Wall clock time and date at job start Mon Mar 30 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00255 * 2 1 4 4 H 1.48494 * 109.46956 * 269.99667 * 3 2 1 5 5 H 1.48497 * 109.47072 * 29.99817 * 3 2 1 6 6 H 1.48502 * 109.47150 * 149.99746 * 3 2 1 7 7 C 1.37880 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00100 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00289 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00414 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.47372 * 179.97438 * 13 11 10 15 15 C 1.46840 * 111.00349 * 293.95601 * 14 13 11 16 16 C 1.53041 * 109.52622 * 174.15822 * 15 14 13 17 17 C 1.53112 * 109.27719 * 59.18161 * 16 15 14 18 18 C 1.53124 * 109.16170 * 302.34560 * 17 16 15 19 19 H 1.09005 * 109.50437 * 297.67744 * 18 17 16 20 20 C 1.52996 * 109.50696 * 177.59782 * 18 17 16 21 21 C 1.52997 * 109.47131 * 64.99818 * 20 18 17 22 22 F 1.39905 * 109.47157 * 180.02562 * 21 20 18 23 23 C 1.46853 * 111.00006 * 169.74326 * 14 13 11 24 24 H 0.97001 * 119.99826 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47346 * 59.99987 * 9 7 2 26 26 H 1.09002 * 109.46802 * 299.99950 * 9 7 2 27 27 H 0.97003 * 119.99935 * 0.02562 * 10 9 7 28 28 H 1.09006 * 109.46869 * 60.00568 * 13 11 10 29 29 H 1.08997 * 109.47346 * 300.00369 * 13 11 10 30 30 H 1.09007 * 109.46298 * 54.14302 * 15 14 13 31 31 H 1.09001 * 109.45492 * 294.17153 * 15 14 13 32 32 H 1.08997 * 109.50206 * 299.23786 * 16 15 14 33 33 H 1.08995 * 109.53370 * 179.14577 * 16 15 14 34 34 H 1.09001 * 109.52513 * 182.44774 * 17 16 15 35 35 H 1.08991 * 109.52650 * 62.25117 * 17 16 15 36 36 H 1.09001 * 109.46993 * 304.99686 * 20 18 17 37 37 H 1.09004 * 109.47298 * 185.00101 * 20 18 17 38 38 H 1.09001 * 109.46832 * 60.00325 * 21 20 18 39 39 H 1.09004 * 109.47261 * 300.00306 * 21 20 18 40 40 H 1.09000 * 109.46051 * 65.82851 * 23 14 13 41 41 H 1.09001 * 109.46374 * 305.86077 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5612 -5.1050 0.0017 13 6 2.7329 -6.0288 0.0032 14 7 1.9983 -7.3010 0.0046 15 6 1.2536 -7.4774 1.2577 16 6 0.3888 -8.7367 1.1659 17 6 1.2876 -9.9495 0.9096 18 6 2.0879 -9.7194 -0.3754 19 1 1.4037 -9.6298 -1.2192 20 6 3.0328 -10.9002 -0.6071 21 6 2.2133 -12.1666 -0.8625 22 9 3.0773 -13.2465 -1.0739 23 6 2.9034 -8.4316 -0.2389 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 3.1566 -3.4355 0.0028 28 1 3.3595 -5.9706 0.8933 29 1 3.3596 -5.9717 -0.8867 30 1 0.6152 -6.6100 1.4260 31 1 1.9551 -7.5781 2.0859 32 1 -0.3222 -8.6310 0.3465 33 1 -0.1525 -8.8761 2.1016 34 1 0.6721 -10.8425 0.8002 35 1 1.9728 -10.0786 1.7473 36 1 3.6581 -11.0435 0.2742 37 1 3.6647 -10.6957 -1.4715 38 1 1.5881 -12.0232 -1.7438 39 1 1.5814 -12.3711 0.0018 40 1 3.5971 -8.5278 0.5964 41 1 3.4635 -8.2572 -1.1576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852532442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:38 Heat of formation + Delta-G solvation = -129.987119 kcal Electronic energy + Delta-G solvation = -20880.121739 eV Core-core repulsion = 17514.272222 eV Total energy + Delta-G solvation = -3365.849517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.51117 -40.94581 -39.55013 -36.22745 -35.59240 -34.34620 -33.21093 -30.30215 -29.50720 -27.87449 -25.26213 -24.42689 -23.70469 -22.24208 -21.24297 -20.65101 -18.89856 -17.54083 -17.35437 -17.03402 -16.86183 -16.57005 -16.25763 -16.08506 -15.93575 -15.41321 -15.08129 -14.95254 -14.61655 -14.15263 -14.09936 -13.82984 -13.68433 -13.22420 -12.96812 -12.86839 -12.80669 -12.61641 -12.22884 -12.13769 -11.97746 -11.63730 -11.52903 -11.48411 -11.37413 -11.05833 -10.79923 -10.53896 -9.79001 -9.22386 -8.29361 -6.45992 1.42843 1.45331 1.56447 1.81920 2.27535 2.46505 3.05003 3.05558 3.63120 3.75205 3.84833 3.98738 4.06868 4.12237 4.20086 4.30588 4.33855 4.39019 4.50210 4.56496 4.63677 4.68599 4.79028 4.83639 4.98940 5.02937 5.10443 5.13016 5.18371 5.24921 5.26085 5.37433 5.49953 5.52680 5.71698 5.85483 6.01844 6.21209 6.65654 6.97046 7.23851 7.55473 8.82897 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.052426 B = 0.002818 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.957454 B = 9935.462531 C =10243.150755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.584 6.584 13 C 0.050 3.950 14 N -0.540 5.540 15 C 0.051 3.949 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.077 4.077 19 H 0.075 0.925 20 C -0.137 4.137 21 C 0.055 3.945 22 F -0.238 7.238 23 C 0.062 3.938 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.408 0.592 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 -21.713 0.944 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.464 6.464 13 C -0.081 4.081 14 N -0.265 5.265 15 C -0.077 4.077 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.096 4.096 19 H 0.093 0.907 20 C -0.175 4.175 21 C 0.000 4.000 22 F -0.220 7.220 23 C -0.065 4.065 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.243 0.757 28 H 0.100 0.900 29 H 0.145 0.855 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.126 -21.761 0.564 23.236 hybrid contribution 0.653 1.270 0.605 1.551 sum 8.780 -20.491 1.169 22.323 Atomic orbital electron populations 1.70143 1.08310 1.28546 1.50053 1.26086 0.95778 1.03966 0.93892 0.85152 0.78490 0.76937 0.78610 1.19587 1.21004 1.17862 1.21631 0.94317 0.90600 1.52764 0.89781 1.18482 0.88674 0.84378 0.93855 1.46197 1.11121 1.05544 1.73317 1.21391 0.90064 0.84758 0.75800 1.90614 1.19256 1.85182 1.51372 1.21920 0.93811 0.87389 1.04999 1.61462 1.27757 1.01066 1.36248 1.22172 0.96851 0.99414 0.89249 1.21507 0.97892 0.93669 1.01867 1.21719 0.98395 0.97573 0.97390 1.21039 0.96907 0.92788 0.98888 0.90659 1.22053 0.98505 0.93214 1.03708 1.22241 0.91181 0.82607 1.03977 1.92729 1.73641 1.58806 1.96806 1.22212 0.93429 0.89253 1.01649 0.92272 0.99713 0.99699 0.75681 0.89963 0.85486 0.92730 0.94611 0.92738 0.90834 0.90016 0.91226 0.90349 0.90298 0.89777 0.89291 0.93665 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 2 C 0.00 0.12 5.46 84.66 0.46 0.59 16 3 Si 0.99 42.29 29.54 68.60 2.03 44.32 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.87 5.43 85.63 0.46 15.34 16 10 N -0.71 -29.92 5.55 -466.80 -2.59 -32.51 16 11 C 0.49 19.66 7.50 87.66 0.66 20.32 16 12 O -0.58 -29.02 14.35 -3.05 -0.04 -29.06 16 13 C 0.05 1.32 5.45 85.55 0.47 1.78 16 14 N -0.54 -14.24 4.39 -900.91 -3.96 -18.20 16 15 C 0.05 1.40 5.11 86.33 0.44 1.84 16 16 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 17 C -0.11 -1.72 4.98 30.67 0.15 -1.56 16 18 C -0.08 -1.17 2.35 -10.74 -0.03 -1.20 16 19 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 20 C -0.14 -1.60 5.14 30.59 0.16 -1.44 16 21 C 0.05 0.64 7.31 71.98 0.53 1.17 16 22 F -0.24 -4.26 17.36 44.97 0.78 -3.48 16 23 C 0.06 1.10 4.74 86.33 0.41 1.51 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 28 H 0.08 1.80 8.12 -2.38 -0.02 1.78 16 29 H 0.13 2.67 7.98 -2.39 -0.02 2.65 16 30 H 0.05 1.99 5.81 -2.38 -0.01 1.98 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 0.96 6.70 -2.39 -0.02 0.94 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.82 6.62 -2.38 -0.02 0.80 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.09 1.36 8.01 -2.39 -0.02 1.34 16 Total: -1.00 -72.95 331.66 0.88 -72.07 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.24 Total: 17.10 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 4.14 Total: 6.06 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -6.26 Total: -107.00 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.04 Total: -29.06 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.95 0.88 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852532442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.916 kcal (2) G-P(sol) polarization free energy of solvation -72.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds