Wall clock time and date at job start Mon Mar 30 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48499 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46632 * 299.99567 * 3 2 1 6 6 H 1.48494 * 109.47342 * 59.99442 * 3 2 1 7 7 C 1.37871 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00119 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99580 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46729 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47047 * 64.58697 * 12 11 10 14 14 C 1.46845 * 111.00273 * 199.92706 * 13 12 11 15 15 C 1.53038 * 109.52592 * 174.15890 * 14 13 12 16 16 C 1.53120 * 109.27512 * 59.17990 * 15 14 13 17 17 O 1.42896 * 109.52075 * 62.25265 * 16 15 14 18 18 C 1.53009 * 109.52051 * 182.43706 * 16 15 14 19 19 C 1.52993 * 109.47072 * 179.97438 * 18 16 15 20 20 N 1.46899 * 109.47169 * 180.02562 * 19 18 16 21 21 C 1.53119 * 109.16257 * 302.34455 * 16 15 14 22 22 C 1.46852 * 111.00294 * 75.71812 * 13 12 11 23 23 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46804 * 59.99849 * 9 7 2 25 25 H 1.09000 * 109.46967 * 300.00161 * 9 7 2 26 26 H 1.09002 * 109.47302 * 60.00254 * 11 10 9 27 27 H 1.08993 * 109.47236 * 299.99494 * 11 10 9 28 28 H 1.08999 * 109.47381 * 304.58455 * 12 11 10 29 29 H 1.09000 * 109.46964 * 184.57998 * 12 11 10 30 30 H 1.09004 * 109.46216 * 54.14272 * 14 13 12 31 31 H 1.08997 * 109.46434 * 294.17605 * 14 13 12 32 32 H 1.09000 * 109.50350 * 299.23942 * 15 14 13 33 33 H 1.08998 * 109.50271 * 179.11919 * 15 14 13 34 34 H 0.96710 * 114.00003 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47190 * 300.00914 * 18 16 15 36 36 H 1.09001 * 109.46519 * 60.00463 * 18 16 15 37 37 H 1.09003 * 109.47064 * 300.00636 * 19 18 16 38 38 H 1.09005 * 109.46961 * 60.00295 * 19 18 16 39 39 H 1.00903 * 111.00179 * 56.04481 * 20 19 18 40 40 H 1.00897 * 110.99869 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.49884 * 177.59493 * 21 16 15 42 42 H 1.08995 * 109.50184 * 297.71470 * 21 16 15 43 43 H 1.08998 * 109.46081 * 65.82373 * 22 13 12 44 44 H 1.08999 * 109.45933 * 305.85550 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9561 0.0020 13 7 3.4139 -5.8813 1.2535 14 6 4.7166 -6.5446 1.1141 15 6 5.5423 -6.3219 2.3832 16 6 4.7847 -6.8916 3.5857 17 8 4.6154 -8.3007 3.4194 18 6 5.5772 -6.6181 4.8656 19 6 4.8189 -7.1871 6.0664 20 7 5.5795 -6.9240 7.2953 21 6 3.4125 -6.2188 3.6798 22 6 2.6485 -6.4445 2.3731 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 0.9461 -4.9826 -0.8894 27 1 0.9442 -4.9823 0.8905 28 1 3.3182 -5.7999 -0.8436 29 1 2.1820 -6.9379 -0.0804 30 1 5.2468 -6.1273 0.2579 31 1 4.5656 -7.6132 0.9619 32 1 5.7055 -5.2540 2.5285 33 1 6.5030 -6.8274 2.2856 34 1 4.1424 -8.7285 4.1464 35 1 6.5560 -7.0925 4.7953 36 1 5.7029 -5.5427 4.9922 37 1 3.8403 -6.7122 6.1363 38 1 4.6927 -8.2625 5.9400 39 1 5.7652 -5.9379 7.4015 40 1 5.0992 -7.2909 8.1032 41 1 2.8516 -6.6508 4.5085 42 1 3.5421 -5.1494 3.8455 43 1 2.5072 -7.5136 2.2150 44 1 1.6766 -5.9545 2.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718007930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:10 Heat of formation + Delta-G solvation = -105.104645 kcal Electronic energy + Delta-G solvation = -21881.489063 eV Core-core repulsion = 18640.178836 eV Total energy + Delta-G solvation = -3241.310227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.96915 -37.34156 -36.00120 -34.88757 -32.84968 -32.30071 -30.89980 -29.76990 -27.72474 -26.44223 -23.88530 -23.32690 -22.24212 -21.40340 -20.73895 -19.78432 -16.87861 -16.44487 -16.32528 -16.00457 -15.54928 -15.10205 -14.97658 -14.69034 -14.29413 -14.23472 -14.13858 -13.85580 -13.11068 -13.09717 -12.83069 -12.25968 -12.13403 -11.98970 -11.59509 -11.46364 -11.34825 -11.22714 -11.11815 -11.06380 -10.74806 -10.70572 -10.38328 -10.16705 -9.99430 -9.73360 -9.03426 -9.01057 -8.73940 -8.07490 -7.94354 -6.06033 -4.06639 3.31850 3.38149 3.45313 3.98543 4.11719 4.19693 4.39878 4.55431 4.69348 4.75919 4.92661 4.96800 5.11895 5.23449 5.29718 5.30491 5.44876 5.47727 5.55453 5.63379 5.69321 5.73331 5.80130 5.86708 5.96256 5.99718 6.04230 6.13231 6.14766 6.22690 6.32840 6.37198 6.74628 7.04869 7.17598 7.35990 7.37700 7.50630 7.51141 7.86449 8.23356 8.69753 9.09222 9.58191 11.05761 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.003882 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.943386 B = 7211.895956 C = 7991.315272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.070 3.930 12 C 0.062 3.938 13 N -0.523 5.523 14 C 0.061 3.939 15 C -0.100 4.100 16 C 0.136 3.864 17 O -0.557 6.557 18 C -0.143 4.143 19 C 0.055 3.945 20 N -0.852 5.852 21 C -0.142 4.142 22 C 0.060 3.940 23 H 0.262 0.738 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.369 0.631 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.342 0.658 40 H 0.341 0.659 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -16.742 10.151 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.009 4.009 12 C -0.066 4.066 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.137 4.137 16 C 0.094 3.906 17 O -0.363 6.363 18 C -0.181 4.181 19 C -0.075 4.075 20 N -0.382 5.382 21 C -0.180 4.180 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.216 0.784 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.707 -16.424 9.354 20.810 hybrid contribution -1.405 0.539 0.710 1.664 sum 7.302 -15.885 10.064 20.172 Atomic orbital electron populations 1.69981 1.06096 1.26885 1.51098 1.24950 0.94951 0.99389 0.95341 0.86306 0.80092 0.82719 0.77538 1.19460 1.20911 1.20930 1.21114 0.94114 0.89372 1.50034 0.91492 1.20163 0.88880 0.84003 0.95009 1.87936 1.34603 1.12356 1.94994 1.22220 0.93857 0.86261 0.98528 1.22113 0.96308 0.96035 0.92124 1.61800 1.03217 1.55831 1.03976 1.21983 0.90423 0.96562 0.97697 1.21573 0.97797 1.01471 0.92895 1.21241 0.94172 0.80778 0.94360 1.86565 1.80102 1.20598 1.49035 1.22238 1.00250 1.02026 0.93590 1.21869 0.94856 1.00586 0.90222 1.58689 1.52620 1.22061 1.04796 1.22303 0.95811 1.02603 0.97272 1.21998 0.97129 0.96940 0.90703 0.92837 0.98094 0.98030 0.94516 0.94832 0.90323 0.94276 0.90781 0.94614 0.89538 0.91121 0.78404 0.90442 0.90880 0.94930 0.91232 0.84547 0.84703 0.91639 0.89803 0.94924 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -15.28 9.43 -34.44 -0.32 -15.61 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.19 5.46 5.69 36.01 0.20 5.67 16 10 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 11 C 0.07 1.34 6.13 37.16 0.23 1.57 16 12 C 0.06 0.98 5.39 -3.82 -0.02 0.96 16 13 N -0.52 -8.17 4.53 -234.67 -1.06 -9.23 16 14 C 0.06 0.83 5.29 -3.83 -0.02 0.81 16 15 C -0.10 -1.20 5.11 -26.65 -0.14 -1.34 16 16 C 0.14 1.44 0.74 -90.49 -0.07 1.37 16 17 O -0.56 -5.88 11.80 -35.23 -0.42 -6.29 16 18 C -0.14 -1.32 4.75 -26.73 -0.13 -1.45 16 19 C 0.06 0.43 6.13 -3.83 -0.02 0.41 16 20 N -0.85 -6.41 9.62 -10.37 -0.10 -6.51 16 21 C -0.14 -1.64 4.66 -26.65 -0.12 -1.76 16 22 C 0.06 0.82 5.15 -3.83 -0.02 0.80 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 25 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.63 6.71 -51.93 -0.35 0.29 16 28 H 0.08 1.24 7.79 -51.93 -0.40 0.84 16 29 H 0.04 0.53 8.00 -51.93 -0.42 0.12 16 30 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 31 H 0.04 0.48 7.76 -51.93 -0.40 0.08 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.37 2.74 7.34 45.56 0.33 3.07 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.25 6.50 -51.93 -0.34 -0.09 16 38 H 0.07 0.50 6.78 -51.93 -0.35 0.15 16 39 H 0.34 2.35 8.99 -39.29 -0.35 2.00 16 40 H 0.34 2.01 9.08 -39.29 -0.36 1.65 16 41 H 0.07 0.62 6.58 -51.93 -0.34 0.28 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.03 0.42 7.76 -51.93 -0.40 0.02 16 44 H 0.07 1.09 6.65 -51.93 -0.35 0.74 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -33.19 343.42 -8.64 -41.83 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.07 Total: 1.43 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.53 Total: -7.07 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.43 Total: -42.37 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.78 Total: -16.12 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.19 -8.64 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718007930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.277 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds