Wall clock time and date at job start Mon Mar 30 2020 05:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99824 * 2 1 4 4 H 1.09001 * 109.61452 * 330.21817 * 3 2 1 5 5 C 1.53172 * 109.54648 * 90.44350 * 3 2 1 6 6 C 1.53092 * 109.16489 * 62.88711 * 5 3 2 7 7 O 1.42901 * 109.41358 * 57.60918 * 6 5 3 8 8 C 1.42904 * 114.09907 * 298.83992 * 7 6 5 9 9 C 1.53090 * 109.40921 * 61.16026 * 8 7 6 10 10 H 1.08999 * 109.57761 * 62.32821 * 9 8 7 11 11 N 1.46901 * 109.52058 * 182.48560 * 9 8 7 12 12 C 1.46902 * 110.99844 * 274.68567 * 11 9 8 13 13 C 1.50702 * 109.47027 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 12 17 17 C 1.50694 * 109.47550 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00446 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99703 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00230 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47041 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46896 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.47040 * 240.00259 * 21 19 17 25 25 H 1.09006 * 109.47340 * 300.00402 * 1 2 3 26 26 H 1.09001 * 109.47555 * 60.00244 * 1 2 3 27 27 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.52616 * 182.79296 * 5 3 2 29 29 H 1.09007 * 109.52374 * 302.97778 * 5 3 2 30 30 H 1.08996 * 109.48154 * 177.59387 * 6 5 3 31 31 H 1.09001 * 109.47492 * 297.61356 * 6 5 3 32 32 H 1.08997 * 109.48012 * 301.18421 * 8 7 6 33 33 H 1.08999 * 109.47924 * 181.14335 * 8 7 6 34 34 H 1.00895 * 111.00207 * 38.63910 * 11 9 8 35 35 H 1.09004 * 109.47131 * 60.00016 * 12 11 9 36 36 H 1.08994 * 109.47471 * 299.99766 * 12 11 9 37 37 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 38 38 H 1.08998 * 109.47134 * 300.00670 * 16 15 13 39 39 H 1.09002 * 109.46857 * 59.99862 * 16 15 13 40 40 H 0.97000 * 119.99614 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0022 -0.5100 5 6 2.2288 1.7691 1.4434 6 6 3.2253 0.8297 2.1275 7 8 4.4485 0.8151 1.3887 8 6 4.3135 0.3451 0.0459 9 6 3.3606 1.2652 -0.7217 10 1 3.7801 2.2702 -0.7661 11 7 3.1735 0.7507 -2.0849 12 6 4.2388 1.2260 -2.9778 13 6 4.0141 0.6785 -4.3638 14 8 3.0601 -0.0367 -4.5860 15 7 4.8698 0.9887 -5.3578 16 6 4.6480 0.4615 -6.7065 17 6 5.7381 0.9529 -7.6236 18 1 6.5184 1.5936 -7.2401 19 6 5.7400 0.5838 -8.9521 20 7 4.7901 -0.1968 -9.4189 21 14 7.0917 1.1925 -10.0887 22 1 8.0329 2.0494 -9.3239 23 1 7.8260 0.0307 -10.6510 24 1 6.4908 1.9808 -11.1946 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.6259 2.7843 1.4438 29 1 1.2804 1.7479 1.9805 30 1 3.4174 1.1797 3.1418 31 1 2.8098 -0.1774 2.1631 32 1 3.9123 -0.6683 0.0541 33 1 5.2895 0.3461 -0.4393 34 1 3.1225 -0.2570 -2.0873 35 1 5.2046 0.8847 -2.6050 36 1 4.2263 2.3153 -3.0107 37 1 5.6326 1.5609 -5.1802 38 1 4.6618 -0.6280 -6.6775 39 1 3.6808 0.8028 -7.0755 40 1 4.7912 -0.4561 -10.3536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724889797.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:12 Heat of formation + Delta-G solvation = -157.607556 kcal Electronic energy + Delta-G solvation = -21230.004045 eV Core-core repulsion = 17850.584027 eV Total energy + Delta-G solvation = -3379.420019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07017 -40.32008 -38.04002 -36.69424 -36.00383 -34.33591 -32.99311 -31.23067 -29.43670 -27.51465 -26.87925 -25.67807 -24.49780 -23.38598 -21.51987 -21.05968 -19.06076 -17.97342 -17.43459 -17.39145 -17.09367 -16.96248 -16.52051 -16.48868 -16.07217 -15.93175 -15.48784 -15.08021 -14.56886 -14.44929 -14.04451 -13.98222 -13.73818 -13.37372 -13.22663 -13.08381 -12.88394 -12.73805 -12.56463 -12.21711 -12.18951 -12.01129 -11.51769 -11.45268 -10.85886 -10.81269 -10.66279 -10.38643 -9.81697 -9.31803 -8.29033 -6.45573 1.43637 1.44730 1.58262 1.79511 2.27381 2.46258 2.84059 2.89907 3.06012 3.28751 3.71498 3.81781 3.96983 3.99276 4.07444 4.22853 4.33349 4.43483 4.46375 4.48999 4.56151 4.70441 4.72315 4.80853 4.87040 4.89301 5.06521 5.11185 5.14858 5.24882 5.49685 5.67656 5.82991 5.86005 6.20104 6.26610 6.30249 6.66237 6.94915 7.24149 7.53035 8.83461 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.003140 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.220733 B = 8916.131971 C = 9420.084540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.397 6.397 3 C 0.093 3.907 4 H 0.069 0.931 5 C -0.169 4.169 6 C 0.060 3.940 7 O -0.394 6.394 8 C 0.039 3.961 9 C 0.063 3.937 10 H 0.111 0.889 11 N -0.671 5.671 12 C 0.053 3.947 13 C 0.492 3.508 14 O -0.593 6.593 15 N -0.708 5.708 16 C 0.267 3.733 17 C -0.555 4.555 18 H 0.085 0.915 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.279 1.279 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.409 0.591 38 H -0.014 1.014 39 H -0.015 1.015 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 6.170 24.085 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.316 6.316 3 C 0.035 3.965 4 H 0.087 0.913 5 C -0.207 4.207 6 C -0.017 4.017 7 O -0.312 6.312 8 C -0.039 4.039 9 C -0.047 4.047 10 H 0.129 0.871 11 N -0.304 5.304 12 C -0.078 4.078 13 C 0.279 3.721 14 O -0.473 6.473 15 N -0.359 5.359 16 C 0.144 3.856 17 C -0.592 4.592 18 H 0.103 0.897 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.175 1.175 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.245 0.755 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.137 5.966 23.671 24.612 hybrid contribution 0.697 -0.411 -0.870 1.188 sum -2.440 5.555 22.800 23.594 Atomic orbital electron populations 1.22840 0.80165 1.03204 1.00275 1.87847 1.20784 1.27938 1.95058 1.22261 0.94054 0.85223 0.94989 0.91274 1.22671 1.01411 1.01011 0.95636 1.22649 0.84290 0.99066 0.95649 1.87894 1.32459 1.86652 1.24203 1.23276 1.00550 0.97004 0.83100 1.22397 0.94906 1.00460 0.86923 0.87080 1.60143 1.46083 1.16968 1.07172 1.21873 0.95178 1.02732 0.88064 1.21419 0.81922 0.80592 0.88130 1.90650 1.31926 1.40101 1.84655 1.46171 1.28819 1.51182 1.09747 1.18515 0.95602 0.92515 0.79000 1.21664 1.10865 1.32026 0.94678 0.89694 1.26088 0.98858 0.94717 1.00085 1.70151 1.34927 1.36053 1.15926 0.85099 0.78014 0.78135 0.77887 1.17516 1.20523 1.20503 0.92563 0.94572 0.89335 0.88987 0.89008 0.87096 0.93292 0.93340 0.88436 0.83250 0.89589 0.85697 0.75528 0.99592 0.99668 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.83 113.37 1.23 1.78 16 2 O -0.40 -8.78 9.10 -148.98 -1.36 -10.13 16 3 C 0.09 1.77 2.62 30.71 0.08 1.85 16 4 H 0.07 1.35 7.79 -2.39 -0.02 1.33 16 5 C -0.17 -2.33 5.83 30.68 0.18 -2.15 16 6 C 0.06 0.94 6.69 72.01 0.48 1.42 16 7 O -0.39 -8.07 10.77 -148.98 -1.60 -9.68 16 8 C 0.04 0.79 5.95 72.01 0.43 1.22 16 9 C 0.06 1.28 2.45 45.00 0.11 1.39 16 10 H 0.11 1.91 7.80 -2.39 -0.02 1.90 16 11 N -0.67 -17.82 5.70 -495.10 -2.82 -20.64 16 12 C 0.05 1.37 5.97 85.56 0.51 1.88 16 13 C 0.49 19.49 7.87 87.66 0.69 20.18 16 14 O -0.59 -29.72 16.20 -3.04 -0.05 -29.77 16 15 N -0.71 -29.60 5.55 -466.79 -2.59 -32.19 16 16 C 0.27 14.73 5.43 85.63 0.46 15.20 16 17 C -0.55 -30.18 9.28 25.60 0.24 -29.94 16 18 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 21 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.06 0.73 7.87 -2.38 -0.02 0.71 16 26 H 0.04 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.09 1.00 7.87 -2.38 -0.02 0.98 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 32 H 0.05 1.10 7.77 -2.39 -0.02 1.08 16 33 H 0.10 1.79 7.54 -2.39 -0.02 1.78 16 34 H 0.35 10.52 8.12 -89.70 -0.73 9.79 16 35 H 0.09 1.74 7.51 -2.38 -0.02 1.73 16 36 H 0.13 2.59 8.06 -2.39 -0.02 2.57 16 37 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 38 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -73.86 330.99 -1.69 -75.55 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.45 Total: 25.40 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.87 Total: 13.40 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -5.13 Total: -109.13 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -3.01 Total: -49.58 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.86 -1.69 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724889797.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.059 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds