Wall clock time and date at job start Mon Mar 30 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46896 * 110.99650 * 2 1 4 4 C 1.46901 * 111.00031 * 123.95464 * 2 1 3 5 5 C 1.47205 * 109.46824 * 170.00276 * 4 2 1 6 6 C 3.42790 * 156.18911 * 142.19559 * 2 1 3 7 7 C 4.81127 * 162.47376 * 151.68412 * 2 1 3 8 8 N 1.46896 * 109.47325 * 36.22324 * 7 6 5 9 9 C 1.46896 * 111.00109 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.47409 * 34.99713 * 9 8 7 11 11 C 1.50698 * 109.47275 * 274.99570 * 9 8 7 12 12 H 1.07996 * 120.00015 * 294.98359 * 11 9 8 13 13 C 1.37878 * 120.00062 * 114.70128 * 11 9 8 14 14 N 1.31516 * 120.00085 * 184.84358 * 13 11 9 15 15 Si 1.86798 * 119.99907 * 4.84776 * 13 11 9 16 16 H 1.48496 * 109.47287 * 84.70357 * 15 13 11 17 17 H 1.48512 * 109.46918 * 204.69945 * 15 13 11 18 18 H 1.48496 * 109.47190 * 324.69894 * 15 13 11 19 19 C 1.50702 * 109.47386 * 154.99507 * 9 8 7 20 20 C 1.38232 * 120.00041 * 44.79460 * 19 9 8 21 21 C 1.38229 * 120.00161 * 179.81158 * 20 19 9 22 22 C 1.38237 * 119.99956 * 0.39550 * 21 20 19 23 23 C 1.38239 * 119.99992 * 359.85154 * 22 21 20 24 24 C 1.38231 * 119.99695 * 359.96363 * 23 22 21 25 25 H 1.09000 * 109.46893 * 296.04069 * 1 2 3 26 26 H 1.08994 * 109.47136 * 56.04486 * 1 2 3 27 27 H 1.09003 * 109.46787 * 176.05182 * 1 2 3 28 28 H 1.09008 * 109.47023 * 183.95667 * 3 2 1 29 29 H 1.09009 * 109.47505 * 303.95329 * 3 2 1 30 30 H 1.08993 * 109.47455 * 63.95654 * 3 2 1 31 31 H 1.08996 * 109.47081 * 50.00272 * 4 2 1 32 32 H 1.08999 * 109.46688 * 289.99827 * 4 2 1 33 33 H 1.08992 * 109.47334 * 276.21565 * 7 6 5 34 34 H 1.08999 * 109.46792 * 156.21826 * 7 6 5 35 35 H 1.00896 * 111.00860 * 56.03730 * 8 7 6 36 36 H 0.96999 * 120.00381 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99569 * 359.97438 * 20 19 9 38 38 H 1.07996 * 120.00527 * 180.22814 * 21 20 19 39 39 H 1.08000 * 120.00301 * 179.83607 * 22 21 20 40 40 H 1.08000 * 120.00078 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.99919 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4474 -0.9481 0.9766 6 6 4.6052 -1.0934 0.8483 7 6 6.0570 -1.2755 0.6872 8 7 6.3121 -2.4335 -0.1798 9 6 7.7539 -2.6458 -0.3640 10 1 8.2798 -2.3862 0.5549 11 6 8.2501 -1.7755 -1.4897 12 1 7.9005 -1.9446 -2.4974 13 6 9.1460 -0.7596 -1.2322 14 7 9.5060 0.0598 -2.1960 15 14 9.8487 -0.5470 0.4855 16 1 11.0224 -1.4408 0.6543 17 1 10.2697 0.8643 0.6769 18 1 8.8127 -0.8951 1.4907 19 6 8.0101 -4.0930 -0.6975 20 6 7.2152 -4.7396 -1.6252 21 6 7.4526 -6.0659 -1.9340 22 6 8.4798 -6.7479 -1.3091 23 6 9.2716 -6.1027 -0.3775 24 6 9.0366 -4.7753 -0.0716 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8525 30 1 1.7044 1.8723 0.9232 31 1 1.5091 -1.7406 1.1756 32 1 1.7976 -0.2247 2.0627 33 1 6.5124 -1.4448 1.6629 34 1 6.4873 -0.3817 0.2356 35 1 5.8458 -2.3297 -1.0685 36 1 10.1365 0.7743 -2.0150 37 1 6.4102 -4.2078 -2.1107 38 1 6.8339 -6.5701 -2.6615 39 1 8.6637 -7.7849 -1.5484 40 1 10.0739 -6.6356 0.1110 41 1 9.6549 -4.2713 0.6565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717756600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:14 Heat of formation + Delta-G solvation = 64.558406 kcal Electronic energy + Delta-G solvation = -19798.133276 eV Core-core repulsion = 16871.489110 eV Total energy + Delta-G solvation = -2926.644165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10607 -38.57603 -37.57822 -34.90742 -33.85561 -32.08122 -31.57505 -29.47798 -28.51393 -28.18434 -26.00706 -24.19148 -23.21996 -22.91623 -21.41177 -19.45285 -18.15491 -17.40521 -16.79404 -16.49287 -16.38007 -16.25042 -16.05192 -15.49732 -15.31002 -14.94410 -14.46740 -14.28233 -14.04568 -13.83240 -13.78819 -13.54606 -13.39848 -13.05402 -12.98646 -12.84484 -12.71209 -12.58688 -12.01664 -11.87238 -11.75354 -11.28241 -10.95736 -10.94797 -10.80303 -9.63443 -9.45960 -9.35777 -9.10444 -8.39055 -6.45816 0.68866 0.74299 1.27100 1.29274 1.36916 1.62738 1.70091 2.23895 2.91659 3.11087 3.17727 3.30193 3.77713 4.13738 4.20266 4.27158 4.29574 4.36653 4.43026 4.48119 4.50380 4.55940 4.60923 4.69924 4.71413 4.74347 4.85761 4.91422 4.92964 4.98034 5.04268 5.29329 5.37997 5.40486 5.75504 5.79178 5.94218 5.94588 6.00014 6.06533 6.29415 6.37720 6.58035 6.63547 6.69126 7.21752 8.77125 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.004887 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.664798 B = 5727.900067 C = 7066.159677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.569 5.569 3 C 0.025 3.975 4 C 0.174 3.826 5 C -0.181 4.181 6 C -0.184 4.184 7 C 0.174 3.826 8 N -0.672 5.672 9 C 0.209 3.791 10 H 0.054 0.946 11 C -0.532 4.532 12 H 0.034 0.966 13 C 0.027 3.973 14 N -0.937 5.937 15 Si 0.925 3.075 16 H -0.261 1.261 17 H -0.285 1.285 18 H -0.239 1.239 19 C -0.048 4.048 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.151 4.151 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.333 0.667 36 H 0.268 0.732 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 -5.212 8.001 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.294 5.294 3 C -0.123 4.123 4 C 0.048 3.952 5 C -0.183 4.183 6 C -0.185 4.185 7 C 0.045 3.955 8 N -0.301 5.301 9 C 0.101 3.899 10 H 0.072 0.928 11 C -0.571 4.571 12 H 0.053 0.947 13 C -0.173 4.173 14 N -0.576 5.576 15 Si 0.749 3.251 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.163 1.163 19 C -0.049 4.049 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.139 4.139 24 C -0.170 4.170 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.141 -5.738 8.046 15.654 hybrid contribution 0.797 1.905 0.215 2.076 sum -11.343 -3.833 8.262 14.547 Atomic orbital electron populations 1.22452 0.84532 1.03453 1.01667 1.61880 1.09882 1.14531 1.43061 1.22378 0.99944 0.88476 1.01495 1.19119 0.83267 1.00249 0.92602 1.22644 0.93870 1.00925 1.00858 1.22496 0.94108 1.01094 1.00833 1.18650 0.85396 0.93371 0.98058 1.61148 1.11819 1.38446 1.18735 1.18564 0.86279 0.89818 0.95198 0.92807 1.21640 1.26811 1.13869 0.94798 0.94728 1.25913 0.95916 0.94644 1.00863 1.70041 1.34278 1.18172 1.35075 0.86097 0.80242 0.77809 0.80963 1.18533 1.21112 1.16276 1.20159 0.94655 0.95045 0.95083 1.20928 0.99676 0.95394 0.98155 1.21378 0.98719 0.94033 1.00216 1.21345 0.96102 1.00910 0.97604 1.21332 1.00120 0.93920 0.98489 1.21138 0.98566 0.95767 1.01511 0.94101 0.90450 0.90190 0.93745 0.90217 0.94147 0.86869 0.90796 0.89380 0.94401 0.84980 0.92298 0.87703 0.84369 0.83421 0.83847 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.57 127.69 1.22 1.63 16 2 N -0.57 -13.26 5.00 -960.07 -4.80 -18.06 16 3 C 0.03 0.58 9.36 127.69 1.20 1.77 16 4 C 0.17 4.03 5.46 84.50 0.46 4.49 16 5 C -0.18 -5.91 12.44 31.13 0.39 -5.52 16 6 C -0.18 -6.91 13.60 31.13 0.42 -6.49 16 7 C 0.17 7.11 5.94 84.50 0.50 7.61 16 8 N -0.67 -29.18 5.79 -509.15 -2.95 -32.12 16 9 C 0.21 9.77 2.15 43.42 0.09 9.87 16 10 H 0.05 2.50 3.98 -2.38 -0.01 2.49 16 11 C -0.53 -29.59 8.60 25.60 0.22 -29.37 16 12 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 13 C 0.03 1.50 5.47 84.65 0.46 1.97 16 14 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 15 Si 0.93 42.42 27.24 68.60 1.87 44.29 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.24 -10.00 6.26 99.48 0.62 -9.37 16 19 C -0.05 -2.09 4.93 -19.87 -0.10 -2.19 16 20 C -0.12 -4.90 9.28 22.27 0.21 -4.70 16 21 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 22 C -0.14 -4.14 10.05 22.27 0.22 -3.92 16 23 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 24 C -0.15 -5.82 9.67 22.27 0.22 -5.60 16 25 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 27 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 28 H 0.04 1.26 7.29 -2.38 -0.02 1.24 16 29 H 0.08 1.60 8.12 -2.38 -0.02 1.58 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 2.21 8.06 -2.39 -0.02 2.19 16 32 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 33 H 0.09 3.41 7.95 -2.39 -0.02 3.39 16 34 H 0.04 1.72 8.00 -2.39 -0.02 1.70 16 35 H 0.33 15.02 7.87 -89.70 -0.71 14.31 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.10 4.26 7.42 -2.91 -0.02 4.23 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 41 H 0.11 4.13 8.00 -2.91 -0.02 4.11 16 Total: -1.00 -66.83 346.94 0.61 -66.22 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.22 Total: 34.57 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 5.96 Total: -37.88 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -7.44 Total: -107.19 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.87 Total: 44.29 kcal Total: -66.83 0.61 -66.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717756600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.776 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds