Wall clock time and date at job start Mon Mar 30 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47346 * 305.00346 * 11 10 9 13 13 N 1.46905 * 109.47150 * 64.99960 * 11 10 9 14 14 C 1.50699 * 109.47337 * 185.00273 * 11 10 9 15 15 O 1.21278 * 120.00013 * 259.99996 * 14 11 10 16 16 N 1.34771 * 120.00148 * 80.00074 * 14 11 10 17 17 C 1.47071 * 136.05588 * 359.62736 * 16 14 11 18 18 C 1.53238 * 88.08503 * 207.20617 * 17 16 14 19 19 C 1.52999 * 114.32972 * 220.47478 * 18 17 16 20 20 O 1.42903 * 109.46672 * 273.75868 * 19 18 17 21 21 C 1.52999 * 114.19674 * 87.72404 * 18 17 16 22 22 O 1.42901 * 109.46651 * 86.30647 * 21 18 17 23 23 C 1.47070 * 136.05818 * 180.02562 * 16 14 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.00898 * 110.99773 * 296.04871 * 13 11 10 30 30 H 1.00898 * 110.99705 * 60.00524 * 13 11 10 31 31 H 1.09001 * 113.46686 * 321.93937 * 17 16 14 32 32 H 1.09002 * 113.46549 * 92.37964 * 17 16 14 33 33 H 1.09001 * 109.47095 * 33.75497 * 19 18 17 34 34 H 1.08997 * 109.47314 * 153.76023 * 19 18 17 35 35 H 0.96698 * 113.99812 * 179.97438 * 20 19 18 36 36 H 1.08999 * 109.47160 * 206.30159 * 21 18 17 37 37 H 1.08998 * 109.47532 * 326.30915 * 21 18 17 38 38 H 0.96699 * 114.00315 * 179.97438 * 22 21 18 39 39 H 1.08997 * 113.46725 * 267.61884 * 23 16 14 40 40 H 1.08998 * 113.46981 * 38.00400 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7885 -5.0068 0.8432 13 7 0.7282 -5.1189 -1.2538 14 6 2.4551 -6.1298 0.1251 15 8 2.7866 -6.7536 -0.8607 16 7 2.9583 -6.4585 1.3313 17 6 2.8166 -5.9627 2.7087 18 6 4.2255 -6.4952 2.9906 19 6 4.3846 -7.1646 4.3572 20 8 4.6883 -6.1733 5.3406 21 6 5.3464 -5.5051 2.6680 22 8 5.5689 -4.6541 3.7942 23 6 3.8962 -7.4663 1.8486 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.0234 -4.4009 -1.3300 30 1 1.3478 -5.1035 -2.0500 31 1 2.7434 -4.8771 2.7738 32 1 2.0381 -6.4730 3.2757 33 1 3.4563 -7.6694 4.6248 34 1 5.1944 -7.8927 4.3131 35 1 4.8026 -6.5269 6.2333 36 1 6.2608 -6.0529 2.4404 37 1 5.0609 -4.9009 1.8069 38 1 6.2682 -3.9997 3.6608 39 1 3.4084 -8.3815 2.1841 40 1 4.7385 -7.6572 1.1836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721422519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:27 Heat of formation + Delta-G solvation = -100.532168 kcal Electronic energy + Delta-G solvation = -21848.669655 eV Core-core repulsion = 18471.724611 eV Total energy + Delta-G solvation = -3376.945044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89953 -38.52134 -36.39913 -35.98321 -35.40637 -32.83805 -31.11553 -29.88641 -27.29918 -26.24374 -26.06638 -25.41831 -23.29460 -20.51289 -19.45683 -18.63336 -17.70762 -17.24690 -16.90259 -16.34196 -15.96696 -15.88936 -15.11674 -14.58015 -14.45006 -14.27888 -13.83382 -13.67765 -13.22962 -12.89480 -12.83018 -12.62154 -12.59798 -12.16744 -11.93115 -11.64253 -11.08638 -10.94044 -10.85089 -10.82622 -10.65345 -10.01572 -9.97827 -9.89017 -9.80813 -9.26575 -9.18964 -8.70354 -8.43372 -8.18856 -6.07604 -4.10560 2.79696 2.92322 3.27076 3.34893 3.38714 3.58637 4.14517 4.36252 4.40364 4.62023 4.84314 5.04438 5.12120 5.17255 5.19378 5.22573 5.28674 5.30464 5.37416 5.47223 5.55253 5.61360 5.70831 5.77536 5.86600 5.94294 6.31169 6.53318 6.87764 7.46352 7.52752 7.61579 7.63443 7.75108 7.80002 7.89053 7.90599 8.31858 8.39430 8.95252 9.54326 11.03454 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.005232 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.537058 B = 5350.643360 C = 6587.511461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.136 4.136 11 C 0.082 3.918 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.557 3.443 15 O -0.537 6.537 16 N -0.649 5.649 17 C 0.112 3.888 18 C -0.098 4.098 19 C 0.101 3.899 20 O -0.536 6.536 21 C 0.108 3.892 22 O -0.539 6.539 23 C 0.120 3.880 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.355 0.645 30 H 0.345 0.655 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.367 0.633 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.370 0.630 39 H 0.089 0.911 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -14.512 9.544 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.033 4.033 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.348 3.652 15 O -0.413 6.413 16 N -0.386 5.386 17 C -0.012 4.012 18 C -0.099 4.099 19 C 0.022 3.978 20 O -0.339 6.339 21 C 0.030 3.970 22 O -0.343 6.343 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.212 0.788 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.216 0.784 39 H 0.107 0.893 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.108 -15.349 8.750 19.440 hybrid contribution 1.215 1.776 0.028 2.152 sum 9.323 -13.573 8.778 18.660 Atomic orbital electron populations 1.69957 1.06025 1.26664 1.50575 1.25006 0.94857 0.99292 0.95123 0.86531 0.80095 0.83710 0.77656 1.19779 1.20958 1.20902 1.21198 0.93008 0.90845 1.50944 0.92721 1.19101 0.93692 0.91103 0.97331 1.22364 0.99905 0.93893 1.01365 1.21389 0.94440 0.92045 0.95446 0.88683 1.58739 1.18483 1.55968 1.03154 1.20533 0.80165 0.84330 0.80207 1.90641 1.60308 1.54297 1.36033 1.49537 1.47296 1.35203 1.06577 1.23078 0.95340 1.02269 0.80467 1.22180 0.96187 0.97060 0.94442 1.21794 0.98626 0.89946 0.87471 1.86849 1.93699 1.34262 1.19109 1.21578 0.95075 0.91470 0.88886 1.86729 1.59922 1.49698 1.37913 1.22830 0.92863 0.92528 0.92138 0.92937 0.96419 0.96329 0.92773 0.92582 0.82918 0.84145 0.89028 0.89536 0.93506 0.93643 0.78813 0.93856 0.93153 0.78396 0.89341 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 4.74 -27.88 -0.13 0.48 16 10 C -0.14 -2.77 4.78 -26.73 -0.13 -2.90 16 11 C 0.08 1.48 3.03 -68.86 -0.21 1.27 16 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 13 N -0.83 -14.97 8.94 -5.65 -0.05 -15.02 16 14 C 0.56 9.96 7.33 -10.99 -0.08 9.88 16 15 O -0.54 -11.13 17.03 5.56 0.09 -11.04 16 16 N -0.65 -9.30 3.50 -185.31 -0.65 -9.95 16 17 C 0.11 1.38 7.51 -8.63 -0.06 1.31 16 18 C -0.10 -1.04 1.24 -154.13 -0.19 -1.23 16 19 C 0.10 0.85 6.63 37.16 0.25 1.10 16 20 O -0.54 -5.38 11.02 -58.99 -0.65 -6.03 16 21 C 0.11 1.25 6.55 37.16 0.24 1.49 16 22 O -0.54 -6.60 11.02 -58.99 -0.65 -7.25 16 23 C 0.12 1.30 7.78 -8.50 -0.07 1.23 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 29 H 0.36 6.35 7.55 -39.29 -0.30 6.05 16 30 H 0.35 6.26 8.58 -39.29 -0.34 5.92 16 31 H 0.09 1.31 7.65 -51.93 -0.40 0.91 16 32 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 33 H 0.05 0.33 7.90 -51.93 -0.41 -0.08 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.37 2.04 9.12 45.56 0.42 2.46 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.68 7.93 -51.93 -0.41 0.26 16 38 H 0.37 3.23 9.12 45.56 0.42 3.64 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -34.84 333.12 -6.65 -41.49 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -4.69 Total: 12.48 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.79 Total: -0.59 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.04 Total: -50.51 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -1.21 Total: -24.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.84 -6.65 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721422519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.040 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds