Wall clock time and date at job start Mon Mar 30 2020 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47346 * 305.00346 * 11 10 9 13 13 N 1.46905 * 109.47150 * 64.99960 * 11 10 9 14 14 C 1.50699 * 109.47337 * 185.00273 * 11 10 9 15 15 O 1.21278 * 120.00013 * 259.99996 * 14 11 10 16 16 N 1.34771 * 120.00148 * 80.00074 * 14 11 10 17 17 C 1.47071 * 136.05588 * 359.62736 * 16 14 11 18 18 C 1.53238 * 88.08503 * 207.20617 * 17 16 14 19 19 C 1.52999 * 114.32972 * 220.47478 * 18 17 16 20 20 O 1.42903 * 109.46672 * 273.75868 * 19 18 17 21 21 C 1.52999 * 114.19674 * 87.72404 * 18 17 16 22 22 O 1.42901 * 109.46651 * 86.30647 * 21 18 17 23 23 C 1.47070 * 136.05818 * 180.02562 * 16 14 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.00898 * 110.99773 * 296.04871 * 13 11 10 30 30 H 1.00898 * 110.99705 * 60.00524 * 13 11 10 31 31 H 1.09001 * 113.46686 * 321.93937 * 17 16 14 32 32 H 1.09002 * 113.46549 * 92.37964 * 17 16 14 33 33 H 1.09001 * 109.47095 * 33.75497 * 19 18 17 34 34 H 1.08997 * 109.47314 * 153.76023 * 19 18 17 35 35 H 0.96698 * 113.99812 * 179.97438 * 20 19 18 36 36 H 1.08999 * 109.47160 * 206.30159 * 21 18 17 37 37 H 1.08998 * 109.47532 * 326.30915 * 21 18 17 38 38 H 0.96699 * 114.00315 * 179.97438 * 22 21 18 39 39 H 1.08997 * 113.46725 * 267.61884 * 23 16 14 40 40 H 1.08998 * 113.46981 * 38.00400 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7885 -5.0068 0.8432 13 7 0.7282 -5.1189 -1.2538 14 6 2.4551 -6.1298 0.1251 15 8 2.7866 -6.7536 -0.8607 16 7 2.9583 -6.4585 1.3313 17 6 2.8166 -5.9627 2.7087 18 6 4.2255 -6.4952 2.9906 19 6 4.3846 -7.1646 4.3572 20 8 4.6883 -6.1733 5.3406 21 6 5.3464 -5.5051 2.6680 22 8 5.5689 -4.6541 3.7942 23 6 3.8962 -7.4663 1.8486 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.0234 -4.4009 -1.3300 30 1 1.3478 -5.1035 -2.0500 31 1 2.7434 -4.8771 2.7738 32 1 2.0381 -6.4730 3.2757 33 1 3.4563 -7.6694 4.6248 34 1 5.1944 -7.8927 4.3131 35 1 4.8026 -6.5269 6.2333 36 1 6.2608 -6.0529 2.4404 37 1 5.0609 -4.9009 1.8069 38 1 6.2682 -3.9997 3.6608 39 1 3.4084 -8.3815 2.1841 40 1 4.7385 -7.6572 1.1836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721422519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:26 Heat of formation + Delta-G solvation = -130.466799 kcal Electronic energy + Delta-G solvation = -21849.967718 eV Core-core repulsion = 18471.724611 eV Total energy + Delta-G solvation = -3378.243107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95657 -39.80857 -37.31202 -37.02875 -36.79592 -34.87166 -32.16958 -31.74422 -28.69226 -27.22982 -26.99605 -26.81462 -24.93244 -22.28449 -20.61484 -19.65426 -18.81527 -18.47823 -18.18039 -17.70129 -17.21665 -16.91034 -16.50036 -16.04774 -15.96339 -15.62824 -15.26646 -14.78677 -14.55043 -14.34378 -13.91156 -13.81745 -13.68179 -13.54501 -13.40281 -13.02676 -12.85242 -12.64350 -12.51989 -11.90083 -11.79740 -11.75691 -11.59349 -11.32677 -10.87894 -10.67600 -10.59511 -10.56153 -9.88001 -9.68407 -8.23887 -6.34682 1.37470 1.38307 1.48465 1.51055 1.70622 2.38133 2.76530 3.09722 3.30803 3.40851 3.59786 3.68426 4.01502 4.03689 4.16382 4.25832 4.34977 4.39085 4.44730 4.48895 4.55160 4.59917 4.63701 4.66911 4.73155 4.84073 4.90876 5.01775 5.10621 5.41540 5.59272 5.76295 6.00695 6.17517 6.41493 6.56167 6.79733 6.98495 7.04934 7.17910 7.34582 8.87356 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.005232 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.537058 B = 5350.643360 C = 6587.511461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.116 4.116 11 C 0.088 3.912 12 H 0.100 0.900 13 N -0.828 5.828 14 C 0.555 3.445 15 O -0.572 6.572 16 N -0.651 5.651 17 C 0.106 3.894 18 C -0.090 4.090 19 C 0.103 3.897 20 O -0.564 6.564 21 C 0.106 3.894 22 O -0.554 6.554 23 C 0.122 3.878 24 H 0.265 0.735 25 H 0.004 0.996 26 H -0.001 1.001 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.354 0.646 30 H 0.345 0.655 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.383 0.617 39 H 0.121 0.879 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.069 -15.411 10.872 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.156 4.156 11 C -0.028 4.028 12 H 0.118 0.882 13 N -0.360 5.360 14 C 0.345 3.655 15 O -0.451 6.451 16 N -0.386 5.386 17 C -0.016 4.016 18 C -0.091 4.091 19 C 0.025 3.975 20 O -0.370 6.370 21 C 0.028 3.972 22 O -0.359 6.359 23 C 0.000 4.000 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.230 0.770 39 H 0.138 0.862 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.239 -16.263 10.135 21.273 hybrid contribution 0.885 2.059 -0.308 2.262 sum 10.124 -14.204 9.827 20.020 Atomic orbital electron populations 1.70065 1.07520 1.27795 1.51261 1.25868 0.95743 1.03003 0.94585 0.85469 0.78970 0.79129 0.77917 1.19028 1.20322 1.20163 1.21593 0.93228 0.92379 1.51039 0.92900 1.18946 0.93911 0.91989 0.95628 1.22075 0.98771 0.93858 1.00856 1.21285 0.94495 0.91289 0.95682 0.88173 1.58752 1.18360 1.55701 1.03165 1.20232 0.80175 0.84079 0.81017 1.90617 1.61653 1.55435 1.37392 1.49558 1.46802 1.35993 1.06280 1.23325 0.97689 1.01161 0.79459 1.22145 0.94361 0.96563 0.96079 1.21834 1.00530 0.89539 0.85622 1.86784 1.93899 1.35685 1.20634 1.21610 0.96337 0.91455 0.87809 1.86696 1.60755 1.50308 1.38177 1.23110 0.92289 0.92864 0.91730 0.92641 0.97733 0.98283 0.93685 0.92536 0.83075 0.84203 0.91573 0.86970 0.91441 0.91490 0.76658 0.91989 0.95953 0.76981 0.86156 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.65 4.74 29.85 0.14 1.79 16 10 C -0.12 -4.84 4.78 30.59 0.15 -4.70 16 11 C 0.09 3.22 3.03 44.17 0.13 3.35 16 12 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 13 N -0.83 -30.28 8.94 -171.79 -1.54 -31.81 16 14 C 0.55 19.73 7.33 87.66 0.64 20.37 16 15 O -0.57 -23.66 17.03 -3.02 -0.05 -23.71 16 16 N -0.65 -17.92 3.50 -858.59 -3.01 -20.93 16 17 C 0.11 2.46 7.51 83.10 0.62 3.09 16 18 C -0.09 -1.72 1.24 -51.94 -0.06 -1.78 16 19 C 0.10 1.38 6.63 71.98 0.48 1.86 16 20 O -0.56 -9.86 11.02 -126.26 -1.39 -11.25 16 21 C 0.11 2.33 6.55 71.98 0.47 2.80 16 22 O -0.55 -12.99 11.02 -126.26 -1.39 -14.38 16 23 C 0.12 2.33 7.78 83.18 0.65 2.97 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.00 0.23 6.87 -2.39 -0.02 0.22 16 26 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.33 7.68 -2.39 -0.02 2.31 16 29 H 0.35 12.96 7.55 -89.70 -0.68 12.28 16 30 H 0.34 12.73 8.58 -89.70 -0.77 11.96 16 31 H 0.07 1.89 7.65 -2.39 -0.02 1.87 16 32 H 0.11 2.05 7.94 -2.39 -0.02 2.03 16 33 H 0.07 0.65 7.90 -2.39 -0.02 0.63 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.39 3.26 9.12 -74.06 -0.68 2.58 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.02 0.60 7.93 -2.39 -0.02 0.59 16 38 H 0.38 6.39 9.12 -74.06 -0.68 5.71 16 39 H 0.12 1.60 8.10 -2.39 -0.02 1.58 16 40 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 Total: -1.00 -74.85 333.12 -2.87 -77.72 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -1.72 Total: 32.99 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 3.91 Total: 0.15 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.26 Total: -107.55 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -2.84 Total: -49.34 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.85 -2.87 -77.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721422519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.745 kcal (2) G-P(sol) polarization free energy of solvation -74.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds