Wall clock time and date at job start Mon Mar 30 2020 04:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.62694 * 2 1 4 4 N 1.46497 * 109.47234 * 180.30822 * 3 2 1 5 5 C 1.34781 * 120.00245 * 179.97438 * 4 3 2 6 6 O 1.21275 * 119.99676 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99971 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.47083 * 320.00492 * 7 5 4 9 9 N 1.46898 * 109.47113 * 200.00293 * 7 5 4 10 10 C 1.53000 * 109.46801 * 80.00207 * 7 5 4 11 11 C 1.52997 * 109.47060 * 184.99876 * 10 7 5 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 O 1.43754 * 109.51046 * 120.31552 * 2 1 3 21 21 C 1.44785 * 104.81464 * 95.48982 * 20 2 1 22 22 C 1.54911 * 101.71928 * 36.10541 * 21 20 2 23 23 O 1.43371 * 109.62945 * 239.60520 * 2 1 3 24 24 H 1.08999 * 109.47098 * 60.00043 * 1 2 3 25 25 H 1.09002 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47203 * 300.00304 * 1 2 3 27 27 H 1.09004 * 109.47555 * 60.30744 * 3 2 1 28 28 H 1.09009 * 109.47408 * 300.30459 * 3 2 1 29 29 H 0.97000 * 120.00041 * 359.97438 * 4 3 2 30 30 H 1.00901 * 110.99892 * 176.04953 * 9 7 5 31 31 H 1.00899 * 111.00057 * 300.00501 * 9 7 5 32 32 H 1.09002 * 109.47398 * 305.00045 * 10 7 5 33 33 H 1.09001 * 109.47194 * 65.00225 * 10 7 5 34 34 H 1.09002 * 109.47153 * 300.00319 * 11 10 7 35 35 H 1.08998 * 109.47533 * 59.99948 * 11 10 7 36 36 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 37 37 H 1.08994 * 110.98107 * 277.99850 * 21 20 2 38 38 H 1.08999 * 110.97713 * 154.21230 * 21 20 2 39 39 H 1.09007 * 110.69763 * 206.03628 * 22 21 20 40 40 H 1.09004 * 110.69881 * 82.83393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 3.5089 1.4371 -0.0074 5 6 4.1860 2.6025 -0.0093 6 8 3.5825 3.6544 -0.0043 7 6 5.6930 2.5984 -0.0163 8 1 6.0573 1.8093 0.6416 9 7 6.1885 3.8979 0.4566 10 6 6.1956 2.3481 -1.4396 11 6 7.7201 2.2198 -1.4269 12 6 8.2153 1.9740 -2.8288 13 1 7.5129 1.9156 -3.6471 14 6 9.5651 1.8247 -3.0671 15 7 10.4205 1.8964 -2.0706 16 14 10.1788 1.5193 -4.8047 17 1 10.4586 2.8190 -5.4664 18 1 11.4235 0.7110 -4.7552 19 1 9.1421 0.7853 -5.5739 20 8 2.0102 -0.6839 1.1697 21 6 2.2600 -2.0403 0.7291 22 6 2.7855 -1.8118 -0.7102 23 8 2.0117 -0.6832 -1.1648 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6866 1.9544 0.8927 28 1 1.6776 1.9576 -0.8873 29 1 3.9917 0.5958 -0.0110 30 1 7.1953 3.8988 0.5223 31 1 5.8642 4.6464 -0.1373 32 1 5.7566 1.4272 -1.8233 33 1 5.9065 3.1823 -2.0789 34 1 8.1591 3.1408 -1.0432 35 1 8.0093 1.3857 -0.7876 36 1 11.3702 1.7917 -2.2382 37 1 1.3394 -2.6236 0.7202 38 1 3.0176 -2.5189 1.3497 39 1 2.5949 -2.6857 -1.3332 40 1 3.8485 -1.5704 -0.6984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716376054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:17 Heat of formation + Delta-G solvation = -140.163230 kcal Electronic energy + Delta-G solvation = -21646.825302 eV Core-core repulsion = 18268.161726 eV Total energy + Delta-G solvation = -3378.663576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01634 -39.34299 -35.56297 -35.30937 -34.66461 -32.83693 -32.21238 -29.86318 -28.82793 -27.53441 -25.66445 -23.58407 -23.49949 -21.49256 -20.67841 -19.72230 -17.84707 -17.27312 -16.92769 -16.21727 -15.92793 -15.83797 -14.81394 -14.72626 -14.43495 -14.37966 -14.05493 -13.59733 -13.47073 -13.21556 -13.09880 -12.92016 -12.55399 -12.46774 -12.39474 -12.10763 -11.65324 -11.64400 -11.07526 -10.90676 -10.67532 -10.49984 -10.06871 -9.97039 -9.85474 -9.26680 -9.17826 -8.93405 -8.43169 -8.14922 -6.07833 -4.10784 2.97712 3.07682 3.27119 3.27775 3.34223 3.37528 3.54334 4.22632 4.39592 4.40067 4.57584 4.74088 4.82710 5.04665 5.09168 5.22493 5.28029 5.28637 5.31507 5.40676 5.44088 5.54408 5.62562 5.65847 5.76822 5.80476 6.31909 6.52414 6.56205 6.76499 6.89778 7.46725 7.53519 7.63043 7.74442 7.89517 7.94715 8.32413 8.51456 8.95257 9.54036 11.03095 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.004264 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.455567 B = 6564.595089 C = 7379.249597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.243 3.757 3 C 0.122 3.878 4 N -0.725 5.725 5 C 0.526 3.474 6 O -0.540 6.540 7 C 0.076 3.924 8 H 0.095 0.905 9 N -0.830 5.830 10 C -0.137 4.137 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.366 6.366 21 C 0.014 3.986 22 C 0.016 3.984 23 O -0.371 6.371 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.400 0.600 30 H 0.354 0.646 31 H 0.345 0.655 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 -8.684 5.664 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.166 3.834 3 C -0.003 4.003 4 N -0.378 5.378 5 C 0.313 3.687 6 O -0.416 6.416 7 C -0.039 4.039 8 H 0.113 0.887 9 N -0.362 5.362 10 C -0.177 4.177 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.287 6.287 21 C -0.062 4.062 22 C -0.061 4.061 23 O -0.292 6.292 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.234 0.766 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.194 -7.909 6.388 20.842 hybrid contribution 1.150 -0.844 -1.911 2.385 sum -17.044 -8.753 4.477 19.676 Atomic orbital electron populations 1.22302 0.92756 1.03633 1.03905 1.23684 0.93571 0.90764 0.75379 1.21619 0.81658 0.93512 1.03476 1.45737 1.06092 1.09229 1.76732 1.20884 0.90414 0.83009 0.74379 1.90625 1.70613 1.31188 1.49222 1.21451 0.89683 0.94555 0.98248 0.88676 1.58735 1.16714 1.03272 1.57506 1.22379 1.01058 1.01238 0.93021 1.19105 0.87455 0.97261 0.97477 1.21188 0.92048 1.49356 0.93529 0.92715 1.25010 0.96992 0.95265 0.97033 1.69955 1.02344 1.50123 1.30824 0.86586 0.78299 0.78298 0.84791 1.20612 1.21160 1.19888 1.89328 1.86076 1.21753 1.31509 1.24430 1.01620 0.85001 0.95186 1.24301 0.97045 0.89843 0.94874 1.88976 1.69597 1.41820 1.28846 0.90261 0.91358 0.90196 0.89911 0.89701 0.76554 0.83083 0.84140 0.92576 0.92651 0.96372 0.96350 0.92903 0.90596 0.86994 0.87914 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.19 37.16 0.34 -1.05 16 2 C 0.24 2.59 1.02 -26.73 -0.03 2.56 16 3 C 0.12 1.56 5.09 -4.05 -0.02 1.54 16 4 N -0.72 -10.52 5.34 -60.29 -0.32 -10.84 16 5 C 0.53 9.28 7.08 -10.98 -0.08 9.20 16 6 O -0.54 -11.03 16.25 5.56 0.09 -10.94 16 7 C 0.08 1.35 3.21 -68.86 -0.22 1.13 16 8 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 9 N -0.83 -14.85 8.94 -5.65 -0.05 -14.90 16 10 C -0.14 -2.77 4.78 -26.73 -0.13 -2.90 16 11 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 12 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 O -0.37 -3.89 10.76 -59.04 -0.64 -4.53 16 21 C 0.01 0.10 7.91 38.17 0.30 0.41 16 22 C 0.02 0.13 7.67 38.17 0.29 0.42 16 23 O -0.37 -4.21 10.61 -59.04 -0.63 -4.84 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 29 H 0.40 5.29 7.43 -40.82 -0.30 4.98 16 30 H 0.35 6.28 7.55 -39.29 -0.30 5.99 16 31 H 0.35 6.25 8.58 -39.29 -0.34 5.91 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -32.79 333.24 -7.20 -39.99 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.31 Total: 11.52 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.36 Total: -51.10 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.17 Total: -20.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.79 -7.20 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716376054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.175 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds