Wall clock time and date at job start Mon Mar 30 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9 13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9 14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9 15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10 16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10 17 17 C 1.46496 * 119.99982 * 180.02562 * 16 14 11 18 18 C 1.53001 * 109.47008 * 180.02562 * 17 16 14 19 19 C 1.52995 * 113.00114 * 48.17156 * 18 17 16 20 20 O 1.42899 * 109.47395 * 180.02562 * 19 18 17 21 21 C 1.54041 * 113.81498 * 276.18947 * 18 17 16 22 22 O 1.44176 * 85.51687 * 223.19593 * 21 18 17 23 23 C 1.44177 * 93.34410 * 24.18967 * 22 21 18 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.00910 * 110.99485 * 296.04674 * 13 11 10 30 30 H 1.00897 * 111.00222 * 59.99157 * 13 11 10 31 31 H 0.97006 * 119.99721 * 0.02562 * 16 14 11 32 32 H 1.08998 * 109.47490 * 299.99876 * 17 16 14 33 33 H 1.08997 * 109.47684 * 60.00339 * 17 16 14 34 34 H 1.08999 * 109.47331 * 300.00152 * 19 18 17 35 35 H 1.09003 * 109.47312 * 60.00172 * 19 18 17 36 36 H 0.96701 * 114.00474 * 179.97438 * 20 19 18 37 37 H 1.09003 * 113.86167 * 337.33786 * 21 18 17 38 38 H 1.08992 * 113.86642 * 109.04684 * 21 18 17 39 39 H 1.08993 * 113.86935 * 221.66229 * 23 22 21 40 40 H 1.09002 * 113.86498 * 89.95223 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 1 0.7920 -5.0090 0.8377 13 7 0.7223 -5.1156 -1.2593 14 6 2.4552 -6.1301 0.1090 15 8 2.7823 -6.7514 -0.8799 16 7 2.9640 -6.4620 1.3121 17 6 3.9124 -7.5728 1.4252 18 6 4.3317 -7.7386 2.8873 19 6 3.1445 -7.7490 3.8522 20 8 3.6198 -7.9063 5.1906 21 6 5.4769 -6.8017 3.3159 22 8 6.0206 -7.9576 3.9845 23 6 5.3333 -8.8853 3.1210 24 1 -0.4851 0.8401 0.0004 25 1 0.6283 -2.5592 0.8921 26 1 0.6202 -2.5546 -0.8878 27 1 2.8677 -3.6020 -0.9008 28 1 2.8758 -3.6067 0.8792 29 1 0.0171 -4.3973 -1.3305 30 1 1.3382 -5.0980 -2.0583 31 1 2.7022 -5.9653 2.1032 32 1 3.4397 -8.4911 1.0769 33 1 4.7918 -7.3633 0.8162 34 1 2.6000 -6.8084 3.7686 35 1 2.4805 -8.5766 3.6025 36 1 2.9196 -7.9212 5.8575 37 1 6.0876 -6.4439 2.4870 38 1 5.1659 -6.0063 3.9931 39 1 4.9084 -9.7423 3.6435 40 1 5.9001 -9.1636 2.2325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717627501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:31 Heat of formation + Delta-G solvation = -108.554267 kcal Electronic energy + Delta-G solvation = -21323.922271 eV Core-core repulsion = 17946.629363 eV Total energy + Delta-G solvation = -3377.292908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13595 -39.49903 -36.68385 -35.67710 -34.92525 -32.88493 -31.30943 -29.92648 -27.17983 -26.81650 -26.10923 -25.10695 -23.38619 -20.78256 -19.99343 -19.22450 -18.02345 -17.21538 -16.54315 -16.46637 -16.21311 -15.84758 -15.22820 -14.96586 -14.87561 -14.56771 -14.42202 -14.02853 -13.63895 -13.18388 -13.10724 -12.70513 -12.63386 -12.19157 -11.74193 -11.67489 -11.40361 -11.12575 -10.95205 -10.81881 -10.73533 -10.24610 -10.03408 -9.96691 -9.79611 -9.34169 -9.25838 -9.09662 -8.47016 -8.23929 -6.11660 -4.15086 2.85762 3.08251 3.26449 3.31509 3.33839 3.42675 3.77684 3.84486 4.28606 4.36777 4.75041 4.92055 4.94891 5.03938 5.11683 5.13771 5.24341 5.25095 5.28610 5.43044 5.50815 5.54657 5.66959 5.70942 5.80342 5.99324 6.22849 6.37996 6.46876 6.82413 7.31853 7.35519 7.47121 7.55647 7.61845 7.84676 7.86132 8.27232 8.37590 8.90602 9.50098 10.99173 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.003886 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.074118 B = 7204.054417 C = 7935.101451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.138 4.138 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.537 6.537 16 N -0.736 5.736 17 C 0.133 3.867 18 C -0.145 4.145 19 C 0.099 3.901 20 O -0.558 6.558 21 C 0.052 3.948 22 O -0.364 6.364 23 C 0.057 3.943 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.355 0.645 30 H 0.346 0.654 31 H 0.401 0.599 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.380 0.620 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -15.943 7.742 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.312 3.688 15 O -0.412 6.412 16 N -0.391 5.391 17 C 0.009 3.991 18 C -0.146 4.146 19 C 0.020 3.980 20 O -0.362 6.362 21 C -0.025 4.025 22 O -0.282 6.282 23 C -0.021 4.021 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.226 0.774 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.043 -17.039 7.198 19.459 hybrid contribution -0.006 2.248 0.283 2.266 sum 6.037 -14.791 7.482 17.640 Atomic orbital electron populations 1.69937 1.06027 1.26938 1.50302 1.25003 0.94866 0.99300 0.95061 0.86642 0.79604 0.83000 0.78689 1.20208 1.21190 1.20201 1.21138 0.92986 0.90894 1.51337 0.92768 1.19099 0.93701 0.91102 0.97356 1.22385 0.99890 0.93944 1.01507 1.21473 0.94591 0.92279 0.95695 0.88640 1.58752 1.18416 1.55913 1.03216 1.20939 0.81045 0.84401 0.82374 1.90643 1.60350 1.53474 1.36741 1.46053 1.47244 1.35399 1.10403 1.21297 0.93618 0.90707 0.93510 1.24032 0.96957 0.98779 0.94841 1.21723 0.93442 1.00349 0.82437 1.86606 1.37348 1.96678 1.15605 1.23982 0.91207 0.90811 0.96507 1.89739 1.71308 1.16404 1.50726 1.23836 0.90538 0.93589 0.94108 0.92796 0.96367 0.96370 0.92629 0.92566 0.83000 0.84107 0.76401 0.90911 0.90592 0.92738 0.92589 0.77352 0.89966 0.88839 0.88930 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.60 4.78 -26.73 -0.13 -2.73 16 11 C 0.07 1.21 3.21 -68.87 -0.22 0.99 16 12 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 13 N -0.83 -13.88 8.94 -5.65 -0.05 -13.93 16 14 C 0.53 8.19 7.08 -10.98 -0.08 8.12 16 15 O -0.54 -10.05 16.25 5.55 0.09 -9.96 16 16 N -0.74 -8.60 5.31 -60.30 -0.32 -8.92 16 17 C 0.13 1.35 5.19 -4.04 -0.02 1.33 16 18 C -0.15 -1.29 1.15 -153.42 -0.18 -1.47 16 19 C 0.10 0.78 6.29 37.16 0.23 1.01 16 20 O -0.56 -4.82 12.10 -52.75 -0.64 -5.46 16 21 C 0.05 0.52 8.07 37.61 0.30 0.83 16 22 O -0.36 -4.39 11.59 -52.75 -0.61 -5.01 16 23 C 0.06 0.51 8.08 37.61 0.30 0.82 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.35 5.95 7.55 -39.29 -0.30 5.65 16 30 H 0.35 5.88 8.58 -39.29 -0.34 5.55 16 31 H 0.40 3.99 6.80 -40.82 -0.28 3.71 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 34 H 0.05 0.39 6.55 -51.93 -0.34 0.05 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 1.67 9.12 45.56 0.42 2.08 16 37 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 38 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -33.20 332.04 -6.49 -39.69 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.36 Total: 11.13 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.33 Total: -3.60 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.37 Total: -47.81 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.16 Total: -20.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.20 -6.49 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717627501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.864 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds