Wall clock time and date at job start Mon Mar 30 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00360 * 2 1 4 4 C 1.53004 * 109.47073 * 287.64409 * 3 2 1 5 5 O 1.42903 * 109.46860 * 63.93488 * 4 3 2 6 6 C 1.42900 * 113.99488 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46847 * 180.02562 * 6 5 4 8 8 H 1.08008 * 120.00006 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00326 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99415 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00329 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46892 * 90.00204 * 11 9 7 13 13 H 1.48495 * 109.47052 * 210.00459 * 11 9 7 14 14 H 1.48498 * 109.46948 * 330.00417 * 11 9 7 15 15 C 1.46908 * 111.00069 * 123.95615 * 2 1 3 16 16 C 1.52999 * 109.54179 * 57.25901 * 15 2 1 17 17 N 1.46904 * 109.47004 * 54.16136 * 16 15 2 18 18 C 1.53179 * 109.53742 * 296.99730 * 15 2 1 19 19 C 1.53093 * 109.15982 * 183.14977 * 18 15 2 20 20 O 1.42911 * 109.41369 * 57.60735 * 19 18 15 21 21 C 1.42896 * 114.09945 * 298.84260 * 20 19 18 22 22 C 1.53095 * 109.41689 * 61.15657 * 21 20 19 23 23 H 1.09001 * 109.46912 * 67.01396 * 1 2 3 24 24 H 1.08995 * 109.47354 * 187.01336 * 1 2 3 25 25 H 1.08994 * 109.46616 * 307.01771 * 1 2 3 26 26 H 1.09007 * 109.47281 * 167.64598 * 3 2 1 27 27 H 1.08996 * 109.47348 * 47.64400 * 3 2 1 28 28 H 1.09003 * 109.47140 * 303.93434 * 4 3 2 29 29 H 1.08997 * 109.47320 * 183.93715 * 4 3 2 30 30 H 1.09004 * 109.47457 * 299.99532 * 6 5 4 31 31 H 1.09000 * 109.47548 * 60.00300 * 6 5 4 32 32 H 0.97006 * 119.99513 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.46695 * 174.15774 * 16 15 2 34 34 H 1.08996 * 109.47641 * 294.15764 * 16 15 2 35 35 H 1.00902 * 111.00144 * 56.04511 * 17 16 15 36 36 H 1.00906 * 110.99681 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.52354 * 303.05531 * 18 15 2 38 38 H 1.08999 * 109.52781 * 63.24809 * 18 15 2 39 39 H 1.08999 * 109.48316 * 297.62654 * 19 18 15 40 40 H 1.08999 * 109.49089 * 177.59447 * 19 18 15 41 41 H 1.08998 * 109.48162 * 301.17606 * 21 20 19 42 42 H 1.08994 * 109.48908 * 181.14794 * 21 20 19 43 43 H 1.08997 * 109.52277 * 182.48957 * 22 21 20 44 44 H 1.08999 * 109.57141 * 62.32496 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.7701 2.0042 -1.3747 5 8 0.3673 2.1149 -1.6238 6 6 0.0460 2.6964 -2.8890 7 6 -1.4515 2.7645 -3.0446 8 1 -2.0935 2.3999 -2.2563 9 6 -2.0020 3.2924 -4.1932 10 7 -1.2202 3.7360 -5.1532 11 14 -3.8580 3.3762 -4.3864 12 1 -4.3534 4.6700 -3.8515 13 1 -4.2114 3.2672 -5.8245 14 1 -4.4847 2.2581 -3.6365 15 6 1.9955 -0.7661 1.1376 16 6 1.4509 -2.1950 1.0883 17 7 1.7474 -2.7871 -0.2230 18 6 1.5673 -0.0974 2.4476 19 6 2.1853 -0.8566 3.6246 20 8 3.6073 -0.8754 3.4838 21 6 4.0678 -1.5301 2.3000 22 6 3.5254 -0.7981 1.0697 23 1 -0.3633 0.4013 -0.9461 24 1 -0.3634 -1.0199 0.1255 25 1 -0.3632 0.6187 0.8205 26 1 3.0630 1.3507 0.2199 27 1 1.4794 1.9587 0.7594 28 1 2.2272 1.3790 -2.1418 29 1 2.2225 2.9956 -1.3969 30 1 0.4626 3.7022 -2.9430 31 1 0.4671 2.0853 -3.6873 32 1 -1.6074 4.1070 -5.9615 33 1 1.9217 -2.7904 1.8706 34 1 0.3722 -2.1784 1.2439 35 1 2.7368 -2.7553 -0.4187 36 1 1.3979 -3.7319 -0.2805 37 1 1.9131 0.9362 2.4589 38 1 0.4806 -0.1199 2.5299 39 1 1.8076 -1.8791 3.6362 40 1 1.9189 -0.3601 4.5577 41 1 3.7148 -2.5614 2.2943 42 1 5.1575 -1.5189 2.2787 43 1 3.8391 -1.3216 0.1667 44 1 3.9106 0.2214 1.0522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725060136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:22 Heat of formation + Delta-G solvation = -77.886330 kcal Electronic energy + Delta-G solvation = -22638.126513 eV Core-core repulsion = 19397.996561 eV Total energy + Delta-G solvation = -3240.129952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60096 -37.56775 -36.30531 -34.02833 -32.63684 -31.51843 -31.39069 -29.21014 -26.98504 -25.79018 -25.11032 -23.61712 -22.66489 -22.17584 -21.20904 -18.29632 -16.97622 -16.43540 -16.37732 -16.12591 -15.50205 -15.40554 -15.03431 -14.81858 -14.44472 -14.13246 -13.93259 -13.52982 -13.24154 -13.17882 -12.76933 -12.45531 -12.27325 -11.74734 -11.74449 -11.46973 -11.40235 -11.10353 -10.97677 -10.79981 -10.70882 -10.58124 -10.34701 -10.18274 -9.88421 -9.73143 -9.01963 -8.71978 -8.51106 -8.07232 -7.77454 -6.06053 -4.07263 3.32842 3.37839 3.43094 3.65528 4.05145 4.38908 4.45513 4.57071 4.65723 4.80681 4.90084 4.92577 5.04214 5.09106 5.27291 5.30575 5.36437 5.37814 5.43345 5.55600 5.57413 5.75525 5.79298 5.85778 5.99945 6.03581 6.13573 6.15698 6.18911 6.32363 6.48903 6.96174 7.01935 7.13936 7.21868 7.44864 7.49961 7.53950 7.59023 7.83994 8.22207 8.66058 9.06572 9.57389 11.05570 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.003893 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.362377 B = 7190.530125 C = 7332.280965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.499 5.499 3 C 0.052 3.948 4 C 0.069 3.931 5 O -0.389 6.389 6 C 0.195 3.805 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.112 3.888 16 C 0.073 3.927 17 N -0.827 5.827 18 C -0.186 4.186 19 C 0.064 3.936 20 O -0.383 6.383 21 C 0.060 3.940 22 C -0.149 4.149 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.013 0.987 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.001 0.999 31 H 0.005 0.995 32 H 0.263 0.737 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.338 0.662 36 H 0.334 0.666 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.742 -12.233 15.476 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.222 5.222 3 C -0.076 4.076 4 C -0.009 4.009 5 O -0.309 6.309 6 C 0.120 3.880 7 C -0.549 4.549 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.021 3.979 16 C -0.059 4.059 17 N -0.357 5.357 18 C -0.226 4.226 19 C -0.013 4.013 20 O -0.302 6.302 21 C -0.017 4.017 22 C -0.187 4.187 23 H 0.125 0.875 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.403 -11.772 14.800 21.119 hybrid contribution -0.665 -0.090 0.634 0.923 sum 8.738 -11.861 15.434 21.337 Atomic orbital electron populations 1.22650 0.85957 0.99975 1.03649 1.62128 1.09135 1.12056 1.38857 1.22320 0.99253 0.89008 0.96979 1.22228 0.85866 0.97312 0.95488 1.87843 1.19675 1.83059 1.40353 1.20159 0.96243 0.91808 0.79760 1.21050 0.90871 1.40373 1.02655 0.91704 1.24938 0.98794 0.95322 0.95437 1.69970 1.35033 1.41516 1.07294 0.86372 0.84597 0.78514 0.77203 1.20587 1.21125 1.19650 1.21104 0.94120 0.93725 0.88923 1.21917 1.00611 0.93412 0.89916 1.58443 1.21642 1.24785 1.30854 1.22923 1.01897 1.01415 0.96347 1.22563 0.80995 0.99389 0.98377 1.87922 1.21495 1.78809 1.41978 1.22650 0.99460 0.94986 0.84609 1.22364 0.95091 1.02600 0.98650 0.87514 0.92464 0.96831 0.90437 0.94567 0.93682 0.94617 0.98081 0.97689 0.92745 0.95798 0.90832 0.84806 0.85368 0.90495 0.90459 0.93245 0.89098 0.93429 0.88870 0.89883 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.18 60.07 0.49 0.91 16 2 N -0.50 -7.55 4.25 -226.95 -0.96 -8.51 16 3 C 0.05 0.82 4.51 -3.83 -0.02 0.80 16 4 C 0.07 1.33 6.26 37.16 0.23 1.56 16 5 O -0.39 -9.31 7.25 -35.23 -0.26 -9.56 16 6 C 0.19 5.40 5.69 36.01 0.20 5.60 16 7 C -0.51 -15.11 9.43 -34.44 -0.32 -15.43 16 8 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 11 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.11 1.31 0.22 -131.41 -0.03 1.28 16 16 C 0.07 0.77 4.57 -3.82 -0.02 0.75 16 17 N -0.83 -8.86 9.33 -10.37 -0.10 -8.95 16 18 C -0.19 -2.09 4.25 -26.59 -0.11 -2.20 16 19 C 0.06 0.62 6.57 37.21 0.24 0.87 16 20 O -0.38 -4.24 10.77 -35.23 -0.38 -4.62 16 21 C 0.06 0.54 6.57 37.21 0.24 0.79 16 22 C -0.15 -1.54 4.64 -26.59 -0.12 -1.66 16 23 H 0.11 2.27 5.66 -51.93 -0.29 1.97 16 24 H 0.06 0.89 5.83 -51.93 -0.30 0.59 16 25 H 0.01 0.22 6.88 -51.93 -0.36 -0.14 16 26 H 0.08 1.05 5.51 -51.93 -0.29 0.76 16 27 H 0.04 0.59 6.99 -51.93 -0.36 0.23 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.02 0.22 5.05 -51.93 -0.26 -0.04 16 34 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 35 H 0.34 3.30 7.25 -39.29 -0.28 3.02 16 36 H 0.33 2.95 9.08 -39.29 -0.36 2.59 16 37 H 0.08 0.95 6.66 -51.93 -0.35 0.60 16 38 H 0.08 0.89 6.91 -51.93 -0.36 0.53 16 39 H 0.05 0.43 6.74 -51.93 -0.35 0.08 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.39 6.48 -51.93 -0.34 0.05 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.83 6.59 -51.93 -0.34 0.49 16 44 H 0.08 0.87 5.92 -51.93 -0.31 0.57 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -31.75 325.07 -7.35 -39.10 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.96 Total: 2.32 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 0.70 Total: -5.20 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.32 Total: -43.97 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.63 Total: -14.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.75 -7.35 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725060136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.787 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds