Wall clock time and date at job start Mon Mar 30 2020 05:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99824 * 2 1 4 4 H 1.09001 * 109.61452 * 330.21817 * 3 2 1 5 5 C 1.53172 * 109.54648 * 90.44350 * 3 2 1 6 6 C 1.53092 * 109.16489 * 62.88711 * 5 3 2 7 7 O 1.42901 * 109.41358 * 57.60918 * 6 5 3 8 8 C 1.42904 * 114.09907 * 298.83992 * 7 6 5 9 9 C 1.53090 * 109.40921 * 61.16026 * 8 7 6 10 10 H 1.08999 * 109.57761 * 62.32821 * 9 8 7 11 11 N 1.46901 * 109.52058 * 182.48560 * 9 8 7 12 12 C 1.46902 * 110.99844 * 274.68567 * 11 9 8 13 13 C 1.50702 * 109.47027 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 12 17 17 C 1.50694 * 109.47550 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00446 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99703 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00230 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47041 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46896 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.47040 * 240.00259 * 21 19 17 25 25 H 1.09006 * 109.47340 * 300.00402 * 1 2 3 26 26 H 1.09001 * 109.47555 * 60.00244 * 1 2 3 27 27 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.52616 * 182.79296 * 5 3 2 29 29 H 1.09007 * 109.52374 * 302.97778 * 5 3 2 30 30 H 1.08996 * 109.48154 * 177.59387 * 6 5 3 31 31 H 1.09001 * 109.47492 * 297.61356 * 6 5 3 32 32 H 1.08997 * 109.48012 * 301.18421 * 8 7 6 33 33 H 1.08999 * 109.47924 * 181.14335 * 8 7 6 34 34 H 1.00895 * 111.00207 * 38.63910 * 11 9 8 35 35 H 1.09004 * 109.47131 * 60.00016 * 12 11 9 36 36 H 1.08994 * 109.47471 * 299.99766 * 12 11 9 37 37 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 38 38 H 1.08998 * 109.47134 * 300.00670 * 16 15 13 39 39 H 1.09002 * 109.46857 * 59.99862 * 16 15 13 40 40 H 0.97000 * 119.99614 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0022 -0.5100 5 6 2.2288 1.7691 1.4434 6 6 3.2253 0.8297 2.1275 7 8 4.4485 0.8151 1.3887 8 6 4.3135 0.3451 0.0459 9 6 3.3606 1.2652 -0.7217 10 1 3.7801 2.2702 -0.7661 11 7 3.1735 0.7507 -2.0849 12 6 4.2388 1.2260 -2.9778 13 6 4.0141 0.6785 -4.3638 14 8 3.0601 -0.0367 -4.5860 15 7 4.8698 0.9887 -5.3578 16 6 4.6480 0.4615 -6.7065 17 6 5.7381 0.9529 -7.6236 18 1 6.5184 1.5936 -7.2401 19 6 5.7400 0.5838 -8.9521 20 7 4.7901 -0.1968 -9.4189 21 14 7.0917 1.1925 -10.0887 22 1 8.0329 2.0494 -9.3239 23 1 7.8260 0.0307 -10.6510 24 1 6.4908 1.9808 -11.1946 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.6259 2.7843 1.4438 29 1 1.2804 1.7479 1.9805 30 1 3.4174 1.1797 3.1418 31 1 2.8098 -0.1774 2.1631 32 1 3.9123 -0.6683 0.0541 33 1 5.2895 0.3461 -0.4393 34 1 3.1225 -0.2570 -2.0873 35 1 5.2046 0.8847 -2.6050 36 1 4.2263 2.3153 -3.0107 37 1 5.6326 1.5609 -5.1802 38 1 4.6618 -0.6280 -6.6775 39 1 3.6808 0.8028 -7.0755 40 1 4.7912 -0.4561 -10.3536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724889797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:12 Heat of formation + Delta-G solvation = -130.125394 kcal Electronic energy + Delta-G solvation = -21228.812329 eV Core-core repulsion = 17850.584027 eV Total energy + Delta-G solvation = -3378.228303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19214 -38.73995 -37.24466 -35.56448 -34.10904 -32.34064 -32.21806 -30.17137 -27.64258 -26.74502 -25.52059 -24.89752 -22.96387 -22.11180 -20.44643 -19.62814 -17.51710 -16.75313 -16.49736 -16.35893 -15.82438 -15.66872 -15.27657 -15.19967 -14.94995 -14.53386 -14.40444 -13.63771 -13.52513 -13.24600 -12.78567 -12.58543 -12.40404 -12.29453 -11.96153 -11.79791 -11.52391 -11.43476 -11.24282 -10.94739 -10.89989 -10.74300 -10.31744 -9.98594 -9.63139 -9.37602 -9.02598 -8.73559 -8.32109 -7.85927 -6.16497 -4.23331 3.23565 3.30530 3.33575 3.38274 3.52145 3.61658 3.87133 4.29225 4.45675 4.49080 4.65222 4.72271 4.82007 4.98353 5.12609 5.19164 5.19672 5.27155 5.33267 5.37683 5.45632 5.49617 5.55335 5.57220 5.58969 5.64526 5.76313 5.86960 6.72834 7.00794 7.07577 7.31982 7.38251 7.45802 7.52922 7.67992 7.97633 8.64213 8.79327 9.12564 9.43498 10.93771 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.003140 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.220733 B = 8916.131971 C = 9420.084540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.098 3.902 4 H 0.073 0.927 5 C -0.178 4.178 6 C 0.065 3.935 7 O -0.382 6.382 8 C 0.035 3.965 9 C 0.060 3.940 10 H 0.096 0.904 11 N -0.656 5.656 12 C 0.037 3.963 13 C 0.496 3.504 14 O -0.543 6.543 15 N -0.714 5.714 16 C 0.250 3.750 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.358 0.642 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.390 0.610 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 4.242 22.611 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C 0.039 3.961 4 H 0.091 0.909 5 C -0.216 4.216 6 C -0.012 4.012 7 O -0.300 6.300 8 C -0.044 4.044 9 C -0.051 4.051 10 H 0.115 0.885 11 N -0.290 5.290 12 C -0.096 4.096 13 C 0.280 3.720 14 O -0.420 6.420 15 N -0.364 5.364 16 C 0.130 3.870 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.792 3.998 22.140 23.002 hybrid contribution 1.291 0.228 -0.481 1.396 sum -3.501 4.226 21.659 22.343 Atomic orbital electron populations 1.22749 0.81056 1.02643 0.99780 1.87870 1.19694 1.27113 1.94872 1.22162 0.94608 0.85643 0.93643 0.90889 1.22722 1.00798 1.00872 0.97239 1.22478 0.84814 0.99117 0.94809 1.87910 1.31160 1.86690 1.24193 1.23366 1.00411 0.97753 0.82872 1.22326 0.94153 1.00029 0.88564 0.88549 1.60131 1.45739 1.17567 1.05516 1.21937 0.93701 1.01611 0.92316 1.20323 0.83451 0.81932 0.86279 1.90673 1.29885 1.37961 1.83526 1.46445 1.27613 1.50849 1.11457 1.19091 0.97245 0.94825 0.75881 1.21270 1.10589 1.31925 0.94316 0.91853 1.24963 0.96233 0.94832 0.98052 1.69988 1.32500 1.34508 1.15279 0.86360 0.81424 0.78594 0.80520 1.19629 1.20811 1.20796 0.94676 0.93521 0.89806 0.90108 0.90541 0.89143 0.92446 0.92006 0.89090 0.82068 0.92718 0.88504 0.77782 0.95603 0.95541 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.83 101.05 1.09 1.41 16 2 O -0.38 -4.28 9.10 -35.23 -0.32 -4.60 16 3 C 0.10 1.01 2.62 -26.55 -0.07 0.94 16 4 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 5 C -0.18 -1.45 5.83 -26.59 -0.16 -1.60 16 6 C 0.06 0.58 6.69 37.21 0.25 0.83 16 7 O -0.38 -4.30 10.77 -35.23 -0.38 -4.68 16 8 C 0.03 0.38 5.95 37.20 0.22 0.60 16 9 C 0.06 0.66 2.45 -67.57 -0.17 0.50 16 10 H 0.10 0.98 7.80 -51.93 -0.41 0.58 16 11 N -0.66 -9.05 5.70 -107.84 -0.61 -9.66 16 12 C 0.04 0.51 5.97 -4.97 -0.03 0.48 16 13 C 0.50 9.81 7.87 -10.98 -0.09 9.73 16 14 O -0.54 -13.12 16.20 5.55 0.09 -13.03 16 15 N -0.71 -14.92 5.55 -61.47 -0.34 -15.27 16 16 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 17 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 18 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.03 0.25 7.87 -51.93 -0.41 -0.15 16 26 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.53 7.87 -51.92 -0.41 0.12 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 32 H 0.06 0.72 7.77 -51.93 -0.40 0.31 16 33 H 0.09 0.94 7.54 -51.93 -0.39 0.54 16 34 H 0.36 5.40 8.12 -39.29 -0.32 5.08 16 35 H 0.05 0.65 7.51 -51.93 -0.39 0.26 16 36 H 0.10 1.18 8.06 -51.93 -0.42 0.76 16 37 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -32.83 330.99 -6.61 -39.44 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.36 Total: 6.34 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 0.61 Total: 6.09 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.22 Total: -50.38 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.61 Total: -22.32 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.83 -6.61 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724889797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.687 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds