Wall clock time and date at job start Mon Mar 30 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 110.99650 * 2 1 4 4 C 1.46901 * 111.00031 * 123.95464 * 2 1 3 5 5 C 1.47205 * 109.46824 * 170.00276 * 4 2 1 6 6 C 3.42790 * 156.18911 * 142.19559 * 2 1 3 7 7 C 4.81127 * 162.47376 * 151.68412 * 2 1 3 8 8 N 1.46896 * 109.47325 * 36.22324 * 7 6 5 9 9 C 1.46896 * 111.00109 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.47409 * 34.99713 * 9 8 7 11 11 C 1.50698 * 109.47275 * 274.99570 * 9 8 7 12 12 H 1.07996 * 120.00015 * 294.98359 * 11 9 8 13 13 C 1.37878 * 120.00062 * 114.70128 * 11 9 8 14 14 N 1.31516 * 120.00085 * 184.84358 * 13 11 9 15 15 Si 1.86798 * 119.99907 * 4.84776 * 13 11 9 16 16 H 1.48496 * 109.47287 * 84.70357 * 15 13 11 17 17 H 1.48512 * 109.46918 * 204.69945 * 15 13 11 18 18 H 1.48496 * 109.47190 * 324.69894 * 15 13 11 19 19 C 1.50702 * 109.47386 * 154.99507 * 9 8 7 20 20 C 1.38232 * 120.00041 * 44.79460 * 19 9 8 21 21 C 1.38229 * 120.00161 * 179.81158 * 20 19 9 22 22 C 1.38237 * 119.99956 * 0.39550 * 21 20 19 23 23 C 1.38239 * 119.99992 * 359.85154 * 22 21 20 24 24 C 1.38231 * 119.99695 * 359.96363 * 23 22 21 25 25 H 1.09000 * 109.46893 * 296.04069 * 1 2 3 26 26 H 1.08994 * 109.47136 * 56.04486 * 1 2 3 27 27 H 1.09003 * 109.46787 * 176.05182 * 1 2 3 28 28 H 1.09008 * 109.47023 * 183.95667 * 3 2 1 29 29 H 1.09009 * 109.47505 * 303.95329 * 3 2 1 30 30 H 1.08993 * 109.47455 * 63.95654 * 3 2 1 31 31 H 1.08996 * 109.47081 * 50.00272 * 4 2 1 32 32 H 1.08999 * 109.46688 * 289.99827 * 4 2 1 33 33 H 1.08992 * 109.47334 * 276.21565 * 7 6 5 34 34 H 1.08999 * 109.46792 * 156.21826 * 7 6 5 35 35 H 1.00896 * 111.00860 * 56.03730 * 8 7 6 36 36 H 0.96999 * 120.00381 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99569 * 359.97438 * 20 19 9 38 38 H 1.07996 * 120.00527 * 180.22814 * 21 20 19 39 39 H 1.08000 * 120.00301 * 179.83607 * 22 21 20 40 40 H 1.08000 * 120.00078 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.99919 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4474 -0.9481 0.9766 6 6 4.6052 -1.0934 0.8483 7 6 6.0570 -1.2755 0.6872 8 7 6.3121 -2.4335 -0.1798 9 6 7.7539 -2.6458 -0.3640 10 1 8.2798 -2.3862 0.5549 11 6 8.2501 -1.7755 -1.4897 12 1 7.9005 -1.9446 -2.4974 13 6 9.1460 -0.7596 -1.2322 14 7 9.5060 0.0598 -2.1960 15 14 9.8487 -0.5470 0.4855 16 1 11.0224 -1.4408 0.6543 17 1 10.2697 0.8643 0.6769 18 1 8.8127 -0.8951 1.4907 19 6 8.0101 -4.0930 -0.6975 20 6 7.2152 -4.7396 -1.6252 21 6 7.4526 -6.0659 -1.9340 22 6 8.4798 -6.7479 -1.3091 23 6 9.2716 -6.1027 -0.3775 24 6 9.0366 -4.7753 -0.0716 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8525 30 1 1.7044 1.8723 0.9232 31 1 1.5091 -1.7406 1.1756 32 1 1.7976 -0.2247 2.0627 33 1 6.5124 -1.4448 1.6629 34 1 6.4873 -0.3817 0.2356 35 1 5.8458 -2.3297 -1.0685 36 1 10.1365 0.7743 -2.0150 37 1 6.4102 -4.2078 -2.1107 38 1 6.8339 -6.5701 -2.6615 39 1 8.6637 -7.7849 -1.5484 40 1 10.0739 -6.6356 0.1110 41 1 9.6549 -4.2713 0.6565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717756600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:15 Heat of formation + Delta-G solvation = 83.197728 kcal Electronic energy + Delta-G solvation = -19797.325014 eV Core-core repulsion = 16871.489110 eV Total energy + Delta-G solvation = -2925.835904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.61278 -37.61531 -35.95564 -33.25894 -32.05734 -30.64250 -30.16200 -28.13397 -27.64802 -26.60409 -24.40077 -22.57530 -22.09141 -21.63362 -19.78565 -17.54553 -16.67882 -16.09733 -15.54620 -15.44705 -14.92343 -14.84240 -14.51995 -14.01646 -13.84785 -13.25797 -13.13951 -12.85085 -12.70542 -12.51080 -12.39142 -12.16171 -11.98824 -11.89179 -11.81528 -11.70136 -11.18791 -11.03288 -10.48924 -10.29078 -9.91627 -9.63606 -9.53774 -9.38097 -8.78616 -8.46046 -8.20818 -7.93142 -7.38634 -6.28281 -4.31278 2.12303 2.18351 2.93690 3.08662 3.13704 3.19998 3.23738 4.12894 4.21209 4.48909 4.59664 5.03351 5.07451 5.16739 5.29597 5.31162 5.42481 5.53752 5.54463 5.57902 5.61340 5.69161 5.73091 5.94728 6.00169 6.07016 6.18674 6.27017 6.34361 6.38937 6.45519 6.74255 6.83771 6.86667 6.91939 7.15380 7.23307 7.35204 7.50853 7.76687 7.88517 8.07453 8.20443 8.45223 8.77980 9.32348 10.84015 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.004887 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.664798 B = 5727.900067 C = 7066.159677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.024 3.976 4 C 0.179 3.821 5 C -0.212 4.212 6 C -0.130 4.130 7 C 0.167 3.833 8 N -0.681 5.681 9 C 0.201 3.799 10 H 0.056 0.944 11 C -0.536 4.536 12 H 0.079 0.921 13 C 0.080 3.920 14 N -0.885 5.885 15 Si 0.867 3.133 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.260 1.260 19 C -0.015 4.015 20 C -0.103 4.103 21 C -0.125 4.125 22 C -0.150 4.150 23 C -0.123 4.123 24 C -0.132 4.132 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.339 0.661 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 -3.226 6.246 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.124 4.124 4 C 0.052 3.948 5 C -0.214 4.214 6 C -0.132 4.132 7 C 0.039 3.961 8 N -0.312 5.312 9 C 0.093 3.907 10 H 0.073 0.927 11 C -0.575 4.575 12 H 0.097 0.903 13 C -0.125 4.125 14 N -0.521 5.521 15 Si 0.694 3.306 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.186 1.186 19 C -0.016 4.016 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.168 4.168 23 C -0.141 4.141 24 C -0.151 4.151 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.936 -3.733 6.279 13.152 hybrid contribution 0.577 1.380 0.849 1.720 sum -10.359 -2.353 7.128 12.793 Atomic orbital electron populations 1.22387 0.86926 1.02439 1.00527 1.61917 1.07651 1.14418 1.42940 1.22413 1.01759 0.88102 1.00122 1.18823 0.85869 0.98660 0.91417 1.21705 0.92888 1.03527 1.03297 1.22655 0.93881 0.98402 0.98268 1.18799 0.83946 0.94958 0.98385 1.61143 1.13010 1.37944 1.19085 1.18718 0.85833 0.89048 0.97059 0.92657 1.21515 1.27315 1.13119 0.95533 0.90279 1.25119 0.95471 0.95050 0.96812 1.69893 1.32726 1.16965 1.32548 0.87041 0.80328 0.77821 0.85371 1.19585 1.21142 1.18552 1.20175 0.92761 0.95538 0.93108 1.20854 0.99549 0.93906 0.97851 1.21026 0.98151 0.95138 0.99985 1.20853 0.97597 0.99230 0.99165 1.20927 0.99496 0.94960 0.98735 1.20931 0.98817 0.94280 1.01033 0.95682 0.91147 0.91149 0.90793 0.91330 0.95727 0.88898 0.93121 0.90049 0.91989 0.84299 0.92276 0.86636 0.87213 0.87388 0.87237 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.57 60.07 0.57 0.81 16 2 N -0.55 -6.87 5.00 -254.81 -1.27 -8.14 16 3 C 0.02 0.29 9.36 60.06 0.56 0.85 16 4 C 0.18 2.28 5.46 -6.61 -0.04 2.24 16 5 C -0.21 -3.53 12.44 -37.12 -0.46 -3.99 16 6 C -0.13 -2.41 13.60 -37.12 -0.50 -2.91 16 7 C 0.17 3.31 5.94 -6.61 -0.04 3.27 16 8 N -0.68 -14.22 5.79 -112.28 -0.65 -14.87 16 9 C 0.20 4.54 2.15 -70.02 -0.15 4.39 16 10 H 0.06 1.27 3.98 -51.92 -0.21 1.06 16 11 C -0.54 -14.12 8.60 -34.44 -0.30 -14.42 16 12 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 15 Si 0.87 20.16 27.24 -169.99 -4.63 15.53 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.26 -5.65 6.26 56.52 0.35 -5.30 16 19 C -0.01 -0.31 4.93 -104.62 -0.52 -0.83 16 20 C -0.10 -2.04 9.28 -39.59 -0.37 -2.41 16 21 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 22 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 24 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 27 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.07 1.04 7.29 -51.92 -0.38 0.66 16 29 H 0.07 0.72 8.12 -51.92 -0.42 0.30 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 32 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 34 H 0.06 1.32 8.00 -51.93 -0.42 0.91 16 35 H 0.34 7.18 7.87 -39.29 -0.31 6.87 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.12 2.24 7.42 -52.49 -0.39 1.85 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 2.07 8.00 -52.48 -0.42 1.65 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -29.28 346.94 -9.82 -39.10 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.36 Total: 10.00 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.91 Total: -21.84 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -1.15 Total: -48.02 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.63 Total: 15.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.28 -9.82 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717756600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.297 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds