Wall clock time and date at job start Mon Mar 30 2020 04:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47156 * 299.99942 * 3 2 1 6 6 H 1.48502 * 109.47195 * 59.99559 * 3 2 1 7 7 C 1.37876 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99943 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47218 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.46728 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99877 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00026 * 5.10148 * 12 11 10 14 14 N 1.34776 * 120.00260 * 185.11042 * 12 11 10 15 15 C 1.47156 * 120.98113 * 5.42177 * 14 12 11 16 16 C 1.53298 * 108.38209 * 230.56054 * 15 14 12 17 17 O 1.42956 * 109.22382 * 307.69764 * 16 15 14 18 18 C 1.42967 * 114.16714 * 62.58396 * 17 16 15 19 19 C 1.47156 * 120.98013 * 185.45037 * 14 12 11 20 20 H 1.09003 * 109.67838 * 249.15700 * 19 14 12 21 21 C 1.52990 * 109.68313 * 9.67709 * 19 14 12 22 22 C 1.52999 * 109.47232 * 177.66805 * 21 19 14 23 23 O 1.42899 * 109.47760 * 174.90087 * 22 21 19 24 24 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46908 * 59.99813 * 9 7 2 26 26 H 1.08999 * 109.46915 * 300.00703 * 9 7 2 27 27 H 1.08988 * 109.47248 * 60.00164 * 10 9 7 28 28 H 1.08993 * 109.46834 * 299.99515 * 10 9 7 29 29 H 0.97004 * 120.00290 * 359.97438 * 11 10 9 30 30 H 1.08999 * 109.68051 * 350.28325 * 15 14 12 31 31 H 1.08996 * 109.68005 * 110.79941 * 15 14 12 32 32 H 1.09003 * 109.50944 * 67.62423 * 16 15 14 33 33 H 1.09000 * 109.50838 * 187.72501 * 16 15 14 34 34 H 1.09005 * 109.50953 * 177.49629 * 18 17 16 35 35 H 1.08992 * 109.51034 * 57.34137 * 18 17 16 36 36 H 1.09007 * 109.47318 * 297.66564 * 21 19 14 37 37 H 1.08999 * 109.47294 * 57.67089 * 21 19 14 38 38 H 1.09010 * 109.47254 * 294.90359 * 22 21 19 39 39 H 1.09001 * 109.47410 * 54.89699 * 22 21 19 40 40 H 0.96693 * 114.00231 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3990 -6.1000 0.0938 14 7 1.5170 -7.2628 -0.1053 15 6 0.0644 -7.2830 -0.3394 16 6 -0.5796 -8.2104 0.6975 17 8 0.0849 -9.4760 0.6742 18 6 1.4679 -9.4176 1.0318 19 6 2.2168 -8.5520 0.0120 20 1 2.2285 -9.0527 -0.9561 21 6 3.6516 -8.3181 0.4885 22 6 4.3566 -9.6645 0.6646 23 8 5.7294 -9.4441 0.9943 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.5429 -4.9307 -0.0011 30 1 -0.3388 -6.2761 -0.2320 31 1 -0.1405 -7.6553 -1.3432 32 1 -0.4859 -7.7682 1.6894 33 1 -1.6341 -8.3476 0.4581 34 1 1.8866 -10.4240 1.0324 35 1 1.5689 -8.9798 2.0248 36 1 4.1871 -7.7215 -0.2501 37 1 3.6364 -7.7887 1.4413 38 1 3.8756 -10.2244 1.4667 39 1 4.2925 -10.2323 -0.2637 40 1 6.2387 -10.2562 1.1212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758658158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:38 Heat of formation + Delta-G solvation = -138.399003 kcal Electronic energy + Delta-G solvation = -21631.115532 eV Core-core repulsion = 18252.528459 eV Total energy + Delta-G solvation = -3378.587073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87417 -39.56827 -38.03338 -36.80625 -35.85169 -35.12205 -33.99254 -31.40425 -30.23917 -28.09360 -26.69727 -25.40454 -23.55096 -23.15732 -22.18831 -20.95290 -19.14453 -18.52822 -18.26718 -17.46860 -17.37515 -16.92928 -16.52128 -16.26062 -15.97233 -15.88362 -15.73133 -15.25307 -14.90111 -14.43012 -14.30020 -14.25822 -13.64548 -13.23990 -12.96991 -12.85380 -12.73725 -12.50309 -12.40960 -12.28515 -12.15782 -11.87534 -11.62331 -11.40554 -11.26824 -10.87890 -10.61466 -10.32006 -10.08358 -9.46102 -8.25117 -6.35256 1.40584 1.41142 1.49059 1.55877 2.07823 2.39699 2.76559 2.86613 3.09830 3.37295 3.62400 3.89232 3.97326 4.05118 4.12191 4.28787 4.32677 4.39013 4.45564 4.49305 4.50060 4.59895 4.66493 4.80049 4.84205 4.85109 5.15509 5.22290 5.28220 5.50366 5.57089 5.62686 5.76418 5.84072 6.04988 6.16056 6.77588 6.92594 6.97221 7.34170 7.53833 8.87022 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.003888 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.223554 B = 7200.147149 C = 8239.256882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.161 3.839 11 N -0.735 5.735 12 C 0.698 3.302 13 O -0.618 6.618 14 N -0.633 5.633 15 C 0.071 3.929 16 C 0.048 3.952 17 O -0.385 6.385 18 C 0.054 3.946 19 C 0.136 3.864 20 H 0.093 0.907 21 C -0.107 4.107 22 C 0.073 3.927 23 O -0.599 6.599 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.402 0.598 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -22.870 0.847 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.037 3.963 11 N -0.392 5.392 12 C 0.400 3.600 13 O -0.499 6.499 14 N -0.372 5.372 15 C -0.051 4.051 16 C -0.029 4.029 17 O -0.303 6.303 18 C -0.024 4.024 19 C 0.032 3.968 20 H 0.110 0.890 21 C -0.145 4.145 22 C -0.005 4.005 23 O -0.408 6.408 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.316 -22.291 0.800 22.308 hybrid contribution 0.166 1.003 0.099 1.022 sum -0.151 -21.288 0.899 21.308 Atomic orbital electron populations 1.70055 1.07480 1.27956 1.51030 1.25844 0.95797 1.03005 0.94357 0.85402 0.78930 0.78792 0.77951 1.19109 1.20104 1.20175 1.21475 0.93554 0.91904 1.51525 0.92443 1.19118 0.94184 0.91618 0.96319 1.21063 0.94638 0.81115 0.99485 1.45502 1.10304 1.04555 1.78854 1.16181 0.85031 0.80985 0.77799 1.90920 1.13315 1.86214 1.59468 1.47415 1.09089 1.03974 1.76731 1.22607 0.78655 1.02338 1.01515 1.23128 0.98303 0.83674 0.97821 1.87949 1.22494 1.29949 1.89903 1.23235 0.81480 1.01742 0.95905 1.21797 0.91559 0.82717 1.00728 0.88967 1.21767 0.93792 0.96649 1.02290 1.22369 0.81844 0.96015 1.00224 1.86500 1.22813 1.38039 1.93433 0.92503 0.97205 0.97384 0.94039 0.93877 0.76002 0.88720 0.88907 0.92818 0.84592 0.84794 0.93094 0.90969 0.93852 0.91429 0.91593 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.20 5.62 86.38 0.49 7.68 16 11 N -0.74 -26.88 5.46 -478.56 -2.61 -29.49 16 12 C 0.70 25.23 8.13 179.05 1.46 26.69 16 13 O -0.62 -26.87 12.10 -4.00 -0.05 -26.92 16 14 N -0.63 -16.93 3.02 -811.38 -2.45 -19.38 16 15 C 0.07 1.37 6.65 86.35 0.57 1.94 16 16 C 0.05 0.76 6.98 72.08 0.50 1.27 16 17 O -0.38 -7.02 10.74 -148.98 -1.60 -8.62 16 18 C 0.05 0.93 5.65 72.08 0.41 1.34 16 19 C 0.14 3.05 3.22 44.96 0.14 3.19 16 20 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.11 -2.95 3.58 30.59 0.11 -2.84 16 22 C 0.07 1.38 6.52 71.98 0.47 1.85 16 23 O -0.60 -13.53 13.66 -148.98 -2.04 -15.56 16 24 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.40 12.59 6.01 -92.71 -0.56 12.03 16 30 H 0.09 1.76 5.65 -2.39 -0.01 1.74 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.13 1.50 7.02 -2.38 -0.02 1.48 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 2.61 6.12 -2.38 -0.01 2.60 16 37 H 0.04 1.45 7.43 -2.39 -0.02 1.44 16 38 H 0.07 0.90 6.91 -2.38 -0.02 0.88 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.40 4.33 9.12 -74.06 -0.68 3.66 16 Total: -1.00 -74.42 320.85 -1.61 -76.04 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.18 Total: 19.03 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.00 Total: 12.88 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.78 Total: -102.76 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -3.68 Total: -51.10 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -74.42 -1.61 -76.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758658158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.360 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds