Wall clock time and date at job start Mon Mar 30 2020 04:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.62694 * 2 1 4 4 N 1.46497 * 109.47234 * 180.30822 * 3 2 1 5 5 C 1.34781 * 120.00245 * 179.97438 * 4 3 2 6 6 O 1.21275 * 119.99676 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99971 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.47083 * 320.00492 * 7 5 4 9 9 N 1.46898 * 109.47113 * 200.00293 * 7 5 4 10 10 C 1.53000 * 109.46801 * 80.00207 * 7 5 4 11 11 C 1.52997 * 109.47060 * 184.99876 * 10 7 5 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 O 1.43754 * 109.51046 * 120.31552 * 2 1 3 21 21 C 1.44785 * 104.81464 * 95.48982 * 20 2 1 22 22 C 1.54911 * 101.71928 * 36.10541 * 21 20 2 23 23 O 1.43371 * 109.62945 * 239.60520 * 2 1 3 24 24 H 1.08999 * 109.47098 * 60.00043 * 1 2 3 25 25 H 1.09002 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47203 * 300.00304 * 1 2 3 27 27 H 1.09004 * 109.47555 * 60.30744 * 3 2 1 28 28 H 1.09009 * 109.47408 * 300.30459 * 3 2 1 29 29 H 0.97000 * 120.00041 * 359.97438 * 4 3 2 30 30 H 1.00901 * 110.99892 * 176.04953 * 9 7 5 31 31 H 1.00899 * 111.00057 * 300.00501 * 9 7 5 32 32 H 1.09002 * 109.47398 * 305.00045 * 10 7 5 33 33 H 1.09001 * 109.47194 * 65.00225 * 10 7 5 34 34 H 1.09002 * 109.47153 * 300.00319 * 11 10 7 35 35 H 1.08998 * 109.47533 * 59.99948 * 11 10 7 36 36 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 37 37 H 1.08994 * 110.98107 * 277.99850 * 21 20 2 38 38 H 1.08999 * 110.97713 * 154.21230 * 21 20 2 39 39 H 1.09007 * 110.69763 * 206.03628 * 22 21 20 40 40 H 1.09004 * 110.69881 * 82.83393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 3.5089 1.4371 -0.0074 5 6 4.1860 2.6025 -0.0093 6 8 3.5825 3.6544 -0.0043 7 6 5.6930 2.5984 -0.0163 8 1 6.0573 1.8093 0.6416 9 7 6.1885 3.8979 0.4566 10 6 6.1956 2.3481 -1.4396 11 6 7.7201 2.2198 -1.4269 12 6 8.2153 1.9740 -2.8288 13 1 7.5129 1.9156 -3.6471 14 6 9.5651 1.8247 -3.0671 15 7 10.4205 1.8964 -2.0706 16 14 10.1788 1.5193 -4.8047 17 1 10.4586 2.8190 -5.4664 18 1 11.4235 0.7110 -4.7552 19 1 9.1421 0.7853 -5.5739 20 8 2.0102 -0.6839 1.1697 21 6 2.2600 -2.0403 0.7291 22 6 2.7855 -1.8118 -0.7102 23 8 2.0117 -0.6832 -1.1648 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6866 1.9544 0.8927 28 1 1.6776 1.9576 -0.8873 29 1 3.9917 0.5958 -0.0110 30 1 7.1953 3.8988 0.5223 31 1 5.8642 4.6464 -0.1373 32 1 5.7566 1.4272 -1.8233 33 1 5.9065 3.1823 -2.0789 34 1 8.1591 3.1408 -1.0432 35 1 8.0093 1.3857 -0.7876 36 1 11.3702 1.7917 -2.2382 37 1 1.3394 -2.6236 0.7202 38 1 3.0176 -2.5189 1.3497 39 1 2.5949 -2.6857 -1.3332 40 1 3.8485 -1.5704 -0.6984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716376054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:17 Heat of formation + Delta-G solvation = -165.922766 kcal Electronic energy + Delta-G solvation = -21647.942320 eV Core-core repulsion = 18268.161726 eV Total energy + Delta-G solvation = -3379.780593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83287 -40.69282 -37.16095 -36.07872 -35.88246 -34.84201 -33.07086 -31.69676 -29.48180 -28.85443 -27.20810 -25.18634 -24.18990 -22.45046 -22.32120 -21.12180 -19.05841 -18.40129 -18.02303 -17.90457 -16.90701 -16.77379 -16.47750 -16.05023 -15.91548 -15.64984 -15.11765 -14.83790 -14.68932 -14.37433 -14.23497 -13.97350 -13.83517 -13.58828 -13.41522 -13.20800 -13.06611 -12.95171 -12.69144 -12.51069 -12.27876 -11.82758 -11.73878 -11.31040 -11.15129 -10.94848 -10.64732 -10.56188 -10.18877 -9.66269 -8.21490 -6.31899 1.39797 1.40379 1.50982 1.57327 2.04878 2.37647 2.40156 2.77349 3.12156 3.54217 3.69168 3.73011 3.74985 3.96497 4.09254 4.09920 4.20014 4.22316 4.36025 4.54292 4.57302 4.64358 4.70701 4.73961 4.81497 4.83454 4.95694 5.06724 5.12484 5.34101 5.45923 5.64465 5.80033 6.04206 6.04522 6.21087 6.43606 6.47320 6.83084 7.15837 7.37205 8.89336 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019974 B = 0.004264 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.455567 B = 6564.595089 C = 7379.249597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.246 3.754 3 C 0.116 3.884 4 N -0.711 5.711 5 C 0.526 3.474 6 O -0.571 6.571 7 C 0.082 3.918 8 H 0.108 0.892 9 N -0.829 5.829 10 C -0.120 4.120 11 C 0.031 3.969 12 C -0.545 4.545 13 H 0.054 0.946 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.266 1.266 20 O -0.384 6.384 21 C 0.014 3.986 22 C 0.007 3.993 23 O -0.391 6.391 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.407 0.593 30 H 0.353 0.647 31 H 0.344 0.656 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.004 0.996 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.374 -10.066 5.229 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.169 3.831 3 C -0.008 4.008 4 N -0.364 5.364 5 C 0.313 3.687 6 O -0.450 6.450 7 C -0.033 4.033 8 H 0.126 0.874 9 N -0.360 5.360 10 C -0.160 4.160 11 C -0.007 4.007 12 C -0.583 4.583 13 H 0.072 0.928 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.784 3.216 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.190 1.190 20 O -0.305 6.305 21 C -0.062 4.062 22 C -0.069 4.069 23 O -0.313 6.313 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.243 0.757 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.075 -9.330 5.956 22.054 hybrid contribution 1.425 -0.458 -1.746 2.300 sum -17.649 -9.788 4.210 20.616 Atomic orbital electron populations 1.22288 0.90842 1.04648 1.04411 1.23657 0.94718 0.89283 0.75458 1.21799 0.80243 0.95630 1.03136 1.45664 1.07088 1.08588 1.75028 1.20758 0.90172 0.83389 0.74383 1.90612 1.71014 1.32366 1.50969 1.21381 0.90207 0.94883 0.96826 0.87445 1.58748 1.16667 1.03307 1.57312 1.22127 0.98117 1.01124 0.94605 1.18967 0.90156 0.95752 0.95794 1.21603 0.92520 1.49365 0.94830 0.92816 1.25852 0.97243 0.94948 1.01139 1.70063 1.02695 1.50907 1.32946 0.85540 0.77896 0.78339 0.79839 1.20126 1.20548 1.19016 1.89304 1.86272 1.23381 1.31576 1.24654 1.03075 0.83837 0.94611 1.24515 0.96507 0.89768 0.96067 1.88960 1.70058 1.42799 1.29474 0.89994 0.90062 0.89498 0.90043 0.90277 0.75703 0.83141 0.84271 0.91880 0.93683 0.97821 0.97867 0.92700 0.88676 0.85305 0.85807 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.19 71.98 0.66 -1.75 16 2 C 0.25 4.89 1.02 30.60 0.03 4.92 16 3 C 0.12 2.89 5.09 86.38 0.44 3.33 16 4 N -0.71 -20.11 5.34 -463.05 -2.47 -22.59 16 5 C 0.53 18.32 7.08 87.66 0.62 18.94 16 6 O -0.57 -23.23 16.25 -3.01 -0.05 -23.28 16 7 C 0.08 2.90 3.21 44.17 0.14 3.04 16 8 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 9 N -0.83 -29.62 8.94 -171.80 -1.54 -31.16 16 10 C -0.12 -4.82 4.78 30.59 0.15 -4.67 16 11 C 0.03 1.51 4.74 29.85 0.14 1.65 16 12 C -0.55 -30.13 9.11 25.60 0.23 -29.89 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.01 0.38 5.46 84.65 0.46 0.84 16 15 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 16 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 O -0.38 -7.48 10.76 -126.22 -1.36 -8.84 16 21 C 0.01 0.17 7.91 72.64 0.57 0.74 16 22 C 0.01 0.11 7.67 72.64 0.56 0.66 16 23 O -0.39 -8.29 10.61 -126.22 -1.34 -9.62 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.41 10.34 7.43 -92.71 -0.69 9.65 16 30 H 0.35 12.65 7.55 -89.69 -0.68 11.97 16 31 H 0.34 12.52 8.58 -89.69 -0.77 11.75 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.00 0.18 6.87 -2.39 -0.02 0.17 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 1.19 7.76 -2.38 -0.02 1.17 16 Total: -1.00 -68.97 333.24 -1.51 -70.48 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -1.08 Total: 35.79 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.01 Total: -2.19 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -3.72 Total: -107.74 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -2.75 Total: -41.75 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.97 -1.51 -70.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716376054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.446 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds