Wall clock time and date at job start Mon Mar 30 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 111.00147 * 2 1 4 4 C 1.46904 * 110.99866 * 123.95348 * 2 1 3 5 5 C 1.47199 * 109.46867 * 169.99732 * 4 2 1 6 6 C 3.42786 * 156.18642 * 142.19999 * 2 1 3 7 7 C 4.81137 * 162.46945 * 151.68518 * 2 1 3 8 8 N 1.46903 * 109.46939 * 302.17302 * 7 6 5 9 9 C 1.46897 * 110.99701 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47127 * 324.99583 * 9 8 7 11 11 C 1.50696 * 109.47661 * 84.99930 * 9 8 7 12 12 H 1.07992 * 120.00327 * 234.80216 * 11 9 8 13 13 C 1.37880 * 119.99741 * 54.79229 * 11 9 8 14 14 N 1.31520 * 120.00156 * 2.53118 * 13 11 9 15 15 Si 1.86802 * 120.00014 * 182.52785 * 13 11 9 16 16 H 1.48497 * 109.47159 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47179 * 120.00359 * 15 13 11 18 18 H 1.48503 * 109.46817 * 240.00337 * 15 13 11 19 19 C 1.50700 * 109.46942 * 205.00344 * 9 8 7 20 20 C 1.38237 * 119.99923 * 330.49637 * 19 9 8 21 21 C 1.38230 * 120.00034 * 180.02562 * 20 19 9 22 22 C 1.38230 * 120.00382 * 359.96129 * 21 20 19 23 23 C 1.38240 * 119.99864 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00155 * 150.48344 * 19 9 8 25 25 H 1.09001 * 109.46668 * 296.04797 * 1 2 3 26 26 H 1.08993 * 109.47350 * 56.04769 * 1 2 3 27 27 H 1.09006 * 109.47007 * 176.05066 * 1 2 3 28 28 H 1.08997 * 109.46921 * 183.95578 * 3 2 1 29 29 H 1.08999 * 109.46454 * 303.95307 * 3 2 1 30 30 H 1.08995 * 109.46927 * 63.95326 * 3 2 1 31 31 H 1.09008 * 109.47113 * 49.99990 * 4 2 1 32 32 H 1.08995 * 109.47103 * 289.99729 * 4 2 1 33 33 H 1.09001 * 109.46582 * 182.17284 * 7 6 5 34 34 H 1.09001 * 109.46975 * 62.17493 * 7 6 5 35 35 H 1.00896 * 111.00051 * 303.95476 * 8 7 6 36 36 H 0.96999 * 119.99883 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.99728 * 359.97438 * 20 19 9 38 38 H 1.08004 * 120.00107 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00370 * 179.72251 * 22 21 20 40 40 H 1.07994 * 120.00362 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.00262 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4473 -0.9482 0.9767 6 6 4.6051 -1.0936 0.8483 7 6 6.0570 -1.2759 0.6874 8 7 6.5752 -2.0842 1.7992 9 6 8.0245 -2.2866 1.6720 10 1 8.2878 -2.3759 0.6180 11 6 8.7508 -1.1111 2.2733 12 1 9.4731 -0.5643 1.6855 13 6 8.4928 -0.7334 3.5741 14 7 7.6501 -1.4290 4.3060 15 14 9.3403 0.7663 4.2968 16 1 10.2345 1.3694 3.2761 17 1 8.3183 1.7611 4.7103 18 1 10.1423 0.3599 5.4787 19 6 8.4213 -3.5467 2.3972 20 6 7.6966 -3.9691 3.4960 21 6 8.0608 -5.1246 4.1615 22 6 9.1492 -5.8582 3.7279 23 6 9.8731 -5.4365 2.6283 24 6 9.5097 -4.2802 1.9635 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3431 -0.0709 29 1 1.5899 1.9162 -0.8525 30 1 1.7045 1.8723 0.9233 31 1 1.5090 -1.7407 1.1757 32 1 1.7976 -0.2248 2.0628 33 1 6.5474 -0.3024 0.6864 34 1 6.2570 -1.7844 -0.2557 35 1 6.3454 -1.6659 2.6882 36 1 7.4689 -1.1635 5.2212 37 1 6.8463 -3.3958 3.8349 38 1 7.4948 -5.4544 5.0202 39 1 9.4364 -6.7585 4.2506 40 1 10.7237 -6.0093 2.2898 41 1 10.0755 -3.9506 1.1048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717756593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:12 Heat of formation + Delta-G solvation = 86.950117 kcal Electronic energy + Delta-G solvation = -19985.192365 eV Core-core repulsion = 17059.519177 eV Total energy + Delta-G solvation = -2925.673188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.22616 -37.56260 -35.73134 -33.24097 -31.59867 -30.26147 -29.64203 -27.88661 -27.62990 -26.39816 -24.25667 -22.45110 -21.94633 -21.14875 -19.81428 -16.88008 -16.54802 -15.78074 -15.48850 -15.39872 -15.08776 -14.48045 -14.05058 -13.78825 -13.74098 -13.14684 -12.85546 -12.72411 -12.49654 -12.27793 -12.11777 -11.93769 -11.77227 -11.68717 -11.51883 -11.30354 -11.06300 -10.79165 -10.41505 -10.05537 -9.81389 -9.61710 -9.52248 -9.20419 -8.73186 -8.43283 -7.76988 -7.41323 -7.10868 -6.09340 -4.36811 2.55176 2.66879 3.04444 3.17418 3.26829 3.29530 3.29831 4.13750 4.25744 4.68839 4.99783 5.06108 5.10947 5.21807 5.33392 5.41242 5.60223 5.65505 5.70136 5.77370 5.86684 5.93700 6.00559 6.11689 6.24951 6.37013 6.45467 6.49549 6.72335 6.83391 6.89529 6.91842 6.94977 7.18088 7.32417 7.56442 7.62555 7.79280 7.93434 8.03861 8.19811 8.27961 8.37059 8.78092 8.99720 9.36117 10.76026 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.004564 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.781801 B = 6133.640339 C = 7209.527193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.179 3.821 5 C -0.221 4.221 6 C -0.124 4.124 7 C 0.168 3.832 8 N -0.684 5.684 9 C 0.237 3.763 10 H 0.039 0.961 11 C -0.542 4.542 12 H 0.060 0.940 13 C 0.072 3.928 14 N -0.877 5.877 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.018 4.018 20 C -0.051 4.051 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.369 0.631 36 H 0.267 0.733 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 0.565 -4.155 9.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.124 4.124 4 C 0.053 3.947 5 C -0.222 4.222 6 C -0.125 4.125 7 C 0.039 3.961 8 N -0.321 5.321 9 C 0.128 3.872 10 H 0.057 0.943 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.131 4.131 14 N -0.515 5.515 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.019 4.019 20 C -0.070 4.070 21 C -0.166 4.166 22 C -0.171 4.171 23 C -0.163 4.163 24 C -0.153 4.153 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.194 0.806 36 H 0.077 0.923 37 H 0.161 0.839 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.702 -0.240 -4.681 9.884 hybrid contribution 0.740 2.082 1.661 2.765 sum -7.962 1.842 -3.019 8.712 Atomic orbital electron populations 1.22385 0.87032 1.02403 1.00515 1.61949 1.07620 1.14326 1.43163 1.22400 1.01636 0.88237 1.00120 1.18809 0.86034 0.98539 0.91333 1.21652 0.93070 1.04412 1.03105 1.22784 0.93836 0.97773 0.98151 1.18791 0.82964 0.97420 0.96900 1.61009 1.14969 1.50007 1.06136 1.18118 0.84972 0.90334 0.93737 0.94274 1.21760 1.24989 1.12885 0.98465 0.92140 1.25019 0.94940 0.96670 0.96494 1.69612 1.34750 1.37835 1.09299 0.86504 0.79547 0.82602 0.79243 1.19724 1.20882 1.20761 1.20120 0.92936 0.93435 0.95451 1.21324 1.00143 0.92512 0.92977 1.21085 0.98111 0.97054 1.00377 1.20764 0.97818 1.00146 0.98370 1.20744 1.00110 0.97851 0.97552 1.20827 0.98285 0.95581 1.00594 0.95594 0.91275 0.91160 0.90877 0.91521 0.95605 0.89010 0.93012 0.93083 0.90497 0.80579 0.92261 0.83875 0.88152 0.88348 0.88127 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 60.07 0.57 0.81 16 2 N -0.55 -6.96 5.00 -254.81 -1.27 -8.23 16 3 C 0.02 0.29 9.36 60.06 0.56 0.85 16 4 C 0.18 2.48 5.46 -6.61 -0.04 2.44 16 5 C -0.22 -3.93 12.44 -37.12 -0.46 -4.39 16 6 C -0.12 -2.42 13.60 -37.12 -0.50 -2.92 16 7 C 0.17 3.40 5.96 -6.61 -0.04 3.36 16 8 N -0.68 -15.63 5.37 -112.27 -0.60 -16.23 16 9 C 0.24 5.62 2.50 -70.02 -0.18 5.45 16 10 H 0.04 0.89 7.75 -51.92 -0.40 0.49 16 11 C -0.54 -13.82 8.62 -34.44 -0.30 -14.12 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.83 5.05 -17.82 -0.09 1.74 16 14 N -0.88 -22.33 7.97 55.43 0.44 -21.89 16 15 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.02 -0.43 4.79 -104.62 -0.50 -0.93 16 20 C -0.05 -1.19 7.66 -39.58 -0.30 -1.49 16 21 C -0.15 -3.11 10.05 -39.59 -0.40 -3.51 16 22 C -0.15 -2.99 10.05 -39.58 -0.40 -3.38 16 23 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 24 C -0.13 -2.90 9.70 -39.58 -0.38 -3.28 16 25 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.07 1.00 7.29 -51.93 -0.38 0.62 16 29 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 1.13 8.06 -51.92 -0.42 0.72 16 32 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.05 1.06 8.00 -51.93 -0.42 0.64 16 34 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 35 H 0.37 9.09 5.50 -39.29 -0.22 8.87 16 36 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.14 3.54 5.59 -52.49 -0.29 3.24 16 38 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -26.96 341.43 -10.47 -37.43 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.31 Total: 11.15 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -2.85 Total: -22.63 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -1.43 Total: -46.36 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.96 -10.47 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717756593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.376 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds