Wall clock time and date at job start Mon Mar 30 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00255 * 2 1 4 4 H 1.48494 * 109.46956 * 269.99667 * 3 2 1 5 5 H 1.48497 * 109.47072 * 29.99817 * 3 2 1 6 6 H 1.48502 * 109.47150 * 149.99746 * 3 2 1 7 7 C 1.37880 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00100 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00289 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00414 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.47372 * 179.97438 * 13 11 10 15 15 C 1.46840 * 111.00349 * 293.95601 * 14 13 11 16 16 C 1.53041 * 109.52622 * 174.15822 * 15 14 13 17 17 C 1.53112 * 109.27719 * 59.18161 * 16 15 14 18 18 C 1.53124 * 109.16170 * 302.34560 * 17 16 15 19 19 H 1.09005 * 109.50437 * 297.67744 * 18 17 16 20 20 C 1.52996 * 109.50696 * 177.59782 * 18 17 16 21 21 C 1.52997 * 109.47131 * 64.99818 * 20 18 17 22 22 F 1.39905 * 109.47157 * 180.02562 * 21 20 18 23 23 C 1.46853 * 111.00006 * 169.74326 * 14 13 11 24 24 H 0.97001 * 119.99826 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47346 * 59.99987 * 9 7 2 26 26 H 1.09002 * 109.46802 * 299.99950 * 9 7 2 27 27 H 0.97003 * 119.99935 * 0.02562 * 10 9 7 28 28 H 1.09006 * 109.46869 * 60.00568 * 13 11 10 29 29 H 1.08997 * 109.47346 * 300.00369 * 13 11 10 30 30 H 1.09007 * 109.46298 * 54.14302 * 15 14 13 31 31 H 1.09001 * 109.45492 * 294.17153 * 15 14 13 32 32 H 1.08997 * 109.50206 * 299.23786 * 16 15 14 33 33 H 1.08995 * 109.53370 * 179.14577 * 16 15 14 34 34 H 1.09001 * 109.52513 * 182.44774 * 17 16 15 35 35 H 1.08991 * 109.52650 * 62.25117 * 17 16 15 36 36 H 1.09001 * 109.46993 * 304.99686 * 20 18 17 37 37 H 1.09004 * 109.47298 * 185.00101 * 20 18 17 38 38 H 1.09001 * 109.46832 * 60.00325 * 21 20 18 39 39 H 1.09004 * 109.47261 * 300.00306 * 21 20 18 40 40 H 1.09000 * 109.46051 * 65.82851 * 23 14 13 41 41 H 1.09001 * 109.46374 * 305.86077 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5612 -5.1050 0.0017 13 6 2.7329 -6.0288 0.0032 14 7 1.9983 -7.3010 0.0046 15 6 1.2536 -7.4774 1.2577 16 6 0.3888 -8.7367 1.1659 17 6 1.2876 -9.9495 0.9096 18 6 2.0879 -9.7194 -0.3754 19 1 1.4037 -9.6298 -1.2192 20 6 3.0328 -10.9002 -0.6071 21 6 2.2133 -12.1666 -0.8625 22 9 3.0773 -13.2465 -1.0739 23 6 2.9034 -8.4316 -0.2389 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 3.1566 -3.4355 0.0028 28 1 3.3595 -5.9706 0.8933 29 1 3.3596 -5.9717 -0.8867 30 1 0.6152 -6.6100 1.4260 31 1 1.9551 -7.5781 2.0859 32 1 -0.3222 -8.6310 0.3465 33 1 -0.1525 -8.8761 2.1016 34 1 0.6721 -10.8425 0.8002 35 1 1.9728 -10.0786 1.7473 36 1 3.6581 -11.0435 0.2742 37 1 3.6647 -10.6957 -1.4715 38 1 1.5881 -12.0232 -1.7438 39 1 1.5814 -12.3711 0.0018 40 1 3.5971 -8.5278 0.5964 41 1 3.4635 -8.2572 -1.1576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852532442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:39 Heat of formation + Delta-G solvation = -107.445493 kcal Electronic energy + Delta-G solvation = -20879.144261 eV Core-core repulsion = 17514.272222 eV Total energy + Delta-G solvation = -3364.872039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.85551 -39.71218 -38.25135 -34.91838 -34.05177 -32.47499 -32.18683 -29.21901 -28.13324 -26.38066 -24.27211 -23.13497 -22.36857 -21.29783 -19.84986 -19.59815 -17.11687 -16.45298 -16.35494 -15.95400 -15.46993 -15.35568 -15.19099 -14.95535 -14.44149 -14.34395 -13.96903 -13.78766 -13.53722 -12.87297 -12.66068 -12.47853 -12.22576 -12.10567 -11.92919 -11.40653 -11.36661 -11.20529 -11.00034 -10.97677 -10.89663 -10.75762 -10.43619 -10.31448 -10.29029 -9.39961 -8.97589 -8.73312 -8.19731 -7.84783 -6.17220 -4.24105 3.23513 3.29548 3.31811 3.39486 3.60426 4.21709 4.31406 4.37868 4.45509 4.52999 4.72155 4.75798 4.85740 5.08140 5.18818 5.23350 5.27823 5.34970 5.39117 5.43258 5.48613 5.48906 5.58553 5.66582 5.72535 5.78761 5.86161 5.95132 6.06656 6.26891 6.35980 7.01984 7.16763 7.33005 7.45921 7.52283 7.67589 7.97040 8.64249 8.79086 9.13466 9.42788 10.92991 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.052426 B = 0.002818 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.957454 B = 9935.462531 C =10243.150755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.538 6.538 13 C 0.036 3.964 14 N -0.519 5.519 15 C 0.050 3.950 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.082 4.082 19 H 0.085 0.915 20 C -0.146 4.146 21 C 0.059 3.941 22 F -0.223 7.223 23 C 0.062 3.938 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.389 0.611 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 -20.806 0.876 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.095 4.095 14 N -0.243 5.243 15 C -0.078 4.078 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.101 4.101 19 H 0.103 0.897 20 C -0.185 4.185 21 C 0.005 3.995 22 F -0.204 7.204 23 C -0.066 4.066 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.221 0.779 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.309 -20.812 0.498 21.485 hybrid contribution 1.586 1.043 0.625 1.999 sum 6.895 -19.769 1.123 20.967 Atomic orbital electron populations 1.69976 1.06106 1.27291 1.48916 1.24958 0.94916 0.99453 0.94723 0.86417 0.79603 0.82668 0.78231 1.20446 1.21006 1.19778 1.21232 0.93247 0.90499 1.53174 0.91939 1.19075 0.88276 0.81903 0.97670 1.46460 1.11056 1.06123 1.72826 1.20294 0.89581 0.84064 0.77829 1.90627 1.16650 1.84514 1.49831 1.21991 0.95440 0.89627 1.02473 1.61507 1.26418 1.00189 1.36186 1.22284 0.96844 1.00111 0.88536 1.21534 0.98028 0.93425 1.02159 1.21743 0.98510 0.98393 0.97050 1.21103 0.96945 0.92806 0.99264 0.89681 1.22168 0.98918 0.94047 1.03337 1.22085 0.91297 0.83282 1.02878 1.92759 1.73018 1.57957 1.96670 1.22097 0.93638 0.90202 1.00634 0.92448 0.95543 0.95655 0.77852 0.92572 0.88393 0.88266 0.95828 0.90762 0.91623 0.91865 0.92230 0.90856 0.90583 0.90664 0.90607 0.94988 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 10 N -0.72 -14.85 5.55 -61.48 -0.34 -15.19 16 11 C 0.50 9.77 7.50 -10.99 -0.08 9.69 16 12 O -0.54 -12.69 14.35 5.55 0.08 -12.61 16 13 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 14 N -0.52 -7.16 4.39 -236.11 -1.04 -8.20 16 15 C 0.05 0.69 5.11 -3.84 -0.02 0.67 16 16 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 17 C -0.12 -1.05 4.98 -26.61 -0.13 -1.18 16 18 C -0.08 -0.72 2.35 -90.54 -0.21 -0.94 16 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.07 5.14 -26.73 -0.14 -1.21 16 21 C 0.06 0.43 7.31 37.16 0.27 0.70 16 22 F -0.22 -2.21 17.36 2.25 0.04 -2.17 16 23 C 0.06 0.65 4.74 -3.83 -0.02 0.63 16 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.10 1.19 7.98 -51.93 -0.41 0.77 16 30 H 0.10 1.72 5.81 -51.92 -0.30 1.42 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.46 6.62 -51.93 -0.34 0.12 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -31.88 331.66 -8.28 -40.16 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.77 Total: 1.94 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.97 Total: 0.65 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.64 Total: -48.73 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.88 -8.28 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852532442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.281 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds