Wall clock time and date at job start Mon Mar 30 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99413 * 2 1 4 4 C 1.46895 * 111.00118 * 123.95295 * 2 1 3 5 5 C 1.53002 * 109.47124 * 66.05044 * 4 2 1 6 6 C 1.53000 * 109.47250 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47222 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99581 * 270.00091 * 7 6 5 9 9 C 1.50705 * 109.46856 * 269.99558 * 8 7 6 10 10 H 1.07995 * 119.99907 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00124 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99841 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00103 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46859 * 60.00253 * 13 11 9 15 15 H 1.48497 * 109.46980 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46919 * 300.00439 * 13 11 9 17 17 C 1.34776 * 120.00120 * 89.99552 * 7 6 5 18 18 O 1.21275 * 119.99864 * 179.97438 * 17 7 6 19 19 C 1.50697 * 120.00098 * 0.02562 * 17 7 6 20 20 F 1.39905 * 115.54916 * 335.58182 * 19 17 7 21 21 C 1.52995 * 117.49757 * 121.25231 * 19 17 7 22 22 C 1.53000 * 117.50034 * 189.91113 * 19 17 7 23 23 H 1.09001 * 109.47236 * 296.04260 * 1 2 3 24 24 H 1.08999 * 109.47447 * 56.04966 * 1 2 3 25 25 H 1.09000 * 109.46771 * 176.04686 * 1 2 3 26 26 H 1.09006 * 109.46820 * 183.95758 * 3 2 1 27 27 H 1.08995 * 109.47587 * 303.95123 * 3 2 1 28 28 H 1.09000 * 109.47042 * 63.96049 * 3 2 1 29 29 H 1.09004 * 109.47293 * 306.04822 * 4 2 1 30 30 H 1.09001 * 109.46898 * 186.04464 * 4 2 1 31 31 H 1.09004 * 109.47216 * 59.99731 * 5 4 2 32 32 H 1.09005 * 109.46885 * 300.00001 * 5 4 2 33 33 H 1.08997 * 109.47470 * 59.99372 * 6 5 4 34 34 H 1.09003 * 109.46411 * 299.99807 * 6 5 4 35 35 H 1.08997 * 109.47892 * 29.99337 * 8 7 6 36 36 H 1.08998 * 109.47397 * 150.00112 * 8 7 6 37 37 H 0.97005 * 119.99757 * 179.97438 * 12 11 9 38 38 H 1.09007 * 117.50112 * 215.00270 * 21 19 17 39 39 H 1.08997 * 117.50394 * 0.02562 * 21 19 17 40 40 H 1.09000 * 117.49640 * 359.97438 * 22 19 17 41 41 H 1.08999 * 117.49959 * 144.99344 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 6 2.1794 -3.0403 2.1554 7 7 1.8315 -4.4543 1.9949 8 6 0.5745 -4.9665 2.5463 9 6 0.8025 -5.4430 3.9578 10 1 1.7852 -5.3711 4.3999 11 6 -0.2438 -5.9697 4.6850 12 7 -1.4406 -6.0568 4.1467 13 14 0.0389 -6.5611 6.4343 14 1 0.5212 -5.4302 7.2671 15 1 -1.2352 -7.0801 6.9933 16 1 1.0556 -7.6434 6.4326 17 6 2.6677 -5.2839 1.3400 18 8 2.3798 -6.4546 1.2075 19 6 3.9608 -4.7572 0.7732 20 9 3.9828 -3.3867 0.4927 21 6 5.2603 -5.3988 1.2634 22 6 4.7542 -5.6807 -0.1534 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0827 1.3434 -0.0709 27 1 1.5897 1.9164 -0.8524 28 1 1.7043 1.8723 0.9234 29 1 1.5611 -0.3872 2.0628 30 1 3.0798 -0.6610 1.1755 31 1 2.0659 -2.6213 0.0450 32 1 0.5473 -2.3475 0.9322 33 1 1.7447 -2.6615 3.0804 34 1 3.2636 -2.9353 2.1938 35 1 -0.1722 -4.1725 2.5471 36 1 0.2213 -5.7969 1.9351 37 1 -2.1766 -6.4278 4.6583 38 1 6.1324 -4.7532 1.3675 39 1 5.1799 -6.2023 1.9956 40 1 4.3410 -6.6694 -0.3527 41 1 5.2932 -5.2206 -0.9816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843777628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:22 Heat of formation + Delta-G solvation = -64.629586 kcal Electronic energy + Delta-G solvation = -22006.892411 eV Core-core repulsion = 18643.877010 eV Total energy + Delta-G solvation = -3363.015402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.94940 -40.80002 -38.77239 -37.41773 -36.30115 -34.92288 -32.69617 -29.77978 -28.47522 -27.22275 -26.14142 -24.12035 -23.61511 -23.24357 -21.78216 -20.38077 -18.70353 -18.48757 -17.79053 -16.78052 -16.71192 -16.42275 -16.26418 -15.96021 -15.61619 -15.31913 -15.25491 -15.13191 -14.34068 -14.25985 -13.97477 -13.53693 -13.33716 -13.21459 -13.08534 -12.73808 -12.62456 -12.60635 -12.54327 -12.37674 -12.35992 -12.18771 -11.98766 -11.75298 -11.52358 -11.04638 -10.67859 -10.66247 -9.56529 -9.29913 -8.24983 -6.40369 1.34625 1.38909 1.40684 1.48390 2.01258 2.37762 2.64375 2.90968 3.04954 3.07212 3.36546 3.70488 3.80385 3.92452 4.17027 4.23685 4.37339 4.44589 4.50944 4.59206 4.62327 4.67881 4.73338 4.76238 4.81311 4.83668 4.98525 5.01740 5.03847 5.08042 5.10784 5.17343 5.34029 5.51307 5.76046 6.00726 6.06132 6.14375 6.56941 6.68125 7.13444 7.32485 8.82520 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.006361 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.867808 B = 4400.724953 C = 5942.405729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.562 5.562 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.119 4.119 6 C 0.106 3.894 7 N -0.590 5.590 8 C 0.263 3.737 9 C -0.545 4.545 10 H 0.055 0.945 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.970 3.030 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.275 1.275 17 C 0.520 3.480 18 O -0.576 6.576 19 C -0.015 4.015 20 F -0.157 7.157 21 C -0.139 4.139 22 C -0.138 4.138 23 H 0.026 0.974 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.022 0.978 36 H 0.000 1.000 37 H 0.268 0.732 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 12.437 -7.053 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.286 5.286 3 C -0.122 4.122 4 C -0.059 4.059 5 C -0.158 4.158 6 C -0.017 4.017 7 N -0.319 5.319 8 C 0.142 3.858 9 C -0.584 4.584 10 H 0.073 0.927 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.794 3.206 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.200 1.200 17 C 0.307 3.693 18 O -0.457 6.457 19 C -0.037 4.037 20 F -0.137 7.137 21 C -0.176 4.176 22 C -0.176 4.176 23 H 0.044 0.956 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.040 0.960 36 H 0.018 0.982 37 H 0.077 0.923 38 H 0.167 0.833 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.972 11.629 -7.505 18.300 hybrid contribution -1.013 -0.009 1.576 1.873 sum 10.959 11.620 -5.929 17.038 Atomic orbital electron populations 1.22434 0.87371 1.01973 1.00925 1.61961 1.08321 1.14985 1.43330 1.22429 1.01247 0.87593 1.00981 1.21934 1.00831 0.91910 0.91271 1.21915 1.00097 0.95168 0.98577 1.21878 1.02207 0.78956 0.98613 1.48164 1.21010 1.09997 1.52697 1.18795 0.80773 0.93461 0.92796 1.21625 0.95808 1.42086 0.98844 0.92682 1.25873 0.94544 0.95359 1.03208 1.70052 1.01442 1.45952 1.39259 0.85437 0.77611 0.78925 0.78675 1.18530 1.20284 1.20026 1.20097 0.84871 0.85804 0.78572 1.90660 1.75488 1.18203 1.61352 1.21048 0.93357 0.78029 1.11245 1.92805 1.97084 1.29600 1.94229 1.23799 0.93492 1.02219 0.98124 1.23746 0.98833 0.99813 0.95188 0.95554 0.90061 0.92592 0.90527 0.90409 0.95405 0.94716 0.89291 0.91248 0.93832 0.91189 0.87905 0.96019 0.98165 0.92304 0.83332 0.87750 0.87501 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.32 127.69 1.19 1.68 16 2 N -0.56 -13.39 5.02 -948.83 -4.76 -18.15 16 3 C 0.03 0.45 9.57 127.69 1.22 1.67 16 4 C 0.07 1.73 4.96 86.30 0.43 2.16 16 5 C -0.12 -3.74 4.88 30.60 0.15 -3.59 16 6 C 0.11 3.75 4.93 86.38 0.43 4.17 16 7 N -0.59 -26.70 2.46 -826.17 -2.03 -28.73 16 8 C 0.26 14.60 5.16 85.64 0.44 15.05 16 9 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 10 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 11 C 0.01 0.54 5.46 84.65 0.46 1.01 16 12 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 13 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.52 22.81 7.43 87.66 0.65 23.47 16 18 O -0.58 -30.11 15.89 -3.02 -0.05 -30.16 16 19 C -0.02 -0.47 3.19 -11.54 -0.04 -0.51 16 20 F -0.16 -4.51 12.17 44.97 0.55 -3.96 16 21 C -0.14 -3.25 10.22 30.62 0.31 -2.94 16 22 C -0.14 -3.34 10.03 30.62 0.31 -3.03 16 23 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 25 H 0.06 1.49 6.47 -2.39 -0.02 1.48 16 26 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 27 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 28 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.09 1.98 8.06 -2.39 -0.02 1.96 16 31 H 0.07 2.30 6.56 -2.39 -0.02 2.29 16 32 H 0.04 1.53 6.55 -2.38 -0.02 1.52 16 33 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 34 H 0.10 3.16 5.68 -2.39 -0.01 3.15 16 35 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 36 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 37 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 38 H 0.15 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.11 2.92 7.71 -2.39 -0.02 2.90 16 41 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -71.79 338.13 2.81 -68.98 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.00 Total: 13.74 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.79 Total: 7.58 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -6.51 Total: -103.06 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.55 Total: -3.96 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.79 2.81 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843777628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.346 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds