Wall clock time and date at job start Mon Mar 30 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99413 * 2 1 4 4 C 1.46895 * 111.00118 * 123.95295 * 2 1 3 5 5 C 1.53002 * 109.47124 * 66.05044 * 4 2 1 6 6 C 1.53000 * 109.47250 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47222 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99581 * 270.00091 * 7 6 5 9 9 C 1.50705 * 109.46856 * 269.99558 * 8 7 6 10 10 H 1.07995 * 119.99907 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00124 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99841 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00103 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46859 * 60.00253 * 13 11 9 15 15 H 1.48497 * 109.46980 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46919 * 300.00439 * 13 11 9 17 17 C 1.34776 * 120.00120 * 89.99552 * 7 6 5 18 18 O 1.21275 * 119.99864 * 179.97438 * 17 7 6 19 19 C 1.50697 * 120.00098 * 0.02562 * 17 7 6 20 20 F 1.39905 * 115.54916 * 335.58182 * 19 17 7 21 21 C 1.52995 * 117.49757 * 121.25231 * 19 17 7 22 22 C 1.53000 * 117.50034 * 189.91113 * 19 17 7 23 23 H 1.09001 * 109.47236 * 296.04260 * 1 2 3 24 24 H 1.08999 * 109.47447 * 56.04966 * 1 2 3 25 25 H 1.09000 * 109.46771 * 176.04686 * 1 2 3 26 26 H 1.09006 * 109.46820 * 183.95758 * 3 2 1 27 27 H 1.08995 * 109.47587 * 303.95123 * 3 2 1 28 28 H 1.09000 * 109.47042 * 63.96049 * 3 2 1 29 29 H 1.09004 * 109.47293 * 306.04822 * 4 2 1 30 30 H 1.09001 * 109.46898 * 186.04464 * 4 2 1 31 31 H 1.09004 * 109.47216 * 59.99731 * 5 4 2 32 32 H 1.09005 * 109.46885 * 300.00001 * 5 4 2 33 33 H 1.08997 * 109.47470 * 59.99372 * 6 5 4 34 34 H 1.09003 * 109.46411 * 299.99807 * 6 5 4 35 35 H 1.08997 * 109.47892 * 29.99337 * 8 7 6 36 36 H 1.08998 * 109.47397 * 150.00112 * 8 7 6 37 37 H 0.97005 * 119.99757 * 179.97438 * 12 11 9 38 38 H 1.09007 * 117.50112 * 215.00270 * 21 19 17 39 39 H 1.08997 * 117.50394 * 0.02562 * 21 19 17 40 40 H 1.09000 * 117.49640 * 359.97438 * 22 19 17 41 41 H 1.08999 * 117.49959 * 144.99344 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 6 2.1794 -3.0403 2.1554 7 7 1.8315 -4.4543 1.9949 8 6 0.5745 -4.9665 2.5463 9 6 0.8025 -5.4430 3.9578 10 1 1.7852 -5.3711 4.3999 11 6 -0.2438 -5.9697 4.6850 12 7 -1.4406 -6.0568 4.1467 13 14 0.0389 -6.5611 6.4343 14 1 0.5212 -5.4302 7.2671 15 1 -1.2352 -7.0801 6.9933 16 1 1.0556 -7.6434 6.4326 17 6 2.6677 -5.2839 1.3400 18 8 2.3798 -6.4546 1.2075 19 6 3.9608 -4.7572 0.7732 20 9 3.9828 -3.3867 0.4927 21 6 5.2603 -5.3988 1.2634 22 6 4.7542 -5.6807 -0.1534 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0827 1.3434 -0.0709 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8723 0.9234 29 1 1.5611 -0.3872 2.0628 30 1 3.0798 -0.6610 1.1755 31 1 2.0659 -2.6213 0.0450 32 1 0.5473 -2.3475 0.9322 33 1 1.7447 -2.6615 3.0804 34 1 3.2636 -2.9353 2.1938 35 1 -0.1722 -4.1725 2.5471 36 1 0.2213 -5.7969 1.9351 37 1 -2.1766 -6.4278 4.6583 38 1 6.1324 -4.7532 1.3675 39 1 5.1799 -6.2023 1.9956 40 1 4.3410 -6.6694 -0.3527 41 1 5.2932 -5.2206 -0.9816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843777628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:22 Heat of formation + Delta-G solvation = -43.899342 kcal Electronic energy + Delta-G solvation = -22005.993481 eV Core-core repulsion = 18643.877010 eV Total energy + Delta-G solvation = -3362.116471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.71475 -39.13411 -37.68505 -36.04170 -34.79716 -32.84462 -31.22456 -27.81879 -27.56696 -25.95724 -24.30329 -22.77178 -22.54061 -21.67145 -20.65651 -18.87556 -17.04880 -16.47861 -16.25050 -15.58571 -15.28107 -15.15685 -14.88893 -14.58176 -14.35140 -13.97893 -13.80398 -13.62593 -13.04356 -12.64799 -12.42407 -12.26241 -12.09763 -11.74363 -11.60770 -11.52596 -11.46670 -11.16275 -11.12388 -11.00297 -10.72825 -10.57491 -10.26748 -10.15586 -9.81570 -9.67093 -9.01823 -8.45431 -8.33893 -7.72926 -6.06530 -4.11606 2.89194 3.30592 3.35023 3.37382 3.57705 3.89672 4.00731 4.26430 4.42522 4.74277 4.80780 4.96954 5.10233 5.16157 5.27770 5.28952 5.39772 5.54544 5.56733 5.65164 5.69484 5.71145 5.77370 5.83666 5.88822 5.96188 6.02076 6.10525 6.12696 6.42423 6.66681 7.00050 7.04357 7.09169 7.38888 7.47866 7.88984 8.19582 8.31304 8.79828 8.96632 9.53247 11.01577 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.006361 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.867808 B = 4400.724953 C = 5942.405729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.061 3.939 5 C -0.132 4.132 6 C 0.105 3.895 7 N -0.582 5.582 8 C 0.246 3.754 9 C -0.528 4.528 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.531 3.469 18 O -0.527 6.527 19 C 0.008 3.992 20 F -0.164 7.164 21 C -0.163 4.163 22 C -0.157 4.157 23 H 0.025 0.975 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 10.974 -7.390 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.271 5.271 3 C -0.123 4.123 4 C -0.067 4.067 5 C -0.171 4.171 6 C -0.019 4.019 7 N -0.311 5.311 8 C 0.127 3.873 9 C -0.567 4.567 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.315 3.685 18 O -0.405 6.405 19 C -0.014 4.014 20 F -0.144 7.144 21 C -0.201 4.201 22 C -0.195 4.195 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.535 10.115 -7.830 15.954 hybrid contribution -0.235 0.437 1.750 1.819 sum 9.300 10.552 -6.081 15.324 Atomic orbital electron populations 1.22445 0.87397 1.02831 1.00088 1.61973 1.08102 1.13325 1.43741 1.22362 1.00662 0.89129 1.00163 1.22047 0.99969 0.93871 0.90841 1.22084 1.01650 0.93372 0.99968 1.21681 1.00888 0.81258 0.98102 1.48142 1.22194 1.08050 1.52714 1.19347 0.78725 0.95346 0.93843 1.21373 0.95766 1.41534 0.98001 0.92453 1.24927 0.94960 0.95534 0.98582 1.69925 1.00530 1.45411 1.37419 0.86549 0.77486 0.79180 0.84159 1.20245 1.21142 1.20148 1.19188 0.83467 0.86378 0.79443 1.90702 1.73996 1.16117 1.59637 1.21395 0.94933 0.77225 1.07838 1.92801 1.97224 1.30230 1.94137 1.23616 0.94810 1.03055 0.98611 1.23584 1.00645 1.01287 0.93962 0.95656 0.91781 0.90703 0.91495 0.91665 0.95878 0.94804 0.90772 0.90442 0.91778 0.90480 0.90176 0.94755 0.93758 0.92618 0.87172 0.86715 0.86145 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.07 0.56 0.81 16 2 N -0.55 -6.94 5.02 -251.26 -1.26 -8.20 16 3 C 0.03 0.26 9.57 60.07 0.57 0.83 16 4 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 5 C -0.13 -2.06 4.88 -26.73 -0.13 -2.19 16 6 C 0.11 1.84 4.93 -4.04 -0.02 1.82 16 7 N -0.58 -12.68 2.46 -175.06 -0.43 -13.11 16 8 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 9 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.53 11.36 7.43 -10.99 -0.08 11.28 16 18 O -0.53 -13.14 15.89 5.56 0.09 -13.05 16 19 C 0.01 0.13 3.19 -91.78 -0.29 -0.16 16 20 F -0.16 -2.54 12.17 2.25 0.03 -2.51 16 21 C -0.16 -2.16 10.22 -26.70 -0.27 -2.43 16 22 C -0.16 -2.09 10.03 -26.70 -0.27 -2.36 16 23 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 26 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 27 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 31 H 0.08 1.29 6.56 -51.93 -0.34 0.95 16 32 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 33 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.08 1.28 5.68 -51.93 -0.29 0.99 16 35 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.12 1.70 7.71 -51.93 -0.40 1.30 16 41 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -31.77 338.13 -7.86 -39.63 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.70 Total: -0.10 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.40 Total: 1.24 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.95 Total: -47.02 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.03 Total: -2.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.77 -7.86 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843777628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.271 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds