Wall clock time and date at job start Mon Mar 30 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 O 1.21283 * 120.00117 * 260.00788 * 14 11 10 16 16 N 1.34772 * 119.99971 * 79.99728 * 14 11 10 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47578 * 180.02562 * 17 16 14 19 19 O 1.42960 * 109.47317 * 59.99628 * 18 17 16 20 20 C 1.43095 * 113.77510 * 181.21148 * 19 18 17 21 21 C 1.53257 * 108.94115 * 57.96794 * 20 19 18 22 22 C 1.53264 * 108.84782 * 305.47802 * 21 20 19 23 23 O 1.42971 * 109.46819 * 299.99644 * 18 17 16 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00894 * 110.99558 * 296.04896 * 13 11 10 30 30 H 1.00892 * 110.99957 * 60.00190 * 13 11 10 31 31 H 0.97003 * 120.00400 * 0.02562 * 16 14 11 32 32 H 1.09009 * 109.47041 * 299.99863 * 17 16 14 33 33 H 1.09005 * 109.47453 * 60.00054 * 17 16 14 34 34 H 1.09001 * 109.47416 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.55506 * 298.13062 * 20 19 18 36 36 H 1.08995 * 109.55808 * 177.80977 * 20 19 18 37 37 H 1.09003 * 109.57242 * 185.67169 * 21 20 19 38 38 H 1.08999 * 109.68450 * 65.35116 * 21 20 19 39 39 H 1.09001 * 109.55719 * 294.69183 * 22 21 20 40 40 H 1.08999 * 109.64913 * 174.41575 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2538 14 6 2.4547 -6.1299 0.1250 15 8 2.7862 -6.7537 -0.8608 16 7 2.9579 -6.4586 1.3313 17 6 3.9057 -7.5692 1.4516 18 6 4.3184 -7.7312 2.9160 19 8 3.1612 -8.0041 3.7098 20 6 3.4399 -8.1458 5.1062 21 6 4.1064 -6.8622 5.6132 22 6 5.3356 -6.5670 4.7465 23 8 4.9364 -6.5257 3.3730 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.0232 -4.4009 -1.3300 30 1 1.3475 -5.1034 -2.0500 31 1 2.6926 -5.9599 2.1198 32 1 3.4344 -8.4884 1.1035 33 1 4.7879 -7.3613 0.8460 34 1 5.0232 -8.5578 3.0056 35 1 4.1109 -8.9909 5.2605 36 1 2.5095 -8.3127 5.6489 37 1 4.4144 -6.9957 6.6502 38 1 3.4036 -6.0319 5.5449 39 1 6.0783 -7.3523 4.8872 40 1 5.7626 -5.6055 5.0315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716325008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:57 Heat of formation + Delta-G solvation = -146.961832 kcal Electronic energy + Delta-G solvation = -21409.329396 eV Core-core repulsion = 18030.371011 eV Total energy + Delta-G solvation = -3378.958385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39398 -39.28420 -35.99703 -35.54147 -34.75505 -32.79629 -32.56450 -29.81934 -28.94046 -26.31433 -26.24680 -24.01841 -22.70484 -21.43600 -20.56828 -19.69461 -17.76634 -17.42924 -16.93320 -16.40314 -16.10441 -15.34529 -15.14532 -15.08152 -14.75531 -14.46630 -14.34086 -13.81344 -13.63846 -13.25054 -13.01787 -12.70895 -12.53783 -12.07613 -11.87482 -11.62027 -11.51823 -11.44250 -11.03234 -10.86386 -10.64322 -10.35875 -10.05321 -9.91525 -9.83785 -9.22151 -9.13339 -8.85948 -8.39462 -8.09827 -6.04180 -4.06804 3.04826 3.17418 3.27366 3.30117 3.36485 3.39822 3.43242 4.35554 4.37800 4.43269 4.48614 4.66188 4.82433 4.95473 5.02714 5.20741 5.27666 5.32263 5.34522 5.37499 5.47419 5.64857 5.69996 5.72122 5.87133 6.39081 6.41731 6.61128 6.66619 6.80061 6.95815 7.53308 7.58513 7.68807 7.84079 7.93512 7.99511 8.36763 8.58620 8.99265 9.57706 11.06830 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.004220 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.700214 B = 6632.908772 C = 7650.164135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.544 6.544 16 N -0.721 5.721 17 C 0.141 3.859 18 C 0.236 3.764 19 O -0.386 6.386 20 C 0.057 3.943 21 C -0.195 4.195 22 C 0.057 3.943 23 O -0.384 6.384 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.353 0.647 30 H 0.345 0.655 31 H 0.408 0.592 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -16.449 11.754 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.421 6.421 16 N -0.375 5.375 17 C 0.016 3.984 18 C 0.141 3.859 19 O -0.307 6.307 20 C -0.019 4.019 21 C -0.233 4.233 22 C -0.020 4.020 23 O -0.305 6.305 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.243 0.757 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.378 -17.369 11.120 22.260 hybrid contribution 1.011 1.973 0.690 2.322 sum 9.389 -15.396 11.809 21.556 Atomic orbital electron populations 1.69953 1.06010 1.26696 1.50631 1.25008 0.94855 0.99254 0.95203 0.86589 0.79842 0.83409 0.78147 1.20641 1.21190 1.19898 1.21198 0.93040 0.90920 1.50858 0.92718 1.19106 0.93746 0.91135 0.97327 1.22369 0.99841 0.93930 1.01541 1.21442 0.94670 0.92301 0.95494 0.88618 1.58741 1.18460 1.55834 1.03223 1.20873 0.81061 0.84440 0.82319 1.90622 1.60613 1.53684 1.37182 1.45719 1.46525 1.34786 1.10475 1.21277 0.94295 0.91867 0.90927 1.23687 0.84741 0.86751 0.90770 1.88185 1.33369 1.90882 1.18250 1.22667 1.01559 0.95929 0.81767 1.22810 0.99561 1.00142 1.00765 1.22677 0.95110 1.03129 0.81067 1.88219 1.77670 1.38072 1.26491 0.92937 0.96322 0.96422 0.92739 0.92427 0.83142 0.84205 0.75660 0.89481 0.89488 0.91369 0.92883 0.88092 0.89678 0.89502 0.92907 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 10 C -0.14 -2.82 4.78 -26.74 -0.13 -2.95 16 11 C 0.08 1.38 3.21 -68.86 -0.22 1.16 16 12 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 13 N -0.83 -15.07 8.94 -5.65 -0.05 -15.12 16 14 C 0.53 9.34 7.08 -10.99 -0.08 9.26 16 15 O -0.54 -11.10 16.25 5.55 0.09 -11.01 16 16 N -0.72 -10.57 5.34 -60.29 -0.32 -10.89 16 17 C 0.14 1.73 5.78 -4.04 -0.02 1.71 16 18 C 0.24 2.43 3.41 37.16 0.13 2.55 16 19 O -0.39 -4.14 10.28 -59.03 -0.61 -4.74 16 20 C 0.06 0.43 6.96 37.29 0.26 0.69 16 21 C -0.19 -1.37 6.35 -26.46 -0.17 -1.54 16 22 C 0.06 0.45 6.96 37.29 0.26 0.71 16 23 O -0.38 -4.34 10.28 -59.03 -0.61 -4.95 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.35 6.38 7.55 -39.29 -0.30 6.08 16 30 H 0.34 6.31 8.58 -39.30 -0.34 5.97 16 31 H 0.41 5.72 8.22 -40.82 -0.34 5.38 16 32 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -32.93 332.19 -7.65 -40.58 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.36 Total: 11.57 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.52 Total: -1.33 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.36 Total: -51.69 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.12 Total: -20.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.93 -7.65 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716325008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.377 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds