Wall clock time and date at job start Mon Mar 30 2020 05:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48497 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47098 * 300.00260 * 3 2 1 6 6 H 1.48504 * 109.46645 * 60.00324 * 3 2 1 7 7 C 1.39949 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00519 * 197.86530 * 7 2 1 9 9 C 1.41397 * 119.99316 * 17.86338 * 7 2 1 10 10 C 1.40708 * 120.24851 * 24.39007 * 9 7 2 11 11 C 1.37628 * 119.74898 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24445 * 359.97414 * 11 10 9 13 13 C 1.50694 * 119.74752 * 180.02562 * 12 11 10 14 14 N 1.46894 * 109.47389 * 89.99951 * 13 12 11 15 15 C 1.47705 * 110.99871 * 266.28208 * 14 13 12 16 16 C 1.52326 * 87.61756 * 222.19365 * 15 14 13 17 17 C 1.47711 * 111.00191 * 169.99874 * 14 13 12 18 18 C 1.53499 * 116.05239 * 141.81024 * 16 15 14 19 19 C 1.55201 * 102.58373 * 110.03770 * 18 16 15 20 20 N 1.48643 * 103.40023 * 36.44434 * 19 18 16 21 21 C 1.48229 * 105.89042 * 321.45630 * 20 19 18 22 22 C 1.38640 * 120.50124 * 0.29609 * 12 11 10 23 23 C 1.37620 * 120.24929 * 359.44900 * 22 12 11 24 24 H 0.97003 * 120.00568 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.13051 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.87619 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.47040 * 329.99190 * 13 12 11 28 28 H 1.09005 * 109.46684 * 210.00157 * 13 12 11 29 29 H 1.08996 * 113.52851 * 336.88316 * 15 14 13 30 30 H 1.08997 * 113.52225 * 107.51043 * 15 14 13 31 31 H 1.08993 * 113.52640 * 252.49168 * 17 14 13 32 32 H 1.09001 * 113.52151 * 23.11893 * 17 14 13 33 33 H 1.09001 * 110.79159 * 228.30986 * 18 16 15 34 34 H 1.08999 * 110.78642 * 351.76760 * 18 16 15 35 35 H 1.08996 * 110.63288 * 277.97118 * 19 18 16 36 36 H 1.08993 * 110.63665 * 154.92265 * 19 18 16 37 37 H 1.00902 * 110.99673 * 82.01245 * 20 19 18 38 38 H 1.09000 * 110.04398 * 265.81649 * 21 20 19 39 39 H 1.09005 * 110.04113 * 144.36250 * 21 20 19 40 40 H 1.08000 * 119.87236 * 179.70424 * 22 12 11 41 41 H 1.07995 * 120.12761 * 180.27073 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3767 10 6 0.2211 -2.3615 -1.2125 11 6 -0.4097 -3.5308 -1.5718 12 6 0.0657 -4.7499 -1.1139 13 6 -0.6333 -6.0233 -1.5148 14 7 -0.0421 -6.5360 -2.7579 15 6 -0.7941 -6.0606 -3.9370 16 6 -0.6587 -7.4654 -4.5104 17 6 -0.5324 -7.8973 -3.0552 18 6 -1.8786 -8.0036 -5.2709 19 6 -1.3796 -8.0224 -6.7404 20 7 0.0487 -8.4142 -6.6143 21 6 0.5543 -7.7216 -5.4052 22 6 1.1759 -4.8060 -0.2855 23 6 1.8256 -3.6499 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1512 -1.4129 -1.5701 26 1 -1.2783 -3.4984 -2.2129 27 1 -1.6929 -5.8220 -1.6723 28 1 -0.5180 -6.7653 -0.7246 29 1 -1.8230 -5.7795 -3.7126 30 1 -0.2646 -5.3024 -4.5139 31 1 0.2156 -8.6737 -2.8952 32 1 -1.4885 -8.1276 -2.5852 33 1 -2.1309 -9.0095 -4.9352 34 1 -2.7304 -7.3326 -5.1602 35 1 -1.4683 -7.0328 -7.1888 36 1 -1.9303 -8.7603 -7.3236 37 1 0.1424 -9.4148 -6.5237 38 1 1.0195 -6.7760 -5.6835 39 1 1.2744 -8.3542 -4.8861 40 1 1.5347 -5.7609 0.0692 41 1 2.6928 -3.6962 0.7243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724095043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:09 Heat of formation + Delta-G solvation = 36.199593 kcal Electronic energy + Delta-G solvation = -20332.466358 eV Core-core repulsion = 17404.592462 eV Total energy + Delta-G solvation = -2927.873896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88794 -39.42963 -37.71494 -35.67184 -33.00218 -31.20637 -30.67727 -29.97870 -27.87818 -27.05798 -25.55398 -23.41508 -22.83511 -22.54090 -21.42978 -19.48944 -19.22361 -17.64540 -17.16399 -16.68972 -16.34839 -16.09002 -15.67788 -15.53283 -15.12871 -14.77026 -14.60721 -14.11500 -13.86952 -13.79372 -13.54410 -13.33824 -13.01809 -12.81004 -12.71418 -12.46729 -12.39211 -12.23202 -11.95765 -11.83356 -11.64829 -11.35632 -11.26011 -11.16659 -10.98476 -9.75718 -9.55664 -9.34925 -9.18716 -8.64271 -6.33123 0.94456 1.15258 1.36711 1.48910 1.52399 2.20316 2.67775 3.11102 3.27395 3.31826 3.72295 3.79002 4.05677 4.09008 4.16316 4.29240 4.37847 4.46952 4.49995 4.55738 4.59308 4.63063 4.71438 4.73960 4.80906 4.92293 4.99747 5.02956 5.08636 5.15400 5.21168 5.24937 5.30837 5.46635 5.48292 5.71438 5.75371 5.96125 6.10469 6.19068 6.27205 6.39751 6.50423 6.70588 6.94536 7.04421 8.33147 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.032156 B = 0.003556 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.555242 B = 7871.618015 C = 8143.248419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.190 4.190 11 C -0.096 4.096 12 C -0.191 4.191 13 C 0.091 3.909 14 N -0.482 5.482 15 C 0.015 3.985 16 C -0.107 4.107 17 C 0.014 3.986 18 C -0.137 4.137 19 C 0.044 3.956 20 N -0.684 5.684 21 C 0.076 3.924 22 C -0.078 4.078 23 C -0.244 4.244 24 H 0.287 0.713 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.346 0.654 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -14.291 -9.406 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.209 4.209 11 C -0.115 4.115 12 C -0.192 4.192 13 C -0.036 4.036 14 N -0.204 5.204 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.176 4.176 19 C -0.085 4.085 20 N -0.311 5.311 21 C -0.054 4.054 22 C -0.096 4.096 23 C -0.264 4.264 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.162 0.838 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.377 -13.551 -9.801 17.287 hybrid contribution -0.913 0.639 1.164 1.611 sum -5.290 -12.912 -8.637 16.411 Atomic orbital electron populations 1.69884 1.09000 1.30401 1.36032 1.26755 0.95503 1.04495 0.91194 0.85167 0.79381 0.76184 0.79004 1.18293 1.18828 1.18885 1.19849 0.98282 0.92713 1.42510 0.90947 1.17955 0.91986 0.93046 0.89401 1.21239 1.00277 0.96989 1.02428 1.20707 0.98707 0.92727 0.99337 1.19256 1.00592 0.93612 1.05760 1.21232 0.95090 0.94033 0.93281 1.69046 1.45703 1.04273 1.01379 1.23778 0.97336 0.97079 0.93185 1.22435 0.97713 0.95722 0.95018 1.23774 1.00301 0.93250 0.94134 1.22922 0.96510 1.02103 0.96070 1.23169 0.87763 1.02084 0.95506 1.62795 1.17305 1.13287 1.37724 1.22196 0.95115 0.99489 0.88566 1.20633 0.95084 0.96562 0.97335 1.21170 1.04290 0.93356 1.07583 0.90204 0.88392 0.88333 0.93702 0.90583 0.91119 0.91903 0.89305 0.90368 0.89561 0.90397 0.91189 0.88773 0.83769 0.92119 0.90751 0.87037 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.59 10.95 21.83 0.24 -44.35 16 2 C 0.03 1.82 5.14 85.26 0.44 2.26 16 3 Si 0.98 39.47 29.60 68.60 2.03 41.50 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.50 -28.43 9.05 23.46 0.21 -28.22 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.44 5.58 -21.29 -0.12 4.32 16 10 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 11 C -0.10 -4.58 9.67 22.22 0.21 -4.36 16 12 C -0.19 -8.27 5.49 -19.68 -0.11 -8.38 16 13 C 0.09 3.03 4.93 85.56 0.42 3.46 16 14 N -0.48 -14.57 6.30 -932.84 -5.88 -20.45 16 15 C 0.02 0.42 6.98 83.87 0.59 1.01 16 16 C -0.11 -2.21 1.21 -52.50 -0.06 -2.28 16 17 C 0.01 0.31 6.99 83.86 0.59 0.89 16 18 C -0.14 -2.11 6.49 31.52 0.20 -1.90 16 19 C 0.04 0.68 7.57 86.72 0.66 1.33 16 20 N -0.68 -12.33 7.53 -502.63 -3.78 -16.11 16 21 C 0.08 1.64 7.08 86.01 0.61 2.25 16 22 C -0.08 -3.54 9.67 22.22 0.21 -3.33 16 23 C -0.24 -12.64 9.80 22.73 0.22 -12.41 16 24 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 25 H 0.10 5.63 6.15 -2.91 -0.02 5.61 16 26 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 27 H 0.04 1.40 7.25 -2.39 -0.02 1.39 16 28 H 0.08 2.33 8.02 -2.38 -0.02 2.31 16 29 H 0.07 1.84 7.27 -2.39 -0.02 1.82 16 30 H 0.06 1.96 7.92 -2.39 -0.02 1.94 16 31 H 0.09 1.81 7.92 -2.39 -0.02 1.79 16 32 H 0.08 1.51 7.91 -2.39 -0.02 1.50 16 33 H 0.09 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.08 1.19 7.87 -2.39 -0.02 1.17 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.35 4.86 8.92 -89.69 -0.80 4.06 16 38 H 0.06 1.59 7.81 -2.39 -0.02 1.58 16 39 H 0.07 1.54 7.80 -2.38 -0.02 1.52 16 40 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.09 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -62.13 329.67 -2.90 -65.03 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.22 Total: 29.95 kcal Atomic # 6 Polarization: -59.84 SS G_CDS: 4.27 Total: -55.57 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -9.42 Total: -80.91 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -62.13 -2.90 -65.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724095043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.229 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds