Wall clock time and date at job start Mon Mar 30 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48497 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47098 * 300.00260 * 3 2 1 6 6 H 1.48504 * 109.46645 * 60.00324 * 3 2 1 7 7 C 1.39949 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00519 * 197.86530 * 7 2 1 9 9 C 1.41397 * 119.99316 * 17.86338 * 7 2 1 10 10 C 1.40708 * 120.24851 * 24.39007 * 9 7 2 11 11 C 1.37628 * 119.74898 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24445 * 359.97414 * 11 10 9 13 13 C 1.50694 * 119.74752 * 180.02562 * 12 11 10 14 14 N 1.46894 * 109.47389 * 89.99951 * 13 12 11 15 15 C 1.47705 * 110.99871 * 266.28208 * 14 13 12 16 16 C 1.52326 * 87.61756 * 222.19365 * 15 14 13 17 17 C 1.47711 * 111.00191 * 169.99874 * 14 13 12 18 18 C 1.53499 * 116.05239 * 141.81024 * 16 15 14 19 19 C 1.55201 * 102.58373 * 110.03770 * 18 16 15 20 20 N 1.48643 * 103.40023 * 36.44434 * 19 18 16 21 21 C 1.48229 * 105.89042 * 321.45630 * 20 19 18 22 22 C 1.38640 * 120.50124 * 0.29609 * 12 11 10 23 23 C 1.37620 * 120.24929 * 359.44900 * 22 12 11 24 24 H 0.97003 * 120.00568 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.13051 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.87619 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.47040 * 329.99190 * 13 12 11 28 28 H 1.09005 * 109.46684 * 210.00157 * 13 12 11 29 29 H 1.08996 * 113.52851 * 336.88316 * 15 14 13 30 30 H 1.08997 * 113.52225 * 107.51043 * 15 14 13 31 31 H 1.08993 * 113.52640 * 252.49168 * 17 14 13 32 32 H 1.09001 * 113.52151 * 23.11893 * 17 14 13 33 33 H 1.09001 * 110.79159 * 228.30986 * 18 16 15 34 34 H 1.08999 * 110.78642 * 351.76760 * 18 16 15 35 35 H 1.08996 * 110.63288 * 277.97118 * 19 18 16 36 36 H 1.08993 * 110.63665 * 154.92265 * 19 18 16 37 37 H 1.00902 * 110.99673 * 82.01245 * 20 19 18 38 38 H 1.09000 * 110.04398 * 265.81649 * 21 20 19 39 39 H 1.09005 * 110.04113 * 144.36250 * 21 20 19 40 40 H 1.08000 * 119.87236 * 179.70424 * 22 12 11 41 41 H 1.07995 * 120.12761 * 180.27073 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3767 10 6 0.2211 -2.3615 -1.2125 11 6 -0.4097 -3.5308 -1.5718 12 6 0.0657 -4.7499 -1.1139 13 6 -0.6333 -6.0233 -1.5148 14 7 -0.0421 -6.5360 -2.7579 15 6 -0.7941 -6.0606 -3.9370 16 6 -0.6587 -7.4654 -4.5104 17 6 -0.5324 -7.8973 -3.0552 18 6 -1.8786 -8.0036 -5.2709 19 6 -1.3796 -8.0224 -6.7404 20 7 0.0487 -8.4142 -6.6143 21 6 0.5543 -7.7216 -5.4052 22 6 1.1759 -4.8060 -0.2855 23 6 1.8256 -3.6499 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1512 -1.4129 -1.5701 26 1 -1.2783 -3.4984 -2.2129 27 1 -1.6929 -5.8220 -1.6723 28 1 -0.5180 -6.7653 -0.7246 29 1 -1.8230 -5.7795 -3.7126 30 1 -0.2646 -5.3024 -4.5139 31 1 0.2156 -8.6737 -2.8952 32 1 -1.4885 -8.1276 -2.5852 33 1 -2.1309 -9.0095 -4.9352 34 1 -2.7304 -7.3326 -5.1602 35 1 -1.4683 -7.0328 -7.1888 36 1 -1.9303 -8.7603 -7.3236 37 1 0.1424 -9.4148 -6.5237 38 1 1.0195 -6.7760 -5.6835 39 1 1.2744 -8.3542 -4.8861 40 1 1.5347 -5.7609 0.0692 41 1 2.6928 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724095043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:10 Heat of formation + Delta-G solvation = 54.720010 kcal Electronic energy + Delta-G solvation = -20331.663253 eV Core-core repulsion = 17404.592462 eV Total energy + Delta-G solvation = -2927.070790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84416 -37.68176 -36.62192 -33.81997 -31.42045 -29.62785 -29.25895 -28.74642 -26.38206 -25.98816 -24.01595 -22.32613 -21.46831 -20.90662 -19.74788 -18.53538 -17.26349 -16.74160 -15.64325 -15.32397 -15.09331 -14.66594 -14.39913 -13.94806 -13.87171 -13.48400 -13.17612 -12.87988 -12.46934 -12.43268 -11.92072 -11.84967 -11.60460 -11.49744 -11.31050 -11.16719 -11.05795 -10.86265 -10.55991 -10.46772 -10.25320 -10.21100 -9.55710 -9.36198 -9.09620 -8.78701 -8.51937 -7.41152 -7.25748 -6.73908 -4.31562 2.75945 3.08335 3.12182 3.14234 3.19508 3.95133 4.05174 4.16880 4.23614 4.62228 4.74652 4.87451 5.03492 5.17228 5.32258 5.38957 5.45437 5.52431 5.65116 5.68751 5.71736 5.81059 5.86060 5.93165 6.00113 6.07375 6.15626 6.27169 6.36636 6.40442 6.55953 6.64139 6.98323 7.10355 7.18084 7.31583 7.37742 7.42161 7.65309 7.91553 8.09169 8.16994 8.33790 8.67623 8.93124 9.01532 10.20774 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.032156 B = 0.003556 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.555242 B = 7871.618015 C = 8143.248419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.165 4.165 11 C -0.092 4.092 12 C -0.202 4.202 13 C 0.085 3.915 14 N -0.457 5.457 15 C 0.021 3.979 16 C -0.120 4.120 17 C 0.006 3.994 18 C -0.145 4.145 19 C 0.044 3.956 20 N -0.677 5.677 21 C 0.075 3.925 22 C -0.073 4.073 23 C -0.227 4.227 24 H 0.279 0.721 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.334 0.666 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 -12.520 -8.696 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.185 4.185 11 C -0.111 4.111 12 C -0.204 4.204 13 C -0.042 4.042 14 N -0.178 5.178 15 C -0.108 4.108 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.184 4.184 19 C -0.086 4.086 20 N -0.303 5.303 21 C -0.055 4.055 22 C -0.092 4.092 23 C -0.247 4.247 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.563 -11.750 -9.085 15.274 hybrid contribution -1.121 0.242 0.997 1.520 sum -4.684 -11.507 -8.088 14.825 Atomic orbital electron populations 1.69838 1.07591 1.28997 1.35605 1.25904 0.94696 1.01281 0.92247 0.86299 0.81077 0.81061 0.78503 1.18390 1.19722 1.20055 1.19625 0.98147 0.91327 1.40204 0.90472 1.17616 0.91058 0.92002 0.88402 1.21268 0.99376 0.96624 1.01219 1.20469 0.98383 0.92862 0.99367 1.18753 1.01578 0.92117 1.07942 1.21305 0.95121 0.95964 0.91817 1.69153 1.44854 1.01880 1.01955 1.23732 0.97657 0.95832 0.93588 1.22549 0.96548 0.97984 0.95082 1.23730 0.99459 0.95186 0.93923 1.22951 0.97671 1.01278 0.96510 1.23135 0.88268 1.01862 0.95326 1.62867 1.16461 1.12428 1.38579 1.22310 0.94954 1.00299 0.87911 1.20305 0.95083 0.96203 0.97560 1.20957 1.03667 0.92971 1.07084 0.91025 0.86589 0.90128 0.94735 0.91962 0.91682 0.89746 0.90228 0.91902 0.91305 0.90722 0.90126 0.91037 0.85147 0.89751 0.91041 0.89700 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.80 10.95 55.55 0.61 -20.19 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.11 3.04 5.58 -106.82 -0.60 2.45 16 10 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 11 C -0.09 -2.17 9.67 -39.66 -0.38 -2.55 16 12 C -0.20 -4.47 5.49 -104.33 -0.57 -5.04 16 13 C 0.09 1.51 4.93 -4.98 -0.02 1.49 16 14 N -0.46 -7.35 6.30 -246.20 -1.55 -8.90 16 15 C 0.02 0.30 6.98 -6.90 -0.05 0.25 16 16 C -0.12 -1.38 1.21 -155.01 -0.19 -1.56 16 17 C 0.01 0.08 6.99 -6.90 -0.05 0.03 16 18 C -0.14 -1.35 6.49 -25.31 -0.16 -1.51 16 19 C 0.04 0.39 7.57 -1.69 -0.01 0.38 16 20 N -0.68 -6.85 7.53 -110.22 -0.83 -7.68 16 21 C 0.07 0.86 7.08 -3.15 -0.02 0.84 16 22 C -0.07 -1.68 9.67 -39.66 -0.38 -2.06 16 23 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 25 H 0.12 3.17 6.15 -52.49 -0.32 2.84 16 26 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.03 0.59 7.25 -51.93 -0.38 0.21 16 28 H 0.06 1.05 8.02 -51.93 -0.42 0.64 16 29 H 0.07 0.91 7.27 -51.93 -0.38 0.53 16 30 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 31 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 33 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 34 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.33 2.82 8.92 -39.29 -0.35 2.47 16 38 H 0.08 1.11 7.81 -51.93 -0.41 0.70 16 39 H 0.07 0.80 7.80 -51.93 -0.41 0.40 16 40 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -27.94 329.67 -11.81 -39.75 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.38 Total: 7.34 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -3.59 Total: -29.16 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -1.77 Total: -36.77 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.94 -11.81 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724095043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.471 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds