Wall clock time and date at job start Mon Mar 30 2020 04:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47156 * 299.99942 * 3 2 1 6 6 H 1.48502 * 109.47195 * 59.99559 * 3 2 1 7 7 C 1.37876 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99943 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47218 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99877 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00026 * 5.10148 * 12 11 10 14 14 N 1.34776 * 120.00260 * 185.11042 * 12 11 10 15 15 C 1.47156 * 120.98113 * 5.42177 * 14 12 11 16 16 C 1.53298 * 108.38209 * 230.56054 * 15 14 12 17 17 O 1.42956 * 109.22382 * 307.69764 * 16 15 14 18 18 C 1.42967 * 114.16714 * 62.58396 * 17 16 15 19 19 C 1.47156 * 120.98013 * 185.45037 * 14 12 11 20 20 H 1.09003 * 109.67838 * 249.15700 * 19 14 12 21 21 C 1.52990 * 109.68313 * 9.67709 * 19 14 12 22 22 C 1.52999 * 109.47232 * 177.66805 * 21 19 14 23 23 O 1.42899 * 109.47760 * 174.90087 * 22 21 19 24 24 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46908 * 59.99813 * 9 7 2 26 26 H 1.08999 * 109.46915 * 300.00703 * 9 7 2 27 27 H 1.08988 * 109.47248 * 60.00164 * 10 9 7 28 28 H 1.08993 * 109.46834 * 299.99515 * 10 9 7 29 29 H 0.97004 * 120.00290 * 359.97438 * 11 10 9 30 30 H 1.08999 * 109.68051 * 350.28325 * 15 14 12 31 31 H 1.08996 * 109.68005 * 110.79941 * 15 14 12 32 32 H 1.09003 * 109.50944 * 67.62423 * 16 15 14 33 33 H 1.09000 * 109.50838 * 187.72501 * 16 15 14 34 34 H 1.09005 * 109.50953 * 177.49629 * 18 17 16 35 35 H 1.08992 * 109.51034 * 57.34137 * 18 17 16 36 36 H 1.09007 * 109.47318 * 297.66564 * 21 19 14 37 37 H 1.08999 * 109.47294 * 57.67089 * 21 19 14 38 38 H 1.09010 * 109.47254 * 294.90359 * 22 21 19 39 39 H 1.09001 * 109.47410 * 54.89699 * 22 21 19 40 40 H 0.96693 * 114.00231 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3990 -6.1000 0.0938 14 7 1.5170 -7.2628 -0.1053 15 6 0.0644 -7.2830 -0.3394 16 6 -0.5796 -8.2104 0.6975 17 8 0.0849 -9.4760 0.6742 18 6 1.4679 -9.4176 1.0318 19 6 2.2168 -8.5520 0.0120 20 1 2.2285 -9.0527 -0.9561 21 6 3.6516 -8.3181 0.4885 22 6 4.3566 -9.6645 0.6646 23 8 5.7294 -9.4441 0.9943 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.5429 -4.9307 -0.0011 30 1 -0.3388 -6.2761 -0.2320 31 1 -0.1405 -7.6553 -1.3432 32 1 -0.4859 -7.7682 1.6894 33 1 -1.6341 -8.3476 0.4581 34 1 1.8866 -10.4240 1.0324 35 1 1.5689 -8.9798 2.0248 36 1 4.1871 -7.7215 -0.2501 37 1 3.6364 -7.7887 1.4413 38 1 3.8756 -10.2244 1.4667 39 1 4.2925 -10.2323 -0.2637 40 1 6.2387 -10.2562 1.1212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758658158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:38 Heat of formation + Delta-G solvation = -111.048683 kcal Electronic energy + Delta-G solvation = -21629.929533 eV Core-core repulsion = 18252.528459 eV Total energy + Delta-G solvation = -3377.401074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71341 -38.45534 -37.15634 -35.29038 -34.67619 -33.53282 -32.49506 -29.75023 -29.14959 -27.05843 -25.06101 -24.26745 -22.49293 -21.72671 -20.74080 -19.67424 -18.00758 -17.38753 -16.54987 -16.49855 -16.18973 -15.67908 -15.42847 -15.00316 -14.81998 -14.51465 -14.46505 -13.95023 -13.59702 -13.23825 -12.88972 -12.77809 -12.29740 -11.91239 -11.86565 -11.44057 -11.24952 -11.16155 -11.05202 -11.00143 -10.60943 -10.42855 -10.30573 -10.05394 -9.64162 -9.33107 -8.96692 -8.66944 -8.46744 -8.21969 -6.10102 -4.12585 2.66980 3.28422 3.36098 3.41654 3.47380 3.52890 4.00011 4.26507 4.42675 4.51876 4.74072 4.80603 4.89923 4.95393 5.09020 5.13277 5.25959 5.27307 5.28101 5.39624 5.47674 5.52090 5.65214 6.17039 6.21272 6.35798 6.38908 6.67013 6.76078 6.82746 7.01104 7.08078 7.53316 7.54215 7.61363 7.89060 8.21975 8.33092 8.90545 8.95841 9.52410 11.01639 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.003888 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.223554 B = 7200.147149 C = 8239.256882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.738 5.738 12 C 0.703 3.297 13 O -0.582 6.582 14 N -0.637 5.637 15 C 0.077 3.923 16 C 0.046 3.954 17 O -0.380 6.380 18 C 0.047 3.953 19 C 0.138 3.862 20 H 0.077 0.923 21 C -0.115 4.115 22 C 0.070 3.930 23 O -0.568 6.568 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.390 0.610 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -21.388 0.927 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.394 5.394 12 C 0.405 3.595 13 O -0.460 6.460 14 N -0.377 5.377 15 C -0.046 4.046 16 C -0.031 4.031 17 O -0.298 6.298 18 C -0.031 4.031 19 C 0.034 3.966 20 H 0.095 0.905 21 C -0.152 4.152 22 C -0.009 4.009 23 O -0.372 6.372 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.291 -20.743 0.881 20.764 hybrid contribution -0.001 0.606 0.081 0.611 sum 0.290 -20.138 0.962 20.163 Atomic orbital electron populations 1.69962 1.06099 1.26757 1.50569 1.24993 0.94890 0.99422 0.94985 0.86457 0.80212 0.83305 0.77601 1.19543 1.20937 1.20943 1.21088 0.93326 0.90308 1.51112 0.92140 1.19326 0.94258 0.91153 0.97730 1.21609 0.95666 0.80340 1.00735 1.45800 1.09852 1.05397 1.78348 1.16028 0.85384 0.80185 0.77948 1.90910 1.11598 1.85450 1.58056 1.47334 1.07621 1.04688 1.78094 1.22325 0.80789 1.01487 1.00034 1.23009 0.97071 0.84486 0.98575 1.87944 1.22436 1.29432 1.90008 1.23208 0.81780 1.00786 0.97292 1.21585 0.92434 0.83367 0.99233 0.90479 1.22029 0.92470 0.95278 1.05453 1.22382 0.82467 0.98027 0.98005 1.86559 1.21809 1.35642 1.93228 0.92917 0.96026 0.96035 0.92617 0.92781 0.77409 0.88961 0.90472 0.92385 0.87495 0.87849 0.92380 0.86803 0.90510 0.94250 0.93936 0.77906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.00 5.62 -4.04 -0.02 2.98 16 11 N -0.74 -13.22 5.46 -65.23 -0.36 -13.58 16 12 C 0.70 12.42 8.13 -86.92 -0.71 11.72 16 13 O -0.58 -12.08 12.10 5.29 0.06 -12.02 16 14 N -0.64 -8.71 3.02 -170.43 -0.51 -9.23 16 15 C 0.08 0.81 6.65 -3.53 -0.02 0.79 16 16 C 0.05 0.43 6.98 37.31 0.26 0.69 16 17 O -0.38 -4.06 10.74 -35.23 -0.38 -4.44 16 18 C 0.05 0.47 5.65 37.31 0.21 0.68 16 19 C 0.14 1.65 3.22 -67.42 -0.22 1.43 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 21 C -0.11 -1.57 3.58 -26.74 -0.10 -1.67 16 22 C 0.07 0.71 6.52 37.16 0.24 0.96 16 23 O -0.57 -6.65 13.66 -35.23 -0.48 -7.13 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.26 8.14 -51.94 -0.42 0.84 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.39 6.08 6.01 -40.82 -0.25 5.83 16 30 H 0.09 0.92 5.65 -51.93 -0.29 0.62 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.79 7.02 -51.93 -0.36 0.42 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.11 1.96 6.12 -51.93 -0.32 1.65 16 37 H 0.08 1.24 7.43 -51.93 -0.39 0.85 16 38 H 0.04 0.32 6.91 -51.92 -0.36 -0.04 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.37 2.34 9.12 45.56 0.42 2.75 16 LS Contribution 320.85 15.07 4.84 4.84 Total: -1.00 -33.80 320.85 -7.34 -41.14 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.32 Total: 4.82 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.91 Total: 4.54 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.13 Total: -48.14 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.80 Total: -23.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.80 -7.34 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758658158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.912 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds