Wall clock time and date at job start Mon Mar 30 2020 04:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 O 1.21283 * 120.00117 * 260.00788 * 14 11 10 16 16 N 1.34772 * 119.99971 * 79.99728 * 14 11 10 17 17 C 1.46496 * 120.00222 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47578 * 180.02562 * 17 16 14 19 19 O 1.42960 * 109.47317 * 59.99628 * 18 17 16 20 20 C 1.43095 * 113.77510 * 181.21148 * 19 18 17 21 21 C 1.53257 * 108.94115 * 57.96794 * 20 19 18 22 22 C 1.53264 * 108.84782 * 305.47802 * 21 20 19 23 23 O 1.42971 * 109.46819 * 299.99644 * 18 17 16 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.00894 * 110.99558 * 296.04896 * 13 11 10 30 30 H 1.00892 * 110.99957 * 60.00190 * 13 11 10 31 31 H 0.97003 * 120.00400 * 0.02562 * 16 14 11 32 32 H 1.09009 * 109.47041 * 299.99863 * 17 16 14 33 33 H 1.09005 * 109.47453 * 60.00054 * 17 16 14 34 34 H 1.09001 * 109.47416 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.55506 * 298.13062 * 20 19 18 36 36 H 1.08995 * 109.55808 * 177.80977 * 20 19 18 37 37 H 1.09003 * 109.57242 * 185.67169 * 21 20 19 38 38 H 1.08999 * 109.68450 * 65.35116 * 21 20 19 39 39 H 1.09001 * 109.55719 * 294.69183 * 22 21 20 40 40 H 1.08999 * 109.64913 * 174.41575 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7279 -5.1189 -1.2538 14 6 2.4547 -6.1299 0.1250 15 8 2.7862 -6.7537 -0.8608 16 7 2.9579 -6.4586 1.3313 17 6 3.9057 -7.5692 1.4516 18 6 4.3184 -7.7312 2.9160 19 8 3.1612 -8.0041 3.7098 20 6 3.4399 -8.1458 5.1062 21 6 4.1064 -6.8622 5.6132 22 6 5.3356 -6.5670 4.7465 23 8 4.9364 -6.5257 3.3730 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.0232 -4.4009 -1.3300 30 1 1.3475 -5.1034 -2.0500 31 1 2.6926 -5.9599 2.1198 32 1 3.4344 -8.4884 1.1035 33 1 4.7879 -7.3613 0.8460 34 1 5.0232 -8.5578 3.0056 35 1 4.1109 -8.9909 5.2605 36 1 2.5095 -8.3127 5.6489 37 1 4.4144 -6.9957 6.6502 38 1 3.4036 -6.0319 5.5449 39 1 6.0783 -7.3523 4.8872 40 1 5.7626 -5.6055 5.0315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716325008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:56 Heat of formation + Delta-G solvation = -172.775624 kcal Electronic energy + Delta-G solvation = -21410.448766 eV Core-core repulsion = 18030.371011 eV Total energy + Delta-G solvation = -3380.077755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26199 -40.54156 -37.14129 -36.72125 -35.95529 -34.82814 -33.33358 -31.67854 -29.99362 -27.90890 -26.90233 -25.68992 -23.72307 -22.49593 -21.91319 -21.12116 -18.95558 -18.49457 -18.14237 -17.89305 -17.08596 -16.56092 -16.33131 -16.12859 -16.01934 -15.69621 -15.57800 -15.29026 -14.81061 -14.53420 -14.29270 -14.10809 -13.74861 -13.53752 -13.41036 -12.93913 -12.67398 -12.50255 -12.43617 -12.23445 -12.05867 -11.80372 -11.71024 -11.30025 -11.00573 -10.80321 -10.64192 -10.55545 -10.10330 -9.63598 -8.20776 -6.31231 1.40024 1.40436 1.51409 1.62875 2.11437 2.40682 2.53878 2.58976 3.12709 3.71523 3.77023 3.81935 3.83366 3.87656 3.97340 4.13531 4.25170 4.26086 4.45997 4.47217 4.51801 4.60068 4.67783 4.84718 4.88851 4.89187 5.09009 5.15531 5.38128 5.46912 5.65946 5.81000 5.86464 6.07774 6.11934 6.22126 6.49588 6.52704 6.83786 7.22574 7.37714 8.90172 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.004220 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.700214 B = 6632.908772 C = 7650.164135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.105 0.895 13 N -0.828 5.828 14 C 0.527 3.473 15 O -0.573 6.573 16 N -0.709 5.709 17 C 0.135 3.865 18 C 0.241 3.759 19 O -0.409 6.409 20 C 0.050 3.950 21 C -0.190 4.190 22 C 0.048 3.952 23 O -0.411 6.411 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.004 0.996 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.352 0.648 30 H 0.344 0.656 31 H 0.412 0.588 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -16.898 13.037 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.033 4.033 12 H 0.123 0.877 13 N -0.360 5.360 14 C 0.313 3.687 15 O -0.452 6.452 16 N -0.361 5.361 17 C 0.011 3.989 18 C 0.146 3.854 19 O -0.330 6.330 20 C -0.026 4.026 21 C -0.228 4.228 22 C -0.027 4.027 23 O -0.333 6.333 24 H 0.073 0.927 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.248 0.752 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.684 -17.834 12.442 23.804 hybrid contribution 0.603 2.081 0.353 2.195 sum 10.287 -15.753 12.795 22.752 Atomic orbital electron populations 1.70065 1.07508 1.27773 1.51335 1.25867 0.95737 1.02975 0.94681 0.85524 0.78713 0.78877 0.78404 1.20002 1.20556 1.19044 1.21614 0.93322 0.92467 1.50929 0.92798 1.18969 0.94009 0.92008 0.95710 1.22112 0.98767 0.93788 1.01257 1.21366 0.94732 0.91376 0.95862 0.87709 1.58754 1.18362 1.55613 1.03258 1.20678 0.80953 0.84168 0.82862 1.90608 1.61655 1.54708 1.38233 1.45663 1.45994 1.34973 1.09493 1.21473 0.93554 0.90868 0.93014 1.23634 0.85123 0.87351 0.89314 1.88143 1.33953 1.91005 1.19922 1.22908 1.02644 0.96805 0.80198 1.22782 0.98719 0.99258 1.02057 1.22906 0.95964 1.04167 0.79688 1.88171 1.77910 1.38821 1.28358 0.92708 0.98084 0.97790 0.93601 0.91996 0.83255 0.84273 0.75224 0.89187 0.89625 0.88543 0.90791 0.87283 0.87154 0.91420 0.90778 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.53 4.74 29.85 0.14 1.68 16 10 C -0.12 -4.93 4.78 30.59 0.15 -4.79 16 11 C 0.08 2.96 3.21 44.16 0.14 3.10 16 12 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 13 N -0.83 -30.15 8.94 -171.79 -1.54 -31.68 16 14 C 0.53 18.49 7.08 87.66 0.62 19.11 16 15 O -0.57 -23.19 16.25 -3.04 -0.05 -23.24 16 16 N -0.71 -20.28 5.34 -463.06 -2.47 -22.76 16 17 C 0.13 3.16 5.78 86.38 0.50 3.66 16 18 C 0.24 4.52 3.41 71.98 0.25 4.77 16 19 O -0.41 -8.07 10.28 -126.22 -1.30 -9.36 16 20 C 0.05 0.63 6.96 72.07 0.50 1.13 16 21 C -0.19 -2.28 6.35 30.77 0.20 -2.09 16 22 C 0.05 0.67 6.96 72.07 0.50 1.17 16 23 O -0.41 -8.68 10.28 -126.22 -1.30 -9.98 16 24 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.00 0.20 6.87 -2.39 -0.02 0.19 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.35 12.89 7.55 -89.70 -0.68 12.21 16 30 H 0.34 12.67 8.58 -89.70 -0.77 11.90 16 31 H 0.41 11.26 8.22 -92.71 -0.76 10.49 16 32 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.68 332.19 -1.80 -71.48 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -1.15 Total: 36.29 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 3.69 Total: -1.92 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -3.72 Total: -109.29 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -2.65 Total: -42.59 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.68 -1.80 -71.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716325008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.292 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds