Wall clock time and date at job start Mon Mar 30 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 111.00147 * 2 1 4 4 C 1.46904 * 110.99866 * 123.95348 * 2 1 3 5 5 C 1.47199 * 109.46867 * 169.99732 * 4 2 1 6 6 C 3.42786 * 156.18642 * 142.19999 * 2 1 3 7 7 C 4.81137 * 162.46945 * 151.68518 * 2 1 3 8 8 N 1.46903 * 109.46939 * 302.17302 * 7 6 5 9 9 C 1.46897 * 110.99701 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47127 * 324.99583 * 9 8 7 11 11 C 1.50696 * 109.47661 * 84.99930 * 9 8 7 12 12 H 1.07992 * 120.00327 * 234.80216 * 11 9 8 13 13 C 1.37880 * 119.99741 * 54.79229 * 11 9 8 14 14 N 1.31520 * 120.00156 * 2.53118 * 13 11 9 15 15 Si 1.86802 * 120.00014 * 182.52785 * 13 11 9 16 16 H 1.48497 * 109.47159 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47179 * 120.00359 * 15 13 11 18 18 H 1.48503 * 109.46817 * 240.00337 * 15 13 11 19 19 C 1.50700 * 109.46942 * 205.00344 * 9 8 7 20 20 C 1.38237 * 119.99923 * 330.49637 * 19 9 8 21 21 C 1.38230 * 120.00034 * 180.02562 * 20 19 9 22 22 C 1.38230 * 120.00382 * 359.96129 * 21 20 19 23 23 C 1.38240 * 119.99864 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00155 * 150.48344 * 19 9 8 25 25 H 1.09001 * 109.46668 * 296.04797 * 1 2 3 26 26 H 1.08993 * 109.47350 * 56.04769 * 1 2 3 27 27 H 1.09006 * 109.47007 * 176.05066 * 1 2 3 28 28 H 1.08997 * 109.46921 * 183.95578 * 3 2 1 29 29 H 1.08999 * 109.46454 * 303.95307 * 3 2 1 30 30 H 1.08995 * 109.46927 * 63.95326 * 3 2 1 31 31 H 1.09008 * 109.47113 * 49.99990 * 4 2 1 32 32 H 1.08995 * 109.47103 * 289.99729 * 4 2 1 33 33 H 1.09001 * 109.46582 * 182.17284 * 7 6 5 34 34 H 1.09001 * 109.46975 * 62.17493 * 7 6 5 35 35 H 1.00896 * 111.00051 * 303.95476 * 8 7 6 36 36 H 0.96999 * 119.99883 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.99728 * 359.97438 * 20 19 9 38 38 H 1.08004 * 120.00107 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00370 * 179.72251 * 22 21 20 40 40 H 1.07994 * 120.00362 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.00262 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4473 -0.9482 0.9767 6 6 4.6051 -1.0936 0.8483 7 6 6.0570 -1.2759 0.6874 8 7 6.5752 -2.0842 1.7992 9 6 8.0245 -2.2866 1.6720 10 1 8.2878 -2.3759 0.6180 11 6 8.7508 -1.1111 2.2733 12 1 9.4731 -0.5643 1.6855 13 6 8.4928 -0.7334 3.5741 14 7 7.6501 -1.4290 4.3060 15 14 9.3403 0.7663 4.2968 16 1 10.2345 1.3694 3.2761 17 1 8.3183 1.7611 4.7103 18 1 10.1423 0.3599 5.4787 19 6 8.4213 -3.5467 2.3972 20 6 7.6966 -3.9691 3.4960 21 6 8.0608 -5.1246 4.1615 22 6 9.1492 -5.8582 3.7279 23 6 9.8731 -5.4365 2.6283 24 6 9.5097 -4.2802 1.9635 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3431 -0.0709 29 1 1.5899 1.9162 -0.8525 30 1 1.7045 1.8723 0.9233 31 1 1.5090 -1.7407 1.1757 32 1 1.7976 -0.2248 2.0628 33 1 6.5474 -0.3024 0.6864 34 1 6.2570 -1.7844 -0.2557 35 1 6.3454 -1.6659 2.6882 36 1 7.4689 -1.1635 5.2212 37 1 6.8463 -3.3958 3.8349 38 1 7.4948 -5.4544 5.0202 39 1 9.4364 -6.7585 4.2506 40 1 10.7237 -6.0093 2.2898 41 1 10.0755 -3.9506 1.1048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717756593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:11 Heat of formation + Delta-G solvation = 72.363989 kcal Electronic energy + Delta-G solvation = -19985.824867 eV Core-core repulsion = 17059.519177 eV Total energy + Delta-G solvation = -2926.305690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89855 -38.55828 -37.42781 -34.85429 -33.31202 -31.85160 -31.26757 -29.27587 -28.49535 -28.03528 -25.87470 -24.13804 -23.04844 -22.72470 -21.53708 -18.57862 -18.18807 -17.23046 -16.91127 -16.44651 -16.36011 -15.98340 -15.76127 -15.47711 -15.19613 -14.60153 -14.47142 -14.07103 -13.79052 -13.68992 -13.44293 -13.23999 -13.07749 -13.01469 -12.91248 -12.79279 -12.58510 -12.56985 -12.19904 -11.81077 -11.52390 -11.27125 -11.10034 -10.67353 -10.61033 -9.41971 -9.38061 -9.11223 -8.91384 -7.98564 -6.34426 0.89377 1.03571 1.34766 1.39739 1.47726 1.65520 1.83369 2.36789 3.01503 3.10502 3.39665 3.42601 4.09871 4.21229 4.28229 4.39126 4.40953 4.46267 4.50481 4.57835 4.68232 4.71228 4.74113 4.78740 4.82185 4.92658 4.96621 4.97955 5.03774 5.17788 5.23830 5.53075 5.63653 5.69636 5.91946 5.92990 6.03100 6.06209 6.09392 6.32794 6.49625 6.59357 6.74364 6.92580 7.09561 7.39911 8.81819 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.004564 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.781801 B = 6133.640339 C = 7209.527193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.563 5.563 3 C 0.025 3.975 4 C 0.175 3.825 5 C -0.196 4.196 6 C -0.176 4.176 7 C 0.174 3.826 8 N -0.685 5.685 9 C 0.235 3.765 10 H 0.036 0.964 11 C -0.560 4.560 12 H 0.049 0.951 13 C 0.038 3.962 14 N -0.884 5.884 15 Si 0.944 3.056 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.283 1.283 19 C -0.045 4.045 20 C -0.072 4.072 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.141 4.141 24 C -0.150 4.150 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.357 0.643 36 H 0.266 0.734 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 -0.169 -3.880 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.287 5.287 3 C -0.124 4.124 4 C 0.049 3.951 5 C -0.198 4.198 6 C -0.178 4.178 7 C 0.045 3.955 8 N -0.321 5.321 9 C 0.127 3.873 10 H 0.055 0.945 11 C -0.599 4.599 12 H 0.067 0.933 13 C -0.164 4.164 14 N -0.522 5.522 15 Si 0.771 3.229 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.209 1.209 19 C -0.046 4.046 20 C -0.091 4.091 21 C -0.174 4.174 22 C -0.167 4.167 23 C -0.159 4.159 24 C -0.168 4.168 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.181 0.819 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.345 -0.978 -4.423 10.385 hybrid contribution 0.868 2.267 1.545 2.877 sum -8.477 1.289 -2.878 9.045 Atomic orbital electron populations 1.22473 0.84638 1.03488 1.01658 1.61930 1.09791 1.14482 1.42511 1.22398 1.00161 0.88392 1.01409 1.19055 0.83554 1.00076 0.92457 1.22609 0.94162 1.02128 1.00858 1.22795 0.94235 1.00209 1.00556 1.18682 0.83760 0.96537 0.96494 1.61013 1.14536 1.50371 1.06135 1.18098 0.85267 0.90442 0.93502 0.94546 1.21894 1.25229 1.13886 0.98848 0.93250 1.25532 0.95564 0.98527 0.96764 1.69749 1.34973 1.38339 1.09152 0.85717 0.78630 0.80269 0.78263 1.19847 1.20592 1.20933 1.20215 0.94223 0.93983 0.96143 1.21215 1.00178 0.93786 0.93871 1.21356 0.98927 0.96400 1.00754 1.21184 0.96604 1.00832 0.98046 1.21158 1.00735 0.97033 0.96952 1.21076 0.97957 0.96415 1.01370 0.94542 0.89938 0.90210 0.93408 0.89576 0.94872 0.87147 0.91782 0.94329 0.89622 0.81921 0.92420 0.86022 0.86265 0.84659 0.84599 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.57 127.69 1.22 1.61 16 2 N -0.56 -13.31 5.00 -960.08 -4.80 -18.11 16 3 C 0.02 0.55 9.36 127.69 1.20 1.75 16 4 C 0.17 4.57 5.46 84.50 0.46 5.03 16 5 C -0.20 -6.98 12.44 31.13 0.39 -6.60 16 6 C -0.18 -7.12 13.60 31.13 0.42 -6.70 16 7 C 0.17 7.38 5.96 84.50 0.50 7.89 16 8 N -0.68 -32.66 5.37 -509.12 -2.73 -35.39 16 9 C 0.24 11.59 2.50 43.42 0.11 11.70 16 10 H 0.04 1.74 7.75 -2.38 -0.02 1.72 16 11 C -0.56 -29.41 8.62 25.60 0.22 -29.19 16 12 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 13 C 0.04 1.98 5.05 84.65 0.43 2.41 16 14 N -0.88 -46.06 7.97 21.45 0.17 -45.89 16 15 Si 0.94 42.20 29.54 68.60 2.03 44.23 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 C -0.04 -2.13 4.79 -19.87 -0.10 -2.23 16 20 C -0.07 -3.39 7.66 22.27 0.17 -3.22 16 21 C -0.16 -6.37 10.05 22.27 0.22 -6.15 16 22 C -0.15 -5.38 10.05 22.27 0.22 -5.16 16 23 C -0.14 -5.18 10.05 22.27 0.22 -4.96 16 24 C -0.15 -6.37 9.70 22.27 0.22 -6.15 16 25 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 27 H 0.08 1.12 8.12 -2.38 -0.02 1.10 16 28 H 0.05 1.31 7.29 -2.39 -0.02 1.29 16 29 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 2.49 8.06 -2.38 -0.02 2.47 16 32 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 33 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 34 H 0.09 3.38 8.06 -2.39 -0.02 3.36 16 35 H 0.36 18.40 5.50 -89.70 -0.49 17.91 16 36 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 37 H 0.12 6.22 5.59 -2.91 -0.02 6.21 16 38 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -58.48 341.43 1.10 -57.38 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: 0.51 Total: 37.75 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 5.91 Total: -39.97 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -7.36 Total: -99.39 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -58.48 1.10 -57.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717756593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.746 kcal (2) G-P(sol) polarization free energy of solvation -58.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds