Wall clock time and date at job start Mon Mar 30 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9 13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9 14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9 15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10 16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10 17 17 C 1.46496 * 119.99982 * 180.02562 * 16 14 11 18 18 C 1.53001 * 109.47008 * 180.02562 * 17 16 14 19 19 C 1.52995 * 113.00114 * 48.17156 * 18 17 16 20 20 O 1.42899 * 109.47395 * 180.02562 * 19 18 17 21 21 C 1.54041 * 113.81498 * 276.18947 * 18 17 16 22 22 O 1.44176 * 85.51687 * 223.19593 * 21 18 17 23 23 C 1.44177 * 93.34410 * 24.18967 * 22 21 18 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.00910 * 110.99485 * 296.04674 * 13 11 10 30 30 H 1.00897 * 111.00222 * 59.99157 * 13 11 10 31 31 H 0.97006 * 119.99721 * 0.02562 * 16 14 11 32 32 H 1.08998 * 109.47490 * 299.99876 * 17 16 14 33 33 H 1.08997 * 109.47684 * 60.00339 * 17 16 14 34 34 H 1.08999 * 109.47331 * 300.00152 * 19 18 17 35 35 H 1.09003 * 109.47312 * 60.00172 * 19 18 17 36 36 H 0.96701 * 114.00474 * 179.97438 * 20 19 18 37 37 H 1.09003 * 113.86167 * 337.33786 * 21 18 17 38 38 H 1.08992 * 113.86642 * 109.04684 * 21 18 17 39 39 H 1.08993 * 113.86935 * 221.66229 * 23 22 21 40 40 H 1.09002 * 113.86498 * 89.95223 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 1 0.7920 -5.0090 0.8377 13 7 0.7223 -5.1156 -1.2593 14 6 2.4552 -6.1301 0.1090 15 8 2.7823 -6.7514 -0.8799 16 7 2.9640 -6.4620 1.3121 17 6 3.9124 -7.5728 1.4252 18 6 4.3317 -7.7386 2.8873 19 6 3.1445 -7.7490 3.8522 20 8 3.6198 -7.9063 5.1906 21 6 5.4769 -6.8017 3.3159 22 8 6.0206 -7.9576 3.9845 23 6 5.3333 -8.8853 3.1210 24 1 -0.4851 0.8401 0.0004 25 1 0.6283 -2.5592 0.8921 26 1 0.6202 -2.5546 -0.8878 27 1 2.8677 -3.6020 -0.9008 28 1 2.8758 -3.6067 0.8792 29 1 0.0171 -4.3973 -1.3305 30 1 1.3382 -5.0980 -2.0583 31 1 2.7022 -5.9653 2.1032 32 1 3.4397 -8.4911 1.0769 33 1 4.7918 -7.3633 0.8162 34 1 2.6000 -6.8084 3.7686 35 1 2.4805 -8.5766 3.6025 36 1 2.9196 -7.9212 5.8575 37 1 6.0876 -6.4439 2.4870 38 1 5.1659 -6.0063 3.9931 39 1 4.9084 -9.7423 3.6435 40 1 5.9001 -9.1636 2.2325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717627501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:31 Heat of formation + Delta-G solvation = -136.665705 kcal Electronic energy + Delta-G solvation = -21325.141275 eV Core-core repulsion = 17946.629363 eV Total energy + Delta-G solvation = -3378.511912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.93360 -40.70664 -37.35417 -37.11356 -36.01733 -34.82701 -32.20978 -31.67062 -28.49630 -27.54748 -27.04966 -26.33389 -24.82876 -22.36646 -21.23179 -19.99135 -19.05622 -18.41256 -18.00290 -17.39952 -17.21698 -16.74905 -16.57204 -16.17045 -16.02619 -15.72036 -15.53374 -15.31960 -14.89366 -14.59477 -14.27892 -14.00395 -13.65779 -13.41913 -13.32979 -12.92113 -12.66573 -12.54400 -12.37999 -12.14255 -11.79492 -11.72216 -11.60509 -11.30974 -10.84515 -10.75200 -10.55376 -10.54691 -10.14123 -9.63410 -8.20988 -6.31133 1.40660 1.41628 1.49594 1.60875 2.05472 2.40386 2.69548 3.04551 3.12955 3.21701 3.56864 3.76748 3.80898 4.06989 4.13837 4.26285 4.29542 4.36866 4.47073 4.54372 4.61011 4.62920 4.67496 4.76712 4.85843 4.94320 5.07213 5.09952 5.24774 5.37420 5.47496 5.66758 5.81499 6.07694 6.21948 6.47286 6.49003 6.84418 6.92238 7.20597 7.38100 8.89481 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.003886 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.074118 B = 7204.054417 C = 7935.101451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.111 0.889 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.570 6.570 16 N -0.719 5.719 17 C 0.136 3.864 18 C -0.133 4.133 19 C 0.097 3.903 20 O -0.577 6.577 21 C 0.046 3.954 22 O -0.392 6.392 23 C 0.056 3.944 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.352 0.648 30 H 0.343 0.657 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -16.305 8.469 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.161 4.161 11 C -0.035 4.035 12 H 0.129 0.871 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.448 6.448 16 N -0.373 5.373 17 C 0.012 3.988 18 C -0.134 4.134 19 C 0.019 3.981 20 O -0.385 6.385 21 C -0.030 4.030 22 O -0.311 6.311 23 C -0.021 4.021 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.641 -17.412 7.974 20.270 hybrid contribution -0.191 2.324 0.099 2.334 sum 6.450 -15.088 8.074 18.288 Atomic orbital electron populations 1.70048 1.07454 1.27800 1.51323 1.25831 0.95692 1.02865 0.94766 0.85630 0.78406 0.78801 0.79004 1.19700 1.20878 1.19248 1.21602 0.93355 0.92496 1.50897 0.92721 1.18972 0.94055 0.91973 0.95767 1.22136 0.98788 0.93742 1.01447 1.21425 0.94749 0.91280 0.96055 0.87130 1.58773 1.18349 1.55640 1.03416 1.20698 0.80839 0.84013 0.82967 1.90636 1.61479 1.54620 1.38061 1.45915 1.46406 1.35362 1.09576 1.21354 0.92954 0.90060 0.94387 1.23918 0.97031 0.98318 0.94121 1.21771 0.92960 1.01258 0.82110 1.86562 1.38878 1.96734 1.16277 1.24072 0.91821 0.90632 0.96509 1.89712 1.71934 1.17592 1.51832 1.24014 0.90375 0.93464 0.94259 0.92748 0.97854 0.97962 0.93762 0.91450 0.83260 0.84358 0.75131 0.90507 0.91013 0.92004 0.91362 0.75366 0.89578 0.89074 0.88176 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -29.33 9.11 25.60 0.23 -29.09 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.03 1.40 4.74 29.85 0.14 1.54 16 10 C -0.12 -4.49 4.78 30.59 0.15 -4.35 16 11 C 0.08 2.51 3.21 44.17 0.14 2.65 16 12 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 13 N -0.83 -27.32 8.94 -171.80 -1.54 -28.86 16 14 C 0.53 15.65 7.08 87.66 0.62 16.27 16 15 O -0.57 -20.69 16.25 -3.05 -0.05 -20.74 16 16 N -0.72 -15.29 5.31 -463.06 -2.46 -17.75 16 17 C 0.14 2.49 5.19 86.38 0.45 2.94 16 18 C -0.13 -2.11 1.15 -51.48 -0.06 -2.16 16 19 C 0.10 1.31 6.29 71.98 0.45 1.76 16 20 O -0.58 -8.88 12.10 -132.23 -1.60 -10.48 16 21 C 0.05 0.88 8.07 72.28 0.58 1.46 16 22 O -0.39 -9.00 11.59 -132.23 -1.53 -10.53 16 23 C 0.06 0.91 8.08 72.28 0.58 1.49 16 24 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.35 11.81 7.55 -89.69 -0.68 11.14 16 30 H 0.34 11.62 8.58 -89.70 -0.77 10.85 16 31 H 0.41 7.15 6.80 -92.70 -0.63 6.52 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.43 7.93 -2.39 -0.02 1.41 16 34 H 0.06 0.73 6.55 -2.39 -0.02 0.72 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.40 2.71 9.12 -74.06 -0.68 2.04 16 37 H 0.09 1.52 7.96 -2.39 -0.02 1.50 16 38 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -69.74 332.04 -2.78 -72.53 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -1.67 Total: 30.94 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 3.75 Total: -6.65 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.71 Total: -99.84 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -3.18 Total: -41.75 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.74 -2.78 -72.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717627501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.140 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds