Wall clock time and date at job start Mon Mar 30 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00360 * 2 1 4 4 C 1.53004 * 109.47073 * 287.64409 * 3 2 1 5 5 O 1.42903 * 109.46860 * 63.93488 * 4 3 2 6 6 C 1.42900 * 113.99488 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46847 * 180.02562 * 6 5 4 8 8 H 1.08008 * 120.00006 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00326 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99415 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00329 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46892 * 90.00204 * 11 9 7 13 13 H 1.48495 * 109.47052 * 210.00459 * 11 9 7 14 14 H 1.48498 * 109.46948 * 330.00417 * 11 9 7 15 15 C 1.46908 * 111.00069 * 123.95615 * 2 1 3 16 16 C 1.52999 * 109.54179 * 57.25901 * 15 2 1 17 17 N 1.46904 * 109.47004 * 54.16136 * 16 15 2 18 18 C 1.53179 * 109.53742 * 296.99730 * 15 2 1 19 19 C 1.53093 * 109.15982 * 183.14977 * 18 15 2 20 20 O 1.42911 * 109.41369 * 57.60735 * 19 18 15 21 21 C 1.42896 * 114.09945 * 298.84260 * 20 19 18 22 22 C 1.53095 * 109.41689 * 61.15657 * 21 20 19 23 23 H 1.09001 * 109.46912 * 67.01396 * 1 2 3 24 24 H 1.08995 * 109.47354 * 187.01336 * 1 2 3 25 25 H 1.08994 * 109.46616 * 307.01771 * 1 2 3 26 26 H 1.09007 * 109.47281 * 167.64598 * 3 2 1 27 27 H 1.08996 * 109.47348 * 47.64400 * 3 2 1 28 28 H 1.09003 * 109.47140 * 303.93434 * 4 3 2 29 29 H 1.08997 * 109.47320 * 183.93715 * 4 3 2 30 30 H 1.09004 * 109.47457 * 299.99532 * 6 5 4 31 31 H 1.09000 * 109.47548 * 60.00300 * 6 5 4 32 32 H 0.97006 * 119.99513 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.46695 * 174.15774 * 16 15 2 34 34 H 1.08996 * 109.47641 * 294.15764 * 16 15 2 35 35 H 1.00902 * 111.00144 * 56.04511 * 17 16 15 36 36 H 1.00906 * 110.99681 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.52354 * 303.05531 * 18 15 2 38 38 H 1.08999 * 109.52781 * 63.24809 * 18 15 2 39 39 H 1.08999 * 109.48316 * 297.62654 * 19 18 15 40 40 H 1.08999 * 109.49089 * 177.59447 * 19 18 15 41 41 H 1.08998 * 109.48162 * 301.17606 * 21 20 19 42 42 H 1.08994 * 109.48908 * 181.14794 * 21 20 19 43 43 H 1.08997 * 109.52277 * 182.48957 * 22 21 20 44 44 H 1.08999 * 109.57141 * 62.32496 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.7701 2.0042 -1.3747 5 8 0.3673 2.1149 -1.6238 6 6 0.0460 2.6964 -2.8890 7 6 -1.4515 2.7645 -3.0446 8 1 -2.0935 2.3999 -2.2563 9 6 -2.0020 3.2924 -4.1932 10 7 -1.2202 3.7360 -5.1532 11 14 -3.8580 3.3762 -4.3864 12 1 -4.3534 4.6700 -3.8515 13 1 -4.2114 3.2672 -5.8245 14 1 -4.4847 2.2581 -3.6365 15 6 1.9955 -0.7661 1.1376 16 6 1.4509 -2.1950 1.0883 17 7 1.7474 -2.7871 -0.2230 18 6 1.5673 -0.0974 2.4476 19 6 2.1853 -0.8566 3.6246 20 8 3.6073 -0.8754 3.4838 21 6 4.0678 -1.5301 2.3000 22 6 3.5254 -0.7981 1.0697 23 1 -0.3633 0.4013 -0.9461 24 1 -0.3634 -1.0199 0.1255 25 1 -0.3632 0.6187 0.8205 26 1 3.0630 1.3507 0.2199 27 1 1.4794 1.9587 0.7594 28 1 2.2272 1.3790 -2.1418 29 1 2.2225 2.9956 -1.3969 30 1 0.4626 3.7022 -2.9430 31 1 0.4671 2.0853 -3.6873 32 1 -1.6074 4.1070 -5.9615 33 1 1.9217 -2.7904 1.8706 34 1 0.3722 -2.1784 1.2439 35 1 2.7368 -2.7553 -0.4187 36 1 1.3979 -3.7319 -0.2805 37 1 1.9131 0.9362 2.4589 38 1 0.4806 -0.1199 2.5299 39 1 1.8076 -1.8791 3.6362 40 1 1.9189 -0.3601 4.5577 41 1 3.7148 -2.5614 2.2943 42 1 5.1575 -1.5189 2.2787 43 1 3.8391 -1.3216 0.1667 44 1 3.9106 0.2214 1.0522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725060136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:21 Heat of formation + Delta-G solvation = -103.106017 kcal Electronic energy + Delta-G solvation = -22639.220121 eV Core-core repulsion = 19397.996561 eV Total energy + Delta-G solvation = -3241.223560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53161 -38.93596 -37.73969 -35.25767 -34.68158 -32.51597 -32.20720 -30.72115 -29.01982 -26.87839 -26.22835 -24.50703 -24.39051 -23.58981 -22.54902 -19.24912 -18.58883 -18.05194 -17.42765 -17.11609 -17.05620 -16.58287 -16.39239 -16.08595 -15.81471 -15.31501 -15.25643 -14.76810 -14.52243 -14.42179 -14.14509 -13.56536 -13.39547 -13.29397 -13.05569 -12.88777 -12.79184 -12.66155 -12.56996 -12.39060 -12.12634 -11.89821 -11.63169 -11.52012 -11.19592 -11.10327 -10.82383 -10.57102 -10.11541 -9.31313 -9.00581 -8.30253 -6.42147 1.39739 1.42764 1.54744 2.35540 2.88972 2.97861 3.03667 3.25441 3.57599 3.73323 3.82389 4.00489 4.09603 4.11548 4.21547 4.27387 4.34466 4.46363 4.53646 4.56091 4.59737 4.67630 4.69163 4.76760 4.82030 4.87603 4.91148 4.92197 4.96709 5.07776 5.20616 5.23146 5.25656 5.55210 5.56994 5.99209 6.20922 6.22374 6.29477 6.48104 6.57326 6.75261 6.85731 7.29723 8.82317 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.003893 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.362377 B = 7190.530125 C = 7332.280965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.508 5.508 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.394 6.394 6 C 0.210 3.790 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.264 1.264 15 C 0.110 3.890 16 C 0.077 3.923 17 N -0.844 5.844 18 C -0.183 4.183 19 C 0.067 3.933 20 O -0.399 6.399 21 C 0.062 3.938 22 C -0.145 4.145 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.011 0.989 26 H 0.105 0.895 27 H 0.031 0.969 28 H 0.039 0.961 29 H 0.042 0.958 30 H -0.019 1.019 31 H -0.019 1.019 32 H 0.270 0.730 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.344 0.656 36 H 0.345 0.655 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 -13.436 16.744 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.230 5.230 3 C -0.065 4.065 4 C -0.017 4.017 5 O -0.314 6.314 6 C 0.135 3.865 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.805 3.195 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.188 1.188 15 C 0.020 3.980 16 C -0.054 4.054 17 N -0.376 5.376 18 C -0.223 4.223 19 C -0.010 4.010 20 O -0.318 6.318 21 C -0.015 4.015 22 C -0.183 4.183 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.029 0.971 26 H 0.123 0.877 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.060 0.940 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.332 -12.991 16.087 22.686 hybrid contribution -0.533 0.254 0.253 0.643 sum 8.799 -12.737 16.341 22.509 Atomic orbital electron populations 1.22378 0.87409 1.00279 1.00950 1.62053 1.07905 1.11797 1.41276 1.22229 1.00853 0.89220 0.94169 1.22536 0.83421 0.98084 0.97615 1.87865 1.22710 1.82582 1.38201 1.19758 0.95649 0.90300 0.80797 1.21360 0.91715 1.41551 1.03353 0.92053 1.25954 1.04502 0.94167 0.94624 1.70084 1.37562 1.41640 1.07861 0.85203 0.77571 0.79065 0.77689 1.19345 1.19985 1.18831 1.21237 0.95129 0.93853 0.87756 1.21852 1.00127 0.92774 0.90619 1.58422 1.22270 1.25777 1.31100 1.22868 1.01663 1.00846 0.96879 1.22608 0.80471 1.00019 0.97933 1.87914 1.22001 1.79193 1.42679 1.22753 1.00426 0.95171 0.83150 1.22342 0.93726 1.02448 0.99820 0.91978 0.91196 0.97056 0.87692 0.95121 0.94223 0.93973 1.00154 1.00145 0.92142 0.93586 0.91798 0.84178 0.84163 0.91884 0.90976 0.91805 0.88044 0.92026 0.87238 0.89399 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 8.18 127.69 1.04 2.34 16 2 N -0.51 -15.16 4.25 -871.94 -3.70 -18.87 16 3 C 0.06 1.97 4.51 86.31 0.39 2.36 16 4 C 0.06 2.39 6.26 71.98 0.45 2.85 16 5 O -0.39 -19.59 7.25 -148.98 -1.08 -20.67 16 6 C 0.21 12.17 5.69 71.24 0.41 12.58 16 7 C -0.54 -32.90 9.43 25.60 0.24 -32.65 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.01 0.34 5.46 84.65 0.46 0.80 16 10 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 11 Si 0.98 45.17 29.54 68.60 2.03 47.20 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 C 0.11 2.41 0.22 3.64 0.00 2.41 16 16 C 0.08 1.47 4.57 86.30 0.39 1.87 16 17 N -0.84 -16.62 9.33 -186.71 -1.74 -18.36 16 18 C -0.18 -3.84 4.25 30.68 0.13 -3.70 16 19 C 0.07 1.13 6.57 72.01 0.47 1.61 16 20 O -0.40 -7.74 10.77 -148.98 -1.60 -9.34 16 21 C 0.06 0.93 6.57 72.01 0.47 1.41 16 22 C -0.15 -2.68 4.64 30.68 0.14 -2.54 16 23 H 0.06 2.74 5.66 -2.39 -0.01 2.72 16 24 H 0.07 2.18 5.83 -2.39 -0.01 2.17 16 25 H 0.01 0.38 6.88 -2.39 -0.02 0.36 16 26 H 0.11 2.71 5.51 -2.38 -0.01 2.70 16 27 H 0.03 1.00 6.99 -2.39 -0.02 0.98 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 31 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 32 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 33 H 0.05 0.69 5.05 -2.39 -0.01 0.68 16 34 H 0.06 1.35 6.47 -2.39 -0.02 1.34 16 35 H 0.34 6.03 7.25 -89.69 -0.65 5.38 16 36 H 0.35 5.46 9.08 -89.69 -0.81 4.65 16 37 H 0.06 1.50 6.66 -2.39 -0.02 1.48 16 38 H 0.07 1.58 6.91 -2.39 -0.02 1.56 16 39 H 0.06 0.91 6.74 -2.39 -0.02 0.89 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 0.78 6.48 -2.39 -0.02 0.76 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.55 6.59 -2.39 -0.02 1.54 16 44 H 0.07 1.41 5.92 -2.39 -0.01 1.39 16 Total: -1.00 -69.20 325.07 -1.66 -70.85 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.45 Total: 16.83 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.61 Total: -10.69 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.16 Total: -94.19 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -2.68 Total: -30.01 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.20 -1.66 -70.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725060136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.253 kcal (2) G-P(sol) polarization free energy of solvation -69.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds