Wall clock time and date at job start Mon Mar 30 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48499 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46632 * 299.99567 * 3 2 1 6 6 H 1.48494 * 109.47342 * 59.99442 * 3 2 1 7 7 C 1.37871 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00119 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99580 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46729 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47047 * 64.58697 * 12 11 10 14 14 C 1.46845 * 111.00273 * 199.92706 * 13 12 11 15 15 C 1.53038 * 109.52592 * 174.15890 * 14 13 12 16 16 C 1.53120 * 109.27512 * 59.17990 * 15 14 13 17 17 O 1.42896 * 109.52075 * 62.25265 * 16 15 14 18 18 C 1.53009 * 109.52051 * 182.43706 * 16 15 14 19 19 C 1.52993 * 109.47072 * 179.97438 * 18 16 15 20 20 N 1.46899 * 109.47169 * 180.02562 * 19 18 16 21 21 C 1.53119 * 109.16257 * 302.34455 * 16 15 14 22 22 C 1.46852 * 111.00294 * 75.71812 * 13 12 11 23 23 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46804 * 59.99849 * 9 7 2 25 25 H 1.09000 * 109.46967 * 300.00161 * 9 7 2 26 26 H 1.09002 * 109.47302 * 60.00254 * 11 10 9 27 27 H 1.08993 * 109.47236 * 299.99494 * 11 10 9 28 28 H 1.08999 * 109.47381 * 304.58455 * 12 11 10 29 29 H 1.09000 * 109.46964 * 184.57998 * 12 11 10 30 30 H 1.09004 * 109.46216 * 54.14272 * 14 13 12 31 31 H 1.08997 * 109.46434 * 294.17605 * 14 13 12 32 32 H 1.09000 * 109.50350 * 299.23942 * 15 14 13 33 33 H 1.08998 * 109.50271 * 179.11919 * 15 14 13 34 34 H 0.96710 * 114.00003 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47190 * 300.00914 * 18 16 15 36 36 H 1.09001 * 109.46519 * 60.00463 * 18 16 15 37 37 H 1.09003 * 109.47064 * 300.00636 * 19 18 16 38 38 H 1.09005 * 109.46961 * 60.00295 * 19 18 16 39 39 H 1.00903 * 111.00179 * 56.04481 * 20 19 18 40 40 H 1.00897 * 110.99869 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.49884 * 177.59493 * 21 16 15 42 42 H 1.08995 * 109.50184 * 297.71470 * 21 16 15 43 43 H 1.08998 * 109.46081 * 65.82373 * 22 13 12 44 44 H 1.08999 * 109.45933 * 305.85550 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8753 0.0013 12 6 2.6483 -5.9561 0.0020 13 7 3.4139 -5.8813 1.2535 14 6 4.7166 -6.5446 1.1141 15 6 5.5423 -6.3219 2.3832 16 6 4.7847 -6.8916 3.5857 17 8 4.6154 -8.3007 3.4194 18 6 5.5772 -6.6181 4.8656 19 6 4.8189 -7.1871 6.0664 20 7 5.5795 -6.9240 7.2953 21 6 3.4125 -6.2188 3.6798 22 6 2.6485 -6.4445 2.3731 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 0.9461 -4.9826 -0.8894 27 1 0.9442 -4.9823 0.8905 28 1 3.3182 -5.7999 -0.8436 29 1 2.1820 -6.9379 -0.0804 30 1 5.2468 -6.1273 0.2579 31 1 4.5656 -7.6132 0.9619 32 1 5.7055 -5.2540 2.5285 33 1 6.5030 -6.8274 2.2856 34 1 4.1424 -8.7285 4.1464 35 1 6.5560 -7.0925 4.7953 36 1 5.7029 -5.5427 4.9922 37 1 3.8403 -6.7122 6.1363 38 1 4.6927 -8.2625 5.9400 39 1 5.7652 -5.9379 7.4015 40 1 5.0992 -7.2909 8.1032 41 1 2.8516 -6.6508 4.5085 42 1 3.5421 -5.1494 3.8455 43 1 2.5072 -7.5136 2.2150 44 1 1.6766 -5.9545 2.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718007930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:09 Heat of formation + Delta-G solvation = -132.609155 kcal Electronic energy + Delta-G solvation = -21882.681748 eV Core-core repulsion = 18640.178836 eV Total energy + Delta-G solvation = -3242.502912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92117 -38.80422 -37.45118 -35.58217 -34.92492 -33.47756 -31.90690 -30.97123 -29.34501 -28.03453 -24.83536 -24.46945 -24.37286 -22.50524 -21.78643 -20.73558 -18.61218 -17.68437 -17.56764 -17.31165 -16.81031 -16.45256 -16.16413 -15.89935 -15.73968 -15.47773 -15.15642 -15.02276 -14.70049 -14.10463 -13.95682 -13.72264 -13.46086 -13.08653 -12.99023 -12.80826 -12.73578 -12.65317 -12.34278 -12.20253 -12.16585 -12.11329 -12.02171 -11.68152 -11.22533 -11.09736 -10.84940 -10.67318 -10.16399 -9.61005 -9.10992 -8.31222 -6.43067 1.39899 1.41487 1.56545 2.35778 2.91865 3.02343 3.24916 3.32893 3.46443 3.73872 3.79756 3.99744 4.09150 4.22323 4.29681 4.32004 4.38635 4.45459 4.48076 4.56897 4.59968 4.60796 4.67722 4.81188 4.86465 4.90543 4.92674 4.98278 5.04081 5.11901 5.16702 5.20232 5.26670 5.36621 5.56783 5.98608 6.17958 6.20059 6.26257 6.55738 6.58547 6.84646 6.88120 7.29404 8.81481 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.003882 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.943386 B = 7211.895956 C = 7991.315272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.394 6.394 11 C 0.061 3.939 12 C 0.070 3.930 13 N -0.549 5.549 14 C 0.065 3.935 15 C -0.102 4.102 16 C 0.145 3.855 17 O -0.565 6.565 18 C -0.135 4.135 19 C 0.058 3.942 20 N -0.860 5.860 21 C -0.137 4.137 22 C 0.060 3.940 23 H 0.270 0.730 24 H -0.017 1.017 25 H -0.019 1.019 26 H 0.045 0.955 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.384 0.616 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.345 0.655 40 H 0.351 0.649 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 -17.144 10.945 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.314 6.314 11 C -0.016 4.016 12 C -0.058 4.058 13 N -0.275 5.275 14 C -0.063 4.063 15 C -0.140 4.140 16 C 0.104 3.896 17 O -0.373 6.373 18 C -0.173 4.173 19 C -0.072 4.072 20 N -0.391 5.391 21 C -0.175 4.175 22 C -0.068 4.068 23 H 0.079 0.921 24 H 0.000 1.000 25 H -0.002 1.002 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.528 -16.862 10.164 21.873 hybrid contribution -1.710 0.571 0.466 1.862 sum 7.819 -16.291 10.630 20.965 Atomic orbital electron populations 1.70082 1.07758 1.28516 1.50806 1.25964 0.95959 1.03371 0.93969 0.85135 0.78654 0.77305 0.78300 1.18886 1.19576 1.19613 1.21407 0.94012 0.90878 1.51826 0.92210 1.19778 0.88674 0.85081 0.93014 1.87894 1.34633 1.13823 1.95021 1.22553 0.95444 0.84635 0.98975 1.22021 0.95504 0.95757 0.92541 1.61759 1.04224 1.57225 1.04259 1.21967 0.89530 0.96433 0.98343 1.21582 0.98356 1.01032 0.93022 1.21037 0.93402 0.80886 0.94252 1.86530 1.80457 1.20202 1.50147 1.22122 0.99875 1.01694 0.93594 1.21829 0.94619 1.01074 0.89707 1.58686 1.52842 1.22441 1.05148 1.22275 0.96620 1.01623 0.97001 1.22019 0.96505 0.97212 0.91030 0.92090 0.99957 1.00162 0.93660 0.94706 0.90436 0.91405 0.91259 0.94192 0.90795 0.90028 0.76660 0.91025 0.91476 0.94685 0.90244 0.84260 0.83610 0.89303 0.91870 0.93747 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.98 45.19 29.54 68.60 2.03 47.22 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.54 -33.36 9.43 25.60 0.24 -33.12 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.23 5.69 71.24 0.41 12.64 16 10 O -0.39 -20.18 10.27 -148.98 -1.53 -21.71 16 11 C 0.06 2.39 6.13 71.98 0.44 2.83 16 12 C 0.07 2.16 5.39 86.31 0.47 2.62 16 13 N -0.55 -16.93 4.53 -896.36 -4.06 -20.99 16 14 C 0.06 1.71 5.29 86.33 0.46 2.16 16 15 C -0.10 -2.39 5.11 30.65 0.16 -2.23 16 16 C 0.15 2.88 0.74 -10.71 -0.01 2.87 16 17 O -0.57 -10.60 11.80 -148.98 -1.76 -12.36 16 18 C -0.13 -2.30 4.75 30.59 0.15 -2.16 16 19 C 0.06 0.79 6.13 86.30 0.53 1.32 16 20 N -0.86 -11.43 9.62 -186.72 -1.80 -13.23 16 21 C -0.14 -3.03 4.66 30.64 0.14 -2.89 16 22 C 0.06 1.59 5.15 86.32 0.44 2.03 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 25 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.34 6.71 -2.39 -0.02 1.33 16 28 H 0.08 2.41 7.79 -2.39 -0.02 2.39 16 29 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 30 H 0.07 1.85 7.93 -2.39 -0.02 1.83 16 31 H 0.04 1.02 7.76 -2.39 -0.02 1.00 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.38 4.60 7.34 -74.05 -0.54 4.05 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 0.47 6.50 -2.39 -0.02 0.45 16 38 H 0.08 0.93 6.78 -2.38 -0.02 0.91 16 39 H 0.34 4.26 8.99 -89.69 -0.81 3.46 16 40 H 0.35 3.47 9.08 -89.70 -0.81 2.66 16 41 H 0.09 1.52 6.58 -2.39 -0.02 1.51 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.07 7.76 -2.39 -0.02 1.05 16 44 H 0.06 1.72 6.65 -2.39 -0.02 1.70 16 Total: -1.00 -70.98 343.42 -4.11 -75.10 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -1.17 Total: 15.81 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.88 Total: -13.13 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -5.57 Total: -90.92 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -3.29 Total: -34.07 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.98 -4.11 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718007930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.513 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds