98989 0.99782 0.92549 0.91693 0.91332 0.93488 0.82651 0.84138 0.91234 0.89331 0.88934 0.88408 0.88245 0.88829 0.89461 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.48 4.92 30.60 0.15 -3.33 16 11 C -0.13 -4.27 4.83 30.59 0.15 -4.13 16 12 C 0.09 2.44 2.62 44.17 0.12 2.56 16 13 H 0.12 2.78 7.52 -2.39 -0.02 2.76 16 14 N -0.83 -23.11 8.94 -171.82 -1.54 -24.64 16 15 C 0.54 15.73 7.10 87.65 0.62 16.36 16 16 O -0.57 -20.90 16.50 -3.04 -0.05 -20.95 16 17 N -0.62 -13.93 3.32 -811.36 -2.70 -16.63 16 18 C 0.09 1.51 6.18 86.73 0.54 2.05 16 19 C -0.12 -1.51 6.24 31.78 0.20 -1.31 16 20 C -0.13 -1.76 3.43 -9.32 -0.03 -1.80 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 C 0.07 0.74 7.02 71.98 0.51 1.25 16 23 F -0.23 -3.73 17.17 44.97 0.77 -2.96 16 24 C 0.11 1.94 6.38 86.93 0.55 2.50 16 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.06 2.02 6.87 -2.39 -0.02 2.01 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.15 6.61 -2.39 -0.02 2.13 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.36 9.04 7.55 -89.69 -0.68 8.37 16 33 H 0.35 10.19 8.58 -89.69 -0.77 9.42 16 34 H 0.07 1.34 6.69 -2.38 -0.02 1.33 16 35 H 0.09 1.28 7.93 -2.39 -0.02 1.26 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 0.92 8.04 -2.39 -0.02 0.90 16 38 H 0.10 0.60 8.10 -2.39 -0.02 0.58 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.25 8.01 -2.38 -0.02 1.23 16 41 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 Total: -1.00 -71.04 335.33 2.03 -69.02 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.42 Total: 20.91 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 3.64 Total: -13.96 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.95 Total: -97.65 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.77 Total: -2.96 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.04 2.03 -69.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711454005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.467 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds